BAC Information

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BAC

Clone NameB6Ng01-308D14
ChromosomeX (Build37)
Map Location 56,248,778 - 56,393,830
singlet/doubletdoublet
Overlap geneFgf13
Upstream geneZic3, LOC631581, LOC631621, 4930550L24Rik
Downstream geneF9, EG434782, Mcf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308D14.bB6Ng01-308D14.g
ACCGA100781GA100782
length1,1581,147
definitionB6Ng01-308D14.b B6Ng01-308D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,248,778 - 56,249,944)(56,392,680 - 56,393,830)
sequence
gaattcatgaagttcttaggcaaatggatggatctgggggatatcatcct
gagtgaggtaatccaatcacagaagagtacacatggtatgcactcactga
taagtggatattagcccagaagctcagaatacctaagatacaattcacag
actacatgaagctcaagaagaaggaagtccaaaatgtgcatactttggta
cttcttagaagggggaacaaaataactatgggaggagatacaaagtgtgg
agcagagactgaaggaaaggccatcaataactattttctacataaattgc
caaagataaagtcgtcctaaacagaggctcagtgaattttcttaaaatcc
acattcaacattcatctaactccttatcatccatgttgctctggtcttct
attgcaggtcttaatcctgctttgactctggtggattctgccgattacct
taattcctatctgcaacgcttagttaaatttgtatatttatctggtttca
attgtgctgttgccctctggatagtgttattcagcaccatgaagaccaaa
gaccagatccatgctttactggaattacaggtcaggtacaacacctttag
catgtagaagaacagaggtaaaataggtaaattaagatctcattaatatt
tcatagcctcaaaaccaatttccattgtcaaaattttttcaaaactcaga
aatcaatacaaaaagattgtaatagttatattaatgacactttaaacaga
ggcaagggtttcaaagacaagtctaaaaatggtgatgataacagtggggg
aagttacatcgcttctatgtataatttttgacaagttattagggatgttg
taagaactaaatataaaagaaataaaagcacctgtcaatgaaggaaaata
attttcatagacagcatgacaataaatagtcatattttaaaaagaatgaa
tctttgacaatttgcagagagactaatttcccaaagcatttccaattcct
gtagctcttggaatgtctcagaggagatttttgttcatgctaactgacgg
gtgcatcattcacttacaatcttgctatcagaatatcactcttatttctg
catgcaagatagcctgctttatatttcatgtcttcttccgaattccagac
ttatacag

gaattcccagtttaaatactggcactgccacttgggtacttgccaagaaa
ccattgatacaacacttagtctcgctagacttcactttcttcaccagtaa
aattgaaatcatgataataccgactctataggttgtttcttcaaagaaca
ctgggccagaaatgaatccagtgttgtgaatattttgccatgtactataa
atttctaatttcataaaacatcaaagtttcaatgggggaaaaactcttct
ttatgttcactagtgacctactgttcctttgcaatcttccaatattgttg
aataggatcctgaaacaaattcactgtagagaatctgatggctattattg
actttgggcgtcctgacactgctgaagcaaccttgggttctgaatatgtt
gtatctacaaagtgctttctacaggttggacaagactaaattaaaaaaaa
aatgagtgtgactgcctttactcatatgctgtaagttcatccaataggat
ctcttaagggcaaaggtgctcactactccaagccttataaagctatctct
gtaacagaattgctagtctgttcttctccttagaccacttaattcttagc
tgcaggccaaaggtaactgaatagtgtggtgaatatcaagcttcttgggg
aaaccaactcatgcactcacctcaatggaaaatattcttctataccataa
agcttcaattgaactatttgacaatccttgctgaaaacggtgctgacttc
ctataaaatgtaaatctacacattctgacacttaagttgattcccttatg
atctttcttgatggtcaaggaggaacctccaccccagcaatctgccattt
ctattcagattctcttgattaaatggcagagtaggtaactagaggccttg
aattcagctttgcagctgccatggctaattaaatgggttaagtgctggat
ttgtagctatgattataccatcagggttttatgttcttagtgttcaataa
attatgactgaacaatgaaagttttattcggtataggattttttcttctt
aaggatcagaatatcagtattttttcttcattgattttaaatataattca
gaggtggctgagttaaattaatggcttaggtattcagagattgatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_56248778_56249944
seq2: B6Ng01-308D14.b_43_1200

seq1  GAATTCATGAAGTTCTTAGGCAAATGGATGGATCTGGGGGATATCATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAGTTCTTAGGCAAATGGATGGATCTGGGGGATATCATCCT  50

seq1  GAGTGAGGTAATCCAATCACAGAAGAGTACACATGGTATGCACTCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGTAATCCAATCACAGAAGAGTACACATGGTATGCACTCACTGA  100

seq1  TAAGTGGATATTAGCCCAGAAGCTCAGAATACCTAAGATACAATTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATATTAGCCCAGAAGCTCAGAATACCTAAGATACAATTCACAG  150

seq1  ACTACATGAAGCTCAAGAAGAAGGAAGTCCAAAATGTGCATACTTTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATGAAGCTCAAGAAGAAGGAAGTCCAAAATGTGCATACTTTGGTA  200

seq1  CTTCTTAGAAGGGGGAACAAAATAACTATGGGAGGAGATACAAAGTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGAAGGGGGAACAAAATAACTATGGGAGGAGATACAAAGTGTGG  250

seq1  AGCAGAGACTGAAGGAAAGGCCATCAATAACTATTTTCTACATAAATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGACTGAAGGAAAGGCCATCAATAACTATTTTCTACATAAATTGC  300

seq1  CAAAGATAAAGTCGTCCTAAACAGAGGCTCAGTGAATTTTCTTAAAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATAAAGTCGTCCTAAACAGAGGCTCAGTGAATTTTCTTAAAATCC  350

seq1  ACATTCAACATTCATCTAACTCCTTATCATCCATGTTGCTCTGGTCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAACATTCATCTAACTCCTTATCATCCATGTTGCTCTGGTCTTCT  400

seq1  ATTGCAGGTCTTAATCCTGCTTTGACTCTGGTGGATTCTGCCGATTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGTCTTAATCCTGCTTTGACTCTGGTGGATTCTGCCGATTACCT  450

seq1  TAATTCCTATCTGCAACGCTTAGTTAAATTTGTATATTTATCTGGTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTATCTGCAACGCTTAGTTAAATTTGTATATTTATCTGGTTTCA  500

seq1  ATTGTGCTGTTGCCCTCTGGATAGTGTTATTCAGCACCATGAAGACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCTGTTGCCCTCTGGATAGTGTTATTCAGCACCATGAAGACCAAA  550

seq1  GACCAGATCCATGCTTTACTGGAATTACAGGTCAGGTACAACACCTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGATCCATGCTTTACTGGAATTACAGGTCAGGTACAACACCTTTAG  600

seq1  CATGTAGAAGAACAGAGGTAAAATAGGTAAATTAAGATCTCATTAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGAAGAACAGAGGTAAAATAGGTAAATTAAGATCTCATTAATATT  650

seq1  TCATAGCCTCAAAACCAATTTCCATTGTCAAAATTTTTTCAAAACTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCCTCAAAACCAATTTCCATTGTCAAAATTTTTTCAAAACTCAGA  700

seq1  AATCAATACAAAAAGATTGTAATAGTTATATTAATGACACTTTAAACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATACAAAAAGATTGTAATAGTTATATTAATGACACTTTAAACAGA  750

seq1  GGCAAGGGTTTCAAAGACAAGTCTAAAAATGGTGATGATAACAGTGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGGTTTCAAAGACAAGTCTAAAAATGGTGATGATAACAGTGGGGG  800

seq1  AAGTTACATCGCTTCTATGTATAATTTTTGACAAGTTATTAGGGATGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACATCGCTTCTATGTATAATTTTTGACAAGTTATTAGGGATGTTG  850

seq1  TAAGAACTAAATATAAAAGAAATAAAAGCACCTGTCAAATGAAGGAAAAT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAGAACTAAATATAAAAGAAATAAAAGCACCTGTC-AATGAAGGAAAAT  899

seq1  AATTTTCATAGACAGCATGACAATAAATAGTCATATTTTAAAAAGAATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTTTCATAGACAGCATGACAATAAATAGTCATATTTTAAAAAGAATG-  948

seq1  AATCTTTGACAATTTGCAGAGAGACTAATTTCCCAAAGCAATTCCCAATT  1000
      |||||||||||||||||||||||||||||||||||||||| ||||  | |
seq2  AATCTTTGACAATTTGCAGAGAGACTAATTTCCCAAAGCATTTCC--AAT  996

seq1  TCCTGTAGCTCTTGGAATGTCTCAGAAGAGATTTTTGTCCATGCTAACTG  1050
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  TCCTGTAGCTCTTGGAATGTCTCAGAGGAGATTTTTGTTCATGCTAACTG  1046

seq1  ACCGGTGCCATCATTCACTTACAATCTTGCCTATCAAGATATCACTCTTA  1100
      || |||| ||||||||||||||||||||| ||||||  ||||||||||||
seq2  ACGGGTG-CATCATTCACTTACAATCTTG-CTATCAGAATATCACTCTTA  1094

seq1  TTTCCTGCATGCAAGAATAGCTGCCTTTATATTTCATGTCTTCTTTCCAA  1150
      ||| ||||||||||| |||||   ||||||||||||||||||||| | ||
seq2  TTT-CTGCATGCAAG-ATAGCCTGCTTTATATTTCATGTCTTCTTCCGAA  1142

seq1  TATCCAGACTAATACAG  1167
      | |||||||| ||||||
seq2  T-TCCAGACTTATACAG  1158


seq1: chrX_56392680_56393830
seq2: B6Ng01-308D14.g_65_1211 (reverse)

seq1  GGATCATTCTCTTAATACTTAAGCCATATAATTT-ACTCAAGCCACCTCT  49
      |||||| ||||| ||||| |||||||| |||||| |||| ||||||||||
seq2  GGATCAATCTCTGAATACCTAAGCCAT-TAATTTAACTC-AGCCACCTCT  48

seq1  GATTTATATTTAAAATCAAT--TGAGAAAATACTGATTAATTCTGATCCT  97
      || |||||||||||||||||   || |||||||||||  |||||||||| 
seq2  GAATTATATTTAAAATCAATGAAGAAAAAATACTGAT--ATTCTGATCC-  95

seq1  TTAAGAAG-AAAAATCCTATAACCCGAATAAAACTTTCATTGTTCAGTCA  146
      |||||||| ||||||||||||  |||||||||||||||||||||||||||
seq2  TTAAGAAGAAAAAATCCTATA--CCGAATAAAACTTTCATTGTTCAGTCA  143

seq1  TAATTTA-TGAACACTAAGAACATAAAAACCCTGATGGTATTAATCATAG  195
      ||||||| |||||||||||||||| ||||||||||||||| |||||||||
seq2  TAATTTATTGAACACTAAGAACAT-AAAACCCTGATGGTA-TAATCATAG  191

seq1  CTACAAATCCAGCACTTAA-CCATTTAATTAGCCATGGCAGCTGCAAAGC  244
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTACAAATCCAGCACTTAACCCATTTAATTAGCCATGGCAGCTGCAAAGC  241

seq1  TGAATTCAAGGCCTCTAGTTACCTACTCTGCCATTTAATCAAGAGAATCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAAGGCCTCTAGTTACCTACTCTGCCATTTAATCAAGAGAATCT  291

seq1  GAATAGAAATGGCAGATTGCTGGGGTGGAGGTTCCTCCTTGACCATCAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAAATGGCAGATTGCTGGGGTGGAGGTTCCTCCTTGACCATCAAG  341

seq1  AAAGATCATAAGGGAATCAACTTAAGTGTCAGAATGTGTAGATTTACATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCATAAGGGAATCAACTTAAGTGTCAGAATGTGTAGATTTACATT  391

seq1  TTATAGGAAGTCAGCACCGTTTTCAGCAAGGATTGTCAAATAGTTCAATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGAAGTCAGCACCGTTTTCAGCAAGGATTGTCAAATAGTTCAATT  441

seq1  GAAGCTTTTATGGTATAGAAGAATATTTTCCATTGAGGTGAGTGCATGAG  494
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGC-TTTATGGTATAGAAGAATATTTTCCATTGAGGTGAGTGCATGAG  490

seq1  TTGGTTTCCCCAAGAAGCTTGATATTCACCACACTATTCAGTTACCTTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCCCCAAGAAGCTTGATATTCACCACACTATTCAGTTACCTTTG  540

seq1  GCCTGCAGCTAAGAATTAAGTGGTCTAAGGAGAAGAACAGACTAGCAATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGCTAAGAATTAAGTGGTCTAAGGAGAAGAACAGACTAGCAATT  590

seq1  CTGTTACAGAGATAGCTTTATAAGGCTTGGAGTAGTGAGCACCTTTGCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACAGAGATAGCTTTATAAGGCTTGGAGTAGTGAGCACCTTTGCCC  640

seq1  TTAAGAGATCCTATTGGATGAACTTACAGCATATGAGTAAAGGCAGTCAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGATCCTATTGGATGAACTTACAGCATATGAGTAAAGGCAGTCAC  690

seq1  ACTCATTTTTTTTTTAATTTAGTCTTGTCCAACCTGTAGAAAGCACTTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTTTTTTTTAATTTAGTCTTGTCCAACCTGTAGAAAGCACTTTG  740

seq1  TAGATACAACATATTCAGAACCCAAGGTTGCTTCAGCAGTGTCAGGACGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACAACATATTCAGAACCCAAGGTTGCTTCAGCAGTGTCAGGACGC  790

seq1  CCAAAGTCAATAATAGCCATCAGATTCTCTACAGTGAATTTGTTTCAGGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCAATAATAGCCATCAGATTCTCTACAGTGAATTTGTTTCAGGA  840

seq1  TCCTATTCAACAATATTGGAAGATTGCAAAGGAACAGTAGGTCACTAGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTCAACAATATTGGAAGATTGCAAAGGAACAGTAGGTCACTAGTG  890

seq1  AACATAAAGAAGAGTTTTTCCCCCATTGAAACTTTGATGTTTTATGAAAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAGAAGAGTTTTTCCCCCATTGAAACTTTGATGTTTTATGAAAT  940

seq1  TAGAAATTTATAGTACATGGCAAAATATTCACAACACTGGATTCATTTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTATAGTACATGGCAAAATATTCACAACACTGGATTCATTTCT  990

seq1  GGCCCAGTGTTCTTTGAAGAAACAACCTATAGAGTCGGTATTATCATGAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGTGTTCTTTGAAGAAACAACCTATAGAGTCGGTATTATCATGAT  1040

seq1  TTCAATTTTACTGGTGAAGAAAGTGAAGTCTAGCGAGACTAAGTGTTGTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTTACTGGTGAAGAAAGTGAAGTCTAGCGAGACTAAGTGTTGTA  1090

seq1  TCAATGGTTTCTTGGCAAGTACCCAAGTGGCAGTGCCAGTATTTAAACTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGTTTCTTGGCAAGTACCCAAGTGGCAGTGCCAGTATTTAAACTG  1140

seq1  GGAATTC  1151
      |||||||
seq2  GGAATTC  1147


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