BAC Information

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BAC

Clone NameB6Ng01-308P03
Chromosome8 (Build37)X (Build37)
Map Location 65,799,621 - 65,800,422136,573,208 - 136,573,416
singlet/doubletsingletsinglet
Overlap geneSpock3
Upstream geneLOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495, Tll1, LOC100040989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308P03.bB6Ng01-308P03.g
ACCGA101311GA101312
length1,051905
definitionB6Ng01-308P03.b B6Ng01-308P03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,799,621 - 65,800,422)(136,573,208 - 136,573,416)
sequence
gaattctgatgtaatttggataaggattgcactgaatctgtagattgttt
ttggtcattgcttttggccattttttttttttctattttaatcctacaga
ccatgaacgtggaaaatcttttcatcttctaatatttttcaatttctttc
tttaggttttcttgtctttaagtttttattatgagtctttcacttacttt
gttagaatcagcccaagatttttaatgttttttgttgctattatgaaagg
tgtcatttttctaatttctggctaggatcatttgtcatttgtatgtagga
aagctactgatttgtgtacattaacttgtacctgagactttgctgagaga
tcatcagctgttggagtttcttggtggaattgttaggctcctctatgcat
acaatcgtaccgtaatctgcaaggaagattctttgacttcttctgttcct
gtttgtattactttgatatccttcagttgtcttattgttctagctaagac
tatattaagtaagtacggagagaaaggatgaccttgtattctacgtgatt
tcagtgaaattatttgaggttctctccatttaagttgatattggctattg
gctataaatcatcccctattaatttgatgtttgtaccttgtgttcttagt
atcttcaggattttaatcacgaagggtttagattttgccaaaggtctttt
ctgtatcttctgagacaatcatttggtttttgctttgagtctttttatgt
agtagattgcatttattgaagtatctcatttatctaaaacaccaaacttg
aatagtgaatccttcctttaatcagattcccttccatctttctgtgatac
agtcatctgatgaatttaagactaaatctgtatgatgttaaaactaataa
ttttccatcaatactatgtctgtgatgagtggaaattctagtgaattaat
catttaaaatattatacttcattagttatgcattgatacttggtatttag
cttgaaactgatcacattacaacatactgatttatttcatttggactttt
t
gaattccacccaaatcatggacatgaaaaggcagcccactctctctgtgt
ctattcaataaagtactttaagtcttagcttattgtttattattattatt
attattatattgccctagcaataagacaactaaaggagataaagtagact
caaatagaaaggaagaagtcaaagtagtactattcacagattatatgata
atatatatataagtgatgccaaaattttaacagagaactcctacagttga
taatatcttgggtaaagtgctcaaagttaacacacacacacacacacaca
cacacacacacacacacacacaaattattagttttcctatatgcaaatgg
taagtgggctggaaaaataagggacacaacccttcacaaaagccaaaaat
aatataaaatatcttcatgtaaatctaaccaagcaaatgaaagatctgga
tggcaagaacttcacatctttaatttaaaaaataatgaagaagatatcag
aaaatgaaagatcatccatgctaatggatccgtatagttagcataagaaa
aatatccatcctaccaaaagcaatctacagattcagcataattcctatca
aaattcctaaacaataatttacagagcttgaaagatcaatcataccgaga
aacacaaaaactcaagagatttaacacaatcctgtaaaataaaagaactt
ctggaggtatcacaatccctgattctatgtaaaataaaagacaatcatgt
tatagtccacagacccaaagaagctaagtcatgagggctcaagttggatg
cttgaatctcactgagatgagacattgtgggtagatggattgaggggact
tgatgattgaggggatgggaacaggaagaatgaggattggggaaaacaga
aagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_65799621_65800422
seq2: B6Ng01-308P03.b_321_1099

seq1  TAGGATCATTTGTCATTTGTATGTAGGAAAGCTACTGATTTGTGTACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCATTTGTCATTTGTATGTAGGAAAGCTACTGATTTGTGTACATT  50

seq1  AACTTGTACCTGAGACTTTGCTGAGAGATCATCAGCTGTTGGAGTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTACCTGAGACTTTGCTGAGAGATCATCAGCTGTTGGAGTTTCTT  100

seq1  GGTGGAATTGTTAGGCTCCTCTATGCATACAATCGTACCGTAATCTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATTGTTAGGCTCCTCTATGCATACAATCGTACCGTAATCTGCAA  150

seq1  GGAAGATTCTTTGACTTCTTCTGTTCCTGTTTGTATTACTTTGATATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTCTTTGACTTCTTCTGTTCCTGTTTGTATTACTTTGATATCCT  200

seq1  TCAGTTGTCTTATTGTTCTAGCTAAGACTATATTAAGTAAGTACGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTCTTATTGTTCTAGCTAAGACTATATTAAGTAAGTACGGAGAG  250

seq1  AAAGGATGACCTTGTATTCTACGTGATTTCAGTGAAATTATTTGAGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGACCTTGTATTCTACGTGATTTCAGTGAAATTATTTGAGGTTC  300

seq1  TCTCCATTTAAGTTGATATTGGCTATTGGCTATAAATCATCCCCTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTAAGTTGATATTGGCTATTGGCTATAAATCATCCCCTATTAA  350

seq1  TTTGATGTTTGTACCTTGTGTTCTTAGTATCTTCAGGATTTTAATCACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTTGTACCTTGTGTTCTTAGTATCTTCAGGATTTTAATCACGA  400

seq1  AGGGTTTAGATTTTGCCAAAGGTCTTTTCTGTATCTTCTGAGACAATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTAGATTTTGCCAAAGGTCTTTTCTGTATCTTCTGAGACAATCAT  450

seq1  TTGGTTTTTGCTTTGAGTCTTTTTATGTAGTAGATTGCATTTATTGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTGCTTTGAGTCTTTTTATGTAGTAGATTGCATTTATTGAAGT  500

seq1  ATCTCATTTATCTAAAACACCAAACTTGAATAGTGAATCCTTCCTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTTATCTAAAACACCAAACTTGAATAGTGAATCCTTCCTTTAAT  550

seq1  CAGATTCCCTTCCATCTTTCTGTGATACAGTCATCTGATGAATTTAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCCTTCCATCTTTCTGTGATACAGTCATCTGATGAATTTAAGAC  600

seq1  TAAATCTGTATGATGTTAAAACTAATAATTTTCCATCAAATACTATGTCT  650
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAAATCTGTATGATGTTAAAACTAATAATTTTCCATC-AATACTATGTCT  649

seq1  GTGATGAGTGGAAATTCTAGTGAAATTAATCATTTAAAAATATTAATACT  700
      |||||||||||||||||||||| |||||||||||| |||||||| |||||
seq2  GTGATGAGTGGAAATTCTAGTG-AATTAATCATTT-AAAATATT-ATACT  696

seq1  TCATTAGGTTATGCCATTTGAATAACTTGGTTAATTTTAGGCTTGAAAAA  750
      |||||| |||||||   ||||   |||||||  ||||   ||||||||  
seq2  TCATTA-GTTATGC--ATTGA--TACTTGGT--ATTT--AGCTTGAAA--  735

seq1  CCTGAATCACAATTAACAACCATACTGATTTTATTTTCATTTGGGACTTT  800
       ||| ||||||  | |||| |||||||||||   |||||||| |||||||
seq2  -CTG-ATCACA--TTACAA-CATACTGATTT--ATTTCATTT-GGACTTT  777

seq1  TT  802
      ||
seq2  TT  779

seq1: chrX_136573208_136573416
seq2: B6Ng01-308P03.g_143_392 (reverse)

seq1  TTTGTGTGTGTGTATGTGTATATGTGTGTGTGTGTATGTGTGTG------  44
      ||||||||||||| ||||| | ||||||||||||| ||||||||      
seq2  TTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAACT  50

seq1  -TGTG------------------------TGTATGTGTGTGTGTGTGTGT  69
       || |                        |||| | || | | |||    
seq2  TTGAGCACTTTACCCAAGATATTATCAACTGTAGGAGT-TCTCTGTTAAA  99

seq1  ATGTGTG-------TGTGTGTGTGT---------GTGTGTG---TGTGCT  100
      || |  |       | | | | | |          | ||||    || ||
seq2  ATTTTGGCATCACTTATATATATATTATCATATAATCTGTGAATAGTACT  149

seq1  A-TTTGAGACTTTCATTTCTATAAGGTGCCTTGGAAATAGTTTCTTACCA  149
      | |||||    ||| |||||||        |||    || ||| |  || 
seq2  ACTTTGACTTCTTCCTTTCTAT--------TTGAGTCTACTTTATCTCC-  190

seq1  CAGCAATTTAAAGGTAAT-----TAAG---ATATTGATAATAATAATAAT  191
            ||||   ||  |     || |   ||| | ||||||||||||||
seq2  ------TTTAGTTGTCTTATTGCTAGGGCAATA-TAATAATAATAATAAT  233

seq1  AATAAACATCATAGCTAA  209
      ||||||||  | ||||||
seq2  AATAAACAATA-AGCTAA  250