BAC Information

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BAC

Clone NameB6Ng01-313K16
ChromosomeX (Build37)18 (Build37)
Map Location 47,391,276 - 47,391,54749,036,321 - 49,037,365
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEnox2, 1100001E04Rik, LOC100041697, Olfr1320, Olfr1321, Igsf1, Olfr1322, LOC100040344, Olfr1323
Downstream geneEG665816, Olfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313K16.bB6Ng01-313K16.g
ACCGA104812GA104813
length7861,029
definitionB6Ng01-313K16.b B6Ng01-313K16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,391,276 - 47,391,547)(49,036,321 - 49,037,365)
sequence
gaattcagataatctttaattccgggaaagtttctttacggaagtgacat
ttaagcctgtttttttttgaaaagtgaactgggattagcagatgggaaaa
cacgagggacaaaaagtaatatttaaactactgcaggcttagttcagctg
ggagacccagggcctcccagaacaagttaatgtctcagggttgatctgca
gagcaactagagacatttaaaggatttaggcaggagggtgaaatggtcac
acttaaattttaagattcctctgagtagtgtatagagaacagattggaat
tagacaaggttttgtgcatatatatgaattcagaggctctttgttaactc
caggagacagtgatgtctgaatgaatgagagggccagagaaaggagattc
tgcttaaaacactcgacaccattgcatacactagcaagcctttgttgcaa
ggaccgtgatatagctgtcccttgtgagactaggccggggcctagcaaac
acagaagtggatgctcacagtcaactattggatggatcacagggccccca
atggaggagctagagaaagtacgtaaggagctaaaagatctgcaacccta
taggtggaacaacaatatgaactaaccaataccctggagctcttgactct
agctgcatatgtatcaaaagatggcctagtcggccatcactggaaagaga
ggcccattggtcaggcaaacgttatatgccccagtacaggggaatgccag
ggccaaaaaatgggaatgggtgggtagggggagtgg
gaattcattgatcttatttggctaggttatctgatccattgtgacagaga
ggtgataggggaaaagcacgaaatcccatataggtgacagctaatcctca
aattaaacaggtgggagtgcctaggcagaatagaaatggctgatgaaggt
agataccaagaaagtatccagacaaccaacttttctgcctttattctact
tagttctagaaagtgagtcttcaatttcccttttccttactgatataagg
tgttcagactacttcaaaagttcccaaagtatttgctatacaaatgattg
gcaaataaccactttcccaaacaagtcaaaagtgtcttaattccagcact
cgggaggcagaggcaggcagatttcttacttcaaggtcagcctggtctac
aaagtgagttccaggacaaccagggctatacagagaaaccctgtctcaaa
agaaaaaaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaa
agaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaa
ggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaa
ggaaaggaaaggaaaagaaaagaagaaaagaaaagaaaagaaaaggaaaa
gaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaa
gaaagtgtctgtgctaccataataacttgtcattggaattaaactgtttg
tcatgacagtccatctcttttctttggaatttcataaccttgctcaggtt
tctaatcatcctgttttatccattttctcatctacacaataacaatccct
gtttcactcttctagtacataactatcgaggcttcgtggggcagtgcaca
tgagatagctcccgtagtgctggtatatttgatgcttttctttgattact
ttaattataagtactgaaataaaaatgtcacgtgaggtattagatcatca
tatatttttatgctatcgttcaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_47391276_47391547
seq2: B6Ng01-313K16.b_586_832 (reverse)

seq1  CCACTCTTTTTTATTAGATATTTTCTTTATATGCATTTCAAATGCTAGCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAAAAGTTCCCTATACTTCCCCCATCCTGCTCCCCTACCCACCCACTCCC  100
                           |||  |    |||||||||||||| ||||
seq2  ---------------------CCACTC----CCCCTACCCACCCATTCCC  25

seq1  ACTTCATGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAG  150
      | ||  |||||||||| ||||||||||||| ||||||||| ||||||  |
seq2  ATTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAACGTTTGCCTG  75

seq1  ACCAAGGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTCTGCTA  200
      ||||| ||||||||||| |||||||||||||||||||||||||| || ||
seq2  ACCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATA  125

seq1  CATATGCAGCTAGAAACACGAGCTC-------------------------  225
      ||||||||||||||  || ||||||                         
seq2  CATATGCAGCTAGAGTCAAGAGCTCCAGGGTATTGGTTAGTTCATATTGT  175

seq1  -----------TGGGGGTACAG--------------TGGGTGCTTTCGCT  250
                 | ||| | |||              |  || ||||| ||
seq2  TGTTCCACCTATAGGGTTGCAGATCTTTTAGCTCCTTACGTACTTTCTCT  225

seq1  AGCTCCTCCATTGGGGGCCCTG  272
      ||||||||||||||||||||||
seq2  AGCTCCTCCATTGGGGGCCCTG  247

seq1: chr18_49036321_49037365
seq2: B6Ng01-313K16.g_68_1096

seq1  GAATTCATTGATCTTATTTGGCTAGGTTATCTGATCCATTGTGACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGATCTTATTTGGCTAGGTTATCTGATCCATTGTGACAGAGA  50

seq1  GGTGATAGGGGAAAAGCACGAAATCCCATATAGGTGACAGCTAATCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAGGGGAAAAGCACGAAATCCCATATAGGTGACAGCTAATCCTCA  100

seq1  AATTAAACAGGTGGGAGTGCCTAGGCAGAATAGAAATGGCTGATGAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACAGGTGGGAGTGCCTAGGCAGAATAGAAATGGCTGATGAAGGT  150

seq1  AGATACCAAGAAAGTATCCAGACAACCAACTTTTCTGCCTTTATTCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCAAGAAAGTATCCAGACAACCAACTTTTCTGCCTTTATTCTACT  200

seq1  TAGTTCTAGAAAGTGAGTCTTCAATTTCCCTTTTCCTTACTGATATAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTAGAAAGTGAGTCTTCAATTTCCCTTTTCCTTACTGATATAAGG  250

seq1  TGTTCAGACTACTTCAAAAGTTCCCAAAGTATTTGCTATACAAATGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGACTACTTCAAAAGTTCCCAAAGTATTTGCTATACAAATGATTG  300

seq1  GCAAATAACCACTTTCCCAAACAAGTCAAAAGTGTCTTAATTCCAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAACCACTTTCCCAAACAAGTCAAAAGTGTCTTAATTCCAGCACT  350

seq1  CGGGAGGCAGAGGCAGGCAGATTTCTTACTTCAAGGTCAGCCTGGTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGCAGAGGCAGGCAGATTTCTTACTTCAAGGTCAGCCTGGTCTAC  400

seq1  AAAGTGAGTTCCAGGACAACCAGGGCTATACAGAGAAACCCTGTCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTCCAGGACAACCAGGGCTATACAGAGAAACCCTGTCTCAAA  450

seq1  AGAAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  AGAAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA----  496

seq1  GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA  550
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  -GAAAAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA  545

seq1  GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA  595

seq1  GGAAAGGAAAGGAAAGGAAAAGAAAAGAAGAAAAGAAAAGAAAAGAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAAGGAAAGGAAAAGAAAAGAAGAAAAGAAAAGAAAAGAAAAG  645

seq1  GAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA  695

seq1  GAAAAGAAAAGTGTCTGTGCAACCATAATAACTTGTCATTGGAATTAAAC  750
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAAAG-AAAGTGTCTGTGCTACCATAATAACTTGTCATTGGAATTAAAC  744

seq1  TGTTTGTCATGACAGTCCATCTCTTTTCTTTGGAATTTCATAACCTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCATGACAGTCCATCTCTTTTCTTTGGAATTTCATAACCTTGCT  794

seq1  CAGGTTTCTAATCATCCTGTTTTATCCATTTTCTCATCTACACAATAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCTAATCATCCTGTTTTATCCATTTTCTCATCTACACAATAACA  844

seq1  ATCCCTGTTTCACCTCTTCTAGTACATAACTATCGAGGCTTCTTGGGGCA  900
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  ATCCCTGTTTCA-CTCTTCTAGTACATAACTATCGAGGCTTCGTGGGGCA  893

seq1  GTGCACATGAGATAGCTCCCTTAGTGCCTGGTATATTTGATGCTTTTCCT  950
      |||||||||||||||||||| ||||| |||||||||||||||||||||  
seq2  GTGCACATGAGATAGCTCCCGTAGTG-CTGGTATATTTGATGCTTTTC--  940

seq1  TTTGATTTTACTTTTATTTATAAAGTACTGAAATAAAAATGTCACTTGGG  1000
      |||||  |||| |||| |||| ||||||||||||||||||||||| || |
seq2  TTTGA--TTAC-TTTAATTAT-AAGTACTGAAATAAAAATGTCACGTGAG  986

seq1  GTAATTAGATCATCATATATTTTTATGCTATTTGTTTAAAAAAAA  1045
      || ||||||||||||||||||||||||||| | ||| ||||||||
seq2  GT-ATTAGATCATCATATATTTTTATGCTA-TCGTTCAAAAAAAA  1029