BAC Information

Click to search

BAC

Clone NameB6Ng01-313H03
ChromosomeX (Build37)
Map Location 118,750,109 - 118,867,083
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh11x, LOC245576, LOC385419, EG434907
Downstream geneEG245575, LOC100039544, Nap1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313H03.bB6Ng01-313H03.g
ACCGA104658GA104659
length1,1511,137
definitionB6Ng01-313H03.b B6Ng01-313H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,750,109 - 118,751,273)(118,865,918 - 118,867,083)
sequence
gaattcacaactgaagactctcaaatggctgagaagcatgtaaagacatg
ttcaaagtccttattgattagagaaataaaaatataaactaccttgacat
taaaaatattttttgagcagtgtttgatagtacattgatctatgtgctcc
actcaattttatttataccgggcaatttggacaactctaagtctctgcat
taactactacacagcaacaaaggtagcttttctgaacaaaactgaaagca
agaaaaagctatatgcataaatgttagtatttaggaataccatttgacaa
cttgactactgagctaaaggttccacataggactatggttctccaccttc
ctaatgctgttagtctctaagatatttcctgatgtttttgtgatcataaa
ccataaaattattttcattgttacttcataactgcaattttgctacttaa
atgaattgtaatgaaaatatctgtgtttctgatggtcttagaagaccacc
atgaaaggatcttttaattcccaaagatgtcaaaatccacaagtttagaa
ctactgatggagaatcactcatgtcccctgtcttgggcttttgaccatgt
ttagagcattaggcatgtaatccttcctgttgagtatgcctcatagccaa
tcagaaagaatgttttcactaccataagcttcatactgtaattatacctg
tggacacatcttaccaatacatcagtgttgtggcatttaggttccagtac
tgggaaataccattaacaaatattttctctcagcaaactccatgtctttt
ggcaataaacaagtagccaacaagaagaaacatttcctggttagttcaag
gtggacttcgcaatatcctgcaataaagtgaatgaccttcagcaagatgt
cttacttccctgttctggggagcaagcaagaacaaagatagtagcctggg
tttttaaaccatatctccagggccttcttgagtatactttttttcttttt
tttattagatattttttttcatttacatttcaatgctatcccgaaagtcc
ctacaccctcccccctctgctcccactactcacttctgctgcttgactgc
attccctatactggggcatatggatcttggcagacaggcctctctctcca
a

gaattcaataagcaaaaagaatgatgaggataaaacacagttgggatagt
tctcaaaagaatgtctaatgactataattctccataaataagctgtttat
tttcactgtctggttcctctgatatcacaggaaaacagaaaagcagttag
atgagctttggtaaaaaaacctatgttttaaaaagggtccacatgatttt
cactgttatcttttgtttgtcatctgtcttgttaatagcttcttcttggc
taacagaacaatgctttggcaatgacccagagtgttctctaaagatgtca
tggttaatttagataaatattagatttcccacatcttctggcagcagagg
ttgttgctcagatcactgcttctagcagtactaaatatcctctgtggctg
aatgctggcaagcagataacctggataaaatatagtctatctagttgaag
ctagcaggagaatgattgcttttccaagacagtatttcaaagtatcttcc
ttctgtctttgatgctatctctcttcaaagatttttctttcttatttcaa
atgctattatctgtggaattagagttaaataatactccttcgaccatagc
ttcagcatactgagaacatttattctttcattttcttctttaattgcact
aattttcttaaatatcattgcctcaataatatgcatacctttctctgaat
tcatatgctactttcaatttctcatttctaaaatattaattacttattag
tattattactactactattattattgtgtttatgatacaaatgtaagcat
aagtgacataaaacttgcatgcaaagccaagcacaaaaattgtgaagttg
tatctctctatctttacttgggtttgaagaactgaattcatttactgggt
gaggctttcacttgctaagtcaaccctcagtccaaaagtaatcattaact
ttttatatgtttcacatttgttgcagtttctattttacacattatgttca
tccttttatcattatcagaagtgcaatagaaaaaaaatgtattataaatg
gacatgatgcttattactaagaatgcaatgtatttatagagagcccgaag
gtatgtattcaaaagttcaaacagcaaaatctctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_118750109_118751273
seq2: B6Ng01-313H03.b_45_1195

seq1  GAATTCACAACTGAAGACTCTCAAATGGCTGAGAAGCATGTAAAGACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTGAAGACTCTCAAATGGCTGAGAAGCATGTAAAGACATG  50

seq1  TTCAAAGTCCTTATTGATTAGAGAAATAAAAATATAAACTACCTTGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTCCTTATTGATTAGAGAAATAAAAATATAAACTACCTTGACAT  100

seq1  TAAAAATATTTTTTGAGCAGTGTTTGATAGTACATTGATCTATGTGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATTTTTTGAGCAGTGTTTGATAGTACATTGATCTATGTGCTCC  150

seq1  ACTCAATTTTATTTATACCGGGCAATTTGGACAACTCTAAGTCTCTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTTTATTTATACCGGGCAATTTGGACAACTCTAAGTCTCTGCAT  200

seq1  TAACTACTACACAGCAACAAAGGTAGCTTTTCTGAACAAAACTGAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACTACACAGCAACAAAGGTAGCTTTTCTGAACAAAACTGAAAGCA  250

seq1  AGAAAAAGCTATATGCATAAATGTTAGTATTTAGGAATACCATTTGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGCTATATGCATAAATGTTAGTATTTAGGAATACCATTTGACAA  300

seq1  CTTGACTACTGAGCTAAAGGTTCCACATAGGACTATGGTTCTCCACCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTACTGAGCTAAAGGTTCCACATAGGACTATGGTTCTCCACCTTC  350

seq1  CTAATGCTGTTAGTCTCTAAGATATTTCCTGATGTTTTTGTGATCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTGTTAGTCTCTAAGATATTTCCTGATGTTTTTGTGATCATAAA  400

seq1  CCATAAAATTATTTTCATTGTTACTTCATAACTGCAATTTTGCTACTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAATTATTTTCATTGTTACTTCATAACTGCAATTTTGCTACTTAA  450

seq1  ATGAATTGTAATGAAAATATCTGTGTTTCTGATGGTCTTAGAAGACCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGTAATGAAAATATCTGTGTTTCTGATGGTCTTAGAAGACCACC  500

seq1  ATGAAAGGATCTTTTAATTCCCAAAGATGTCAAAATCCACAAGTTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGATCTTTTAATTCCCAAAGATGTCAAAATCCACAAGTTTAGAA  550

seq1  CTACTGATGGAGAATCACTCATGTCCCCTGTCTTGGGCTTTTGACCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATGGAGAATCACTCATGTCCCCTGTCTTGGGCTTTTGACCATGT  600

seq1  TTAGAGCATTAGGCATGTAATCCTTCCTGTTGAGTATGCCTCATAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCATTAGGCATGTAATCCTTCCTGTTGAGTATGCCTCATAGCCAA  650

seq1  TCAGAAAGAATGTTTTCACTACCATAAGCTTCATACTGTAATTATACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGAATGTTTTCACTACCATAAGCTTCATACTGTAATTATACCTG  700

seq1  TGGACACATCTTACCAATACATCAGTGTTGTGGCATTTAGGTTCCAGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACATCTTACCAATACATCAGTGTTGTGGCATTTAGGTTCCAGTAC  750

seq1  TGGGAAATACCATTAACAAATATTTTCTCTCAGCAAACTCCATGTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATACCATTAACAAATATTTTCTCTCAGCAAACTCCATGTCTTTT  800

seq1  GGCAATAAACAAGTAGCCAACAAGAAGAAACATTTCCTGGTTAGTTCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAAACAAGTAGCCAACAAGAAGAAACATTTCCTGGTTAGTTCAAG  850

seq1  GTGGACTTCGCAATATCCTGCAATAAAGTGAATGACCTTCAGCAAGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTTCGCAATATCCTGCAATAAAGTGAATGACCTTCAGCAAGATGT  900

seq1  CTTACTTCCCTGTTCTGGGGAGCAAGCAAGAACAAAGATAGTAGCCTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCCCTGTTCTGGGGAGCAAGCAAGAACAAAGATAGTAGCCTGGG  950

seq1  TTTTTAAACCATATCTCCAGGGCCTTCTTGAGTAATAC-TTTTTTCTTTT  999
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  TTTTTAAACCATATCTCCAGGGCCTTCTTGAGT-ATACTTTTTTTCTTTT  999

seq1  TTTTATTAGATATTTTTTTTTCATTTACATTTCAAATGCTATCCCGAAAG  1049
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  TTTTATTAGATA-TTTTTTTTCATTTACATTTC-AATGCTATCCCGAAAG  1047

seq1  TCCCCTACACCCTCCCCCCCTCCCTGCTCCCCAACCTACTCACTCCTGCT  1099
      | ||||||||||||||||   | ||||||||    ||||||||| |||||
seq2  T-CCCTACACCCTCCCCC---CTCTGCTCCC---ACTACTCACTTCTGCT  1090

seq1  GCCTGGCCCTGGCATTCCCCTATACTGGGGCATAT-GATCTTTGCAAGAC  1148
      || || |    ||||| |||||||||||||||||| |||||| || ||||
seq2  GCTTGAC---TGCATT-CCCTATACTGGGGCATATGGATCTTGGC-AGAC  1135

seq1  CAGGGCCTCTC-CTCCAA  1165
         |||||||| ||||||
seq2  --AGGCCTCTCTCTCCAA  1151


seq1: chrX_118865918_118867083
seq2: B6Ng01-313H03.g_65_1201 (reverse)

seq1  AGGAGAGATTTTTTTTGTTTTGTTTTTGAAAATTTTTTGAATACCATACT  50
      |||||||||        |||  | ||||||    ||||||||| ||||| 
seq2  AGGAGAGAT--------TTTGCTGTTTGAA---CTTTTGAATA-CATACC  38

seq1  ATTGGGTGTTTTTCTCTATATATTAACAATGCATTTCTTAGTAATAAGCA  100
       | |||      |||||||| ||  ||| |||| ||||||||||||||||
seq2  TTCGGG-----CTCTCTATAAAT--ACATTGCA-TTCTTAGTAATAAGCA  80

seq1  TCAATGTCCATTTAATAATACATTTTTTTTCTATTTGCACTTCTGGATAA  150
      || |||||||||| ||||||||||||||||||| |||||||||||   | 
seq2  TC-ATGTCCATTT-ATAATACATTTTTTTTCTA-TTGCACTTCTG---AT  124

seq1  AATGAATAAAGGGATGAACATAATGTGTAAAATAGAAACTGCAACAAATG  200
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATG-ATAAAAGGATGAACATAATGTGTAAAATAGAAACTGCAACAAATG  173

seq1  TGAAACATTATAAAAAGTTAATGATTACTTTTTGGACTGAGGGTTGACTT  250
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  TGAAACA-TATAAAAAGTTAATGATTAC-TTTTGGACTGAGGGTTGACTT  221

seq1  AGCAAGTGAAAGCCTCACCCAGTAAATGAATTCAGTTCTTCAAACCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGAAAGCCTCACCCAGTAAATGAATTCAGTTCTTCAAACCCAAG  271

seq1  TAAAGATAGAGAGATACAACTTCACAATTTTTGTGCTTGGCTTTGCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAGAGAGATACAACTTCACAATTTTTGTGCTTGGCTTTGCATGC  321

seq1  AAGTTTTATGTCACTTATGCTTACATTTGTATCATAAACACAATAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTATGTCACTTATGCTTACATTTGTATCATAAACACAATAATAAT  371

seq1  AGTAGTAGTAATAATACTAATAAGTAATTAATATTTTAGAAATGAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGTAATAATACTAATAAGTAATTAATATTTTAGAAATGAGAAAT  421

seq1  TGAAAGTAGCATATGAATTCAGAGAAAGGTATGCATATTATTGAGGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTAGCATATGAATTCAGAGAAAGGTATGCATATTATTGAGGCAAT  471

seq1  GATATTTAAGAAAATTAGTGCAATTAAAGAAGAAAATGAAAGAATAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAAGAAAATTAGTGCAATTAAAGAAGAAAATGAAAGAATAAATG  521

seq1  TTCTCAGTATGCTGAAGCTATGGTCGAAGGAGTATTATTTAACTCTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTATGCTGAAGCTATGGTCGAAGGAGTATTATTTAACTCTAATT  571

seq1  CCACAGATAATAGCATTTGAAATAAGAAAGAAAAATCTTTGAAGAGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATAATAGCATTTGAAATAAGAAAGAAAAATCTTTGAAGAGAGAT  621

seq1  AGCATCAAAGACAGAAGGAAGATACTTTGAAATACTGTCTTGGAAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAAGACAGAAGGAAGATACTTTGAAATACTGTCTTGGAAAAGCA  671

seq1  ATCATTCTCCTGCTAGCTTCAACTAGATAGACTATATTTTATCCAGGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTCCTGCTAGCTTCAACTAGATAGACTATATTTTATCCAGGTTA  721

seq1  TCTGCTTGCCAGCATTCAGCCACAGAGGATATTTAGTACTGCTAGAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGCCAGCATTCAGCCACAGAGGATATTTAGTACTGCTAGAAGCA  771

seq1  GTGATCTGAGCAACAACCTCTGCTGCCAGAAGATGTGGGAAATCTAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGAGCAACAACCTCTGCTGCCAGAAGATGTGGGAAATCTAATAT  821

seq1  TTATCTAAATTAACCATGACATCTTTAGAGAACACTCTGGGTCATTGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAAATTAACCATGACATCTTTAGAGAACACTCTGGGTCATTGCCA  871

seq1  AAGCATTGTTCTGTTAGCCAAGAAGAAGCTATTAACAAGACAGATGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGTTCTGTTAGCCAAGAAGAAGCTATTAACAAGACAGATGACAA  921

seq1  ACAAAAGATAACAGTGAAAATCATGTGGACCCTTTTTAAAACATAGGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGATAACAGTGAAAATCATGTGGACCCTTTTTAAAACATAGGTTT  971

seq1  TTTTACCAAAGCTCATCTAACTGCTTTTCTGTTTTCCTGTGATATCAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCAAAGCTCATCTAACTGCTTTTCTGTTTTCCTGTGATATCAGAG  1021

seq1  GAACCAGACAGTGAAAATAAACAGCTTATTTATGGAGAATTATAGTCATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGACAGTGAAAATAAACAGCTTATTTATGGAGAATTATAGTCATT  1071

seq1  AGACATTCTTTTGAGAACTATCCCAACTGTGTTTTATCCTCATCATTCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCTTTTGAGAACTATCCCAACTGTGTTTTATCCTCATCATTCTT  1121

seq1  TTTGCTTATTGAATTC  1166
      ||||||||||||||||
seq2  TTTGCTTATTGAATTC  1137


| Home | SequenceCutter | Blast | Download |