BAC Information

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BAC

Clone NameB6Ng01-312F11
ChromosomeX (Build37)
Map Location 141,220,001 - 141,221,092
singlet/doubletsinglet
Overlap geneZcchc16
Upstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436
Downstream geneLOC666655, LOC623591, Lhfpl1, Amot, EG434860, LOC100039313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312F11.bB6Ng01-312F11.g
ACCGA103834GA103835
length1,2031,085
definitionB6Ng01-312F11.b B6Ng01-312F11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattttcggttggccatctattgctgggcttgtagcctatcatta
aaagtaatttatttccccagtgaggttcccttagaggaaactacattttc
atatgcaagtgctgatcagttggagattgtttctggtttagggatgcgag
gagtatgtgtgcagatcccctatcacctctaggagcccatctggtgcaga
gcccagtagctgtgtgcatgctacctcagtctctgtgagttcatttgtgc
atcaaccctgtgggtttagagggcttctttccaaggtgtccttcatctcc
tccagctcctacactctctctacttcctcctttgaagggttccctgaaca
ctgaggggccacacttgatgaagtaattccatttagggataagtgttcca
aggtttctcactctgtatgtctgactattggtctaggtatttattcctat
ctgctgcaggtggaaatttctctcatgaagaccgagcaaggtactgaact
atgaatatagcagaatatcataagaaacaaattatattgctatgattttg
ttttgttttatatttttaaaacaatagtatttggttttgccctaggtccc
taggccattagtcccagatcctttttttgcccaagcattgttaggtatgg
gttccatctcatgaaggaggccttcagtcaaatcagatattggtttgtta
ctcccacaaacttgtaccattgatgccctagcatattttgcaagcaggac
accattgaagatcaagaaggtttgtggctggtttgctgtttacatttctc
cattggtagcatgcacagtgtatgtgaagactctatgtaagcaccatctc
aacttctcgatattcaaggagctaactagatattcaatactaacagtgct
gtcttcagcaatggggcccttgttgtcagtttatggagagcaacctacac
tcctgtcaagggtttagttgtttgaggttctcatacaacccccttggcca
acaattgaatttgatgtaatcccattcctagtactagacatttcatatgg
tgacacagggcctctgtcttccccaattatagcattcattatatctttcc
aaatagttgcatatcctgctctatttcactaagggtcacttgtctggtaa
cttgccttcacggaaccttgtaacttcaaccctctggggattaatgaggt
cga
gaattctcacctgaggaatactgaatggctcagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaacctcaggtgacagca
gatgctggggaggatgtggagaaagaggaacactcctccattgttggtga
ggttgcaagcttgtacaaccactctggctaatcagtctggctgttcctcc
aaaaattggacatagtactaccagaggatccagcaacacctctcctgggc
atatatccagaagatgttccaacaggtaagaaggatacatgctccatcta
agttttaagagcagtaaaacttgttagattgtgagcatagacataattgt
ctgtttcattggtttctattttttgcaccacaagatagtaactttaatat
atcaagctaaatttgtctctgaaaatatgtaaaatgacatttatccctga
atggaggacatagggctgttgcatgtacttggttattttctcactgtatc
ttttggcaaatccttaaataaagtgctgatttttttttctgagccaaaat
aaataacctagtaacagagggcaggttgggctaagtgaccattatgtata
gttgtgactctgatgctctggaagatggtaatatattcttcagtatagaa
tttgagacagaaaggccaggttgctgctacctaaagtttctggtttggcg
ggaaagttgtaatgcctccactcctctccagacttctcagcttgtgtact
tttacatatttcatctgttctctccatcctcacttgggtcaacactccag
ctgctccactacagttggagagtcatggggaggtgtgatgtgtttgactg
ggccagcagttatctccaaaatgtgcaattatcgagtgctgcatgcctct
ggcaactaacatacatctgccaattttttcctgtttatgaatgctattgg
gggtactgtgtgctaatggcatagaaatcctcatatcagcttctggtgct
gcatatgcaccagatgttgtgctgttcacttcgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_141220001_141221092
seq2: B6Ng01-312F11.g_65_1149

seq1  GAATTCTCACCTGAGGAATACTGAATGGCTCAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACTGAATGGCTCAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAACCTCAGGTGACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAACCTCAGGTGACAGCA  150

seq1  GATGCTGGGGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGGGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGA  200

seq1  GGTTGCAAGCTTGTACAACCACTCTGGCTAATCAGTCTGGCTGTTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAAGCTTGTACAACCACTCTGGCTAATCAGTCTGGCTGTTCCTCC  250

seq1  AAAAATTGGACATAGTACTACCAGAGGATCCAGCAACACCTCTCCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGGACATAGTACTACCAGAGGATCCAGCAACACCTCTCCTGGGC  300

seq1  ATATATCCAGAAGATGTTCCAACAGGTAAGAAGGATACATGCTCCATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCAGAAGATGTTCCAACAGGTAAGAAGGATACATGCTCCATCTA  350

seq1  AGTTTTAAGAGCAGTAAAACTTGTTAGATTGTGAGCATAGACATAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAGAGCAGTAAAACTTGTTAGATTGTGAGCATAGACATAATTGT  400

seq1  CTGTTTCATTGGTTTCTATTTTTTGCACCACAAGATAGTAACTTTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCATTGGTTTCTATTTTTTGCACCACAAGATAGTAACTTTAATAT  450

seq1  ATCAAGCTAAATTTGTCTCTGAAAATATGTAAAATGACATTTATCCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTAAATTTGTCTCTGAAAATATGTAAAATGACATTTATCCCTGA  500

seq1  ATGGAGGACATAGGGCTGTTGCATGTACTTGGTTATTTTCTCACTGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGACATAGGGCTGTTGCATGTACTTGGTTATTTTCTCACTGTATC  550

seq1  TTTTGGCAAATCCTTAAATAAAGTGCTGATTTTTTTTTCTGAGCCAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCAAATCCTTAAATAAAGTGCTGATTTTTTTTTCTGAGCCAAAAT  600

seq1  AAATAACCTAGTAACAGAGGGCAGGTTGGGCTAAGTGACCATTATGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCTAGTAACAGAGGGCAGGTTGGGCTAAGTGACCATTATGTATA  650

seq1  GTTGTGACTCTGATGCTCTGGAAGATGGTAATATATTCTTCAGTATAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGACTCTGATGCTCTGGAAGATGGTAATATATTCTTCAGTATAGAA  700

seq1  TTTGAGACAGAAAGGCCAGGTTGCTGCTACCTAAAGTTTCTGGTTTGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGAAAGGCCAGGTTGCTGCTACCTAAAGTTTCTGGTTTGGCG  750

seq1  GGAAAGTTGTAATGCCTCCACTCCTCTCCAGACTTCTCAGCTTGTGTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTGTAATGCCTCCACTCCTCTCCAGACTTCTCAGCTTGTGTACT  800

seq1  TTTACATATTTCATCTGTTCTCTCCATCCTCACTTGGGTCAACACTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATTTCATCTGTTCTCTCCATCCTCACTTGGGTCAACACTCCAG  850

seq1  CTGCTCCACTACAGTTGGAGAGTCATGGGGAGGTGTGATGTGTTTGACT-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGCTCCACTACAGTTGGAGAGTCATGGGGAGGTGTGATGTGTTTGACTG  900

seq1  GGCCAGCAGTTATCTCCAAAATGTGCAATTATCGAGTGCTGCATGCCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAGTTATCTCCAAAATGTGCAATTATCGAGTGCTGCATGCCTCT  950

seq1  GGCAACTAACATACATCTGCCAATTTTTTCCTGTTTATGAATGCTATTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTAACATACATCTGCCAATTTTTTCCTGTTTATGAATGCTATTGG  1000

seq1  GGGTTACTGTGTGCTTAAATGGCATAGAAATCTCCAATATTCAAGCCTTC  1049
      ||| |||||||||||  ||||||||||||||| |  ||| |||   ||||
seq2  GGG-TACTGTGTGCT--AATGGCATAGAAATC-CTCATA-TCA--GCTTC  1043

seq1  CTGTGCTGCATATGCACCAGATGTTGTGCCTGTTCACTTCGAT  1092
        |||||||||||||||||||||||||| ||||||||||||||
seq2  TGGTGCTGCATATGCACCAGATGTTGTG-CTGTTCACTTCGAT  1085