BAC Information

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BAC

Clone NameB6Ng01-317P17
ChromosomeX (Build37)
Map Location 119,887,445 - 120,025,713
singlet/doubletdoublet
Overlap genenone
Upstream geneEG245575, LOC100039544, Nap1l3
Downstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317P17.bB6Ng01-317P17.g
ACCGA107986GA107987
length1,1471,114
definitionB6Ng01-317P17.b B6Ng01-317P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,887,445 - 119,888,593)(120,024,598 - 120,025,713)
sequence
gaattcctaggagtccagctcttccctggcaagacaatgcacaatgggct
gcggaacagccctacctcctggctgcagatgtaggcctgtaggaccctgt
cccagctgctctgctatttctgctgcctttgcatttctgagtggactggc
tttagagagacactggagagaacatagtaatctcccctgattcctggggt
cagagcattctctgaaggcaagctctcctctggcagggaaagtgcacaga
gaactgaggatcagctccacctcctggctacagatgtaggcccaaaggac
cctgtcccagaagctctgttgcttctttggcctgtgctttcctaagtaga
ccctccttagagggacacaggagagaaaatggcgattccccctgagtcct
ggggtcagagcacttcagtgttctagttcttaattcatttccacaacaat
ataactagcactttaatttcttgagtaactttggcatcctaacacagcag
gccattcttttaagaagaaattattttagctatattccactatcatttgt
atcttgaatctgtcaattttgggttttaaagaataactcatttttcaaaa
caaaaatatatcttcccttttcaagaaccctattatgtcaattaatgata
tacatttatacagttaacctttagctaattaagtacagaatattattatt
agctttgtttttcaagaagtgatcaattaaattttgatgaggctttatag
catgattggagactaggacttactaaatatcattgatattttctctgtaa
ttataaagcttaattagaatagattattctaatcatacatagtttggaaa
ataaatataacacatataacagttttaaccagcatctagtttaacagtaa
taatggtctgcatactaacacatatggcatgggttgtaggtcataagtga
ctacttcaatagtgaaaaatacaaagaaagctatgggatattaaagtaaa
atcagtccacttaccacaattctgaaaaaagttttttttttcattaggac
ttaaagttgtattcagtgaaacacctaaatttccaagccatagaaagact
taatcaaccaacctcttttctataaatagtatgtaatgcctgtgggt

gaattcaactcaccagtgatcctaagatcctgggagtgctagggcacctg
caatgtggatagtcctctggggtcatgggactgaccatcaagttcgctcc
caaggcggcctggggctggcactgaccagaaggaaccggagccactggta
gggtgtatttcctatttacttgttcctgctgtcacaggcccctcaaggtt
gttttggaaccttgactcaccagtgatcctcagatcttgggcatgctagg
gtgcctgcagcatggagagtcctctgggttccgtgggacaatccgtggag
tttgcacctaaggttgttgatttttataataatttaaagtaaatataaat
gtagaaactcttctgggctatattaaatcaggttggattaggtttgaaat
aaagagaacatttttttcttatccataatccatgagatgaattcagggga
aaaaaagcataaggaaagcggaaggtgggttagcaagatggtgtgaggct
gcatatgacctactgaatcttttgtgaggattatgttccttaacaaatac
tatgattgagaagacaagctcagaaatctattgaagtatgaggtagtcca
catgaaattctgagttgaacatctcattaataagtgagttctgtgaatgc
tgacagtgtagtctcaagtagaaatgtaaatattagatggataggtttta
taaaaacctaaacaaaatatgtaaaaagtattcttaaaattttccatcaa
gcccaaaggttacattagtttatagaaattaaaatgtagtttccagtgtt
ttagtaatcatcatacattattgatttttgtttttagaaaccagtattgt
atcaggaaaacatgtcaataagaaatgacagcttaaagaaggcatattat
gtagtcttaggctggtaaagtgtgagagagtgtaactaatgacttctatg
tattattgagaaagtcagtcgtaagctaggaaatgtatttcagcaatttt
taccccctagactttggtgaatactttatgcatcccaactgtcacaagaa
agtcattatatgttcaatggataatgtcacaatcttcactaagaatgatc
cttgcctgtctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_119887445_119888593
seq2: B6Ng01-317P17.b_45_1191

seq1  GAATTCCTAGGAGTCCAGCTCTTCCCTGGCAAGACAATGCACAATGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGAGTCCAGCTCTTCCCTGGCAAGACAATGCACAATGGGCT  50

seq1  GCGGAACAGCCCTACCTCCTGGCTGCAGATGTAGGCCTGTAGGACCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAACAGCCCTACCTCCTGGCTGCAGATGTAGGCCTGTAGGACCCTGT  100

seq1  CCCAGCTGCTCTGCTATTTCTGCTGCCTTTGCATTTCTGAGTGGACTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGCTCTGCTATTTCTGCTGCCTTTGCATTTCTGAGTGGACTGGC  150

seq1  TTTAGAGAGACACTGGAGAGAACATAGTAATCTCCCCTGATTCCTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAGACACTGGAGAGAACATAGTAATCTCCCCTGATTCCTGGGGT  200

seq1  CAGAGCATTCTCTGAAGGCAAGCTCTCCTCTGGCAGGGAAAGTGCACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATTCTCTGAAGGCAAGCTCTCCTCTGGCAGGGAAAGTGCACAGA  250

seq1  GAACTGAGGATCAGCTCCACCTCCTGGCTACAGATGTAGGCCCAAAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGGATCAGCTCCACCTCCTGGCTACAGATGTAGGCCCAAAGGAC  300

seq1  CCTGTCCCAGAAGCTCTGTTGCTTCTTTGGCCTGTGCTTTCCTAAGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCCAGAAGCTCTGTTGCTTCTTTGGCCTGTGCTTTCCTAAGTAGA  350

seq1  CCCTCCTTAGAGGGACACAGGAGAGAAAATGGCGATTCCCCCTGAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTAGAGGGACACAGGAGAGAAAATGGCGATTCCCCCTGAGTCCT  400

seq1  GGGGTCAGAGCACTTCAGTGTTCTAGTTCTTAATTCATTTCCACAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAGAGCACTTCAGTGTTCTAGTTCTTAATTCATTTCCACAACAAT  450

seq1  ATAACTAGCACTTTAATTTCTTGAGTAACTTTGGCATCCTAACACAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGCACTTTAATTTCTTGAGTAACTTTGGCATCCTAACACAGCAG  500

seq1  GCCATTCTTTTAAGAAGAAATTATTTTAGCTATATTCCACTATCATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTTTTAAGAAGAAATTATTTTAGCTATATTCCACTATCATTTGT  550

seq1  ATCTTGAATCTGTCAATTTTGGGTTTTAAAGAATAACTCATTTTTCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAATCTGTCAATTTTGGGTTTTAAAGAATAACTCATTTTTCAAAA  600

seq1  CAAAAATATATCTTCCCTTTTCAAGAACCCTATTATGTCAATTAATGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATATATCTTCCCTTTTCAAGAACCCTATTATGTCAATTAATGATA  650

seq1  TACATTTATACAGTTAACCTTTAGCTAATTAAGTACAGAATATTATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTATACAGTTAACCTTTAGCTAATTAAGTACAGAATATTATTATT  700

seq1  AGCTTTGTTTTTCAAGAAGTGATCAATTAAATTTTGATGAGGCTTTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTTTTTCAAGAAGTGATCAATTAAATTTTGATGAGGCTTTATAG  750

seq1  CATGATTGGAGACTAGGACTTACTAAATATCATTGATATTTTCTCTGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTGGAGACTAGGACTTACTAAATATCATTGATATTTTCTCTGTAA  800

seq1  TTATAAAGCTTAATTAGAATAGATTATTCTAATCATACATAGTTTGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGCTTAATTAGAATAGATTATTCTAATCATACATAGTTTGGAAA  850

seq1  ATAAATATAACACATATAACAGTTTTAACCAGCATCTAGTTTAACAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATAACACATATAACAGTTTTAACCAGCATCTAGTTTAACAGTAA  900

seq1  TAATGGTCTGCATACTAACACATATGGCAT-GGTTGTAGGTCATAAGTGA  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAATGGTCTGCATACTAACACATATGGCATGGGTTGTAGGTCATAAGTGA  950

seq1  CTACTTCAATAGTG-AAAATACAAAGAAAGCTATGGGATATTAAAGTAAA  998
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTACTTCAATAGTGAAAAATACAAAGAAAGCTATGGGATATTAAAGTAAA  1000

seq1  ATCAAGTCACTTA-CACAATTCTTGAAAAAAGTTTTTTTTTTCATTTAGG  1047
      ||||   |||||| |||||||| ||||||||||||||||||||| |||||
seq2  ATCAGTCCACTTACCACAATTC-TGAAAAAAGTTTTTTTTTTCA-TTAGG  1048

seq1  ACTTAAAGTTGTATTCAGTGAAACACTAAAATTTTCCAAG-CATAGAAAG  1096
      ||||||||||||||||||||||||||  ||| |||||||| |||||||||
seq2  ACTTAAAGTTGTATTCAGTGAAACACCTAAA-TTTCCAAGCCATAGAAAG  1097

seq1  ACTTTAATTCAACCAAACTC-TTTCTAATTAAATAGTAATGTAATG-CTG  1144
      ||||  | |||||||| ||| ||||||  |||||||| |||||||| |||
seq2  ACTT--AATCAACCAACCTCTTTTCTA--TAAATAGT-ATGTAATGCCTG  1142

seq1  TGGGT  1149
      |||||
seq2  TGGGT  1147


seq1: chrX_120024598_120025713
seq2: B6Ng01-317P17.g_66_1179 (reverse)

seq1  TCTAGACA-GCAAGAATCATTTCTTAGTGAGAAATGTGACATTATCCCAT  49
      |||||||| ||||| |||| ||||||||||  | |||||||||||||  |
seq2  TCTAGACAGGCAAGGATCA-TTCTTAGTGAAGATTGTGACATTATCCATT  49

seq1  GGACATATAAATGACTTTC-TGTGACAGTTGGGAATGGCAATAAAGTATT  98
      | |||||| |||||||||| ||||||||||||| |||   ||||||||||
seq2  GAACATAT-AATGACTTTCTTGTGACAGTTGGG-ATG--CATAAAGTATT  95

seq1  TCAACCAAAGTCTAGGGG--TAAAATTGCTGAAATACATTTCCTAGCTTA  146
         |||||||||||||||   |||||||||||||||||||||||||||||
seq2  --CACCAAAGTCTAGGGGGTAAAAATTGCTGAAATACATTTCCTAGCTTA  143

seq1  CGACTGACTATCTCAATAATACATAGAAGTCATTAGTTACACTCTCTCAC  196
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGACTTTCTCAATAATACATAGAAGTCATTAGTTACACTCTCTCAC  193

seq1  ACTTTACCAGCCTAAGACTACATAATATGCCTTCTTTAAGCTGTCATTTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCAGCCTAAGACTACATAATATGCCTTCTTTAAGCTGTCATTTC  243

seq1  TTATTGACATGTTTTCCTGATACAATACTGGTTTCTAAAAACAAAAATCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGACATGTTTTCCTGATACAATACTGGTTTCTAAAAACAAAAATCA  293

seq1  ATAATGTATGATGATTACTAAAACACTGGAAACTACATTTTAATTTCTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTATGATGATTACTAAAACACTGGAAACTACATTTTAATTTCTAT  343

seq1  AAACTAATGTAACC-TTGGGCTTGATGGAAAATTTTAAGAATACTTTTTA  395
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAACTAATGTAACCTTTGGGCTTGATGGAAAATTTTAAGAATACTTTTTA  393

seq1  CATATTTTGTTTAGGTTTTTATAAAACCTATCCATCTAATATTTACATTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTGTTTAGGTTTTTATAAAACCTATCCATCTAATATTTACATTT  443

seq1  CTACTTGAGACTACACTGTCAGCATTCACAGAACTCACTTATTAATGAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGAGACTACACTGTCAGCATTCACAGAACTCACTTATTAATGAGA  493

seq1  TGTTCAACTCAGAATTTCATGTGGACTACCTCATACTTCAATAGATTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACTCAGAATTTCATGTGGACTACCTCATACTTCAATAGATTTCT  543

seq1  GAGCTTGTCTTCTCAATCATAGTATTTGTTAAGGAACATAATCCTCACAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTCTTCTCAATCATAGTATTTGTTAAGGAACATAATCCTCACAA  593

seq1  AAGATTCAGTAGGTCATATGCAGCCTCACACCATCTTGCTAACCCACCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCAGTAGGTCATATGCAGCCTCACACCATCTTGCTAACCCACCTT  643

seq1  CCGCTTTCCTTATGCTTTTTTTCCCCTGAATTCATCTCATGGATTATGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTTCCTTATGCTTTTTTTCCCCTGAATTCATCTCATGGATTATGGA  693

seq1  TAAGAAAAAAATGTTCTCTTTATTTCAAACCTAATCCAACCTGATTTAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAAATGTTCTCTTTATTTCAAACCTAATCCAACCTGATTTAAT  743

seq1  ATAGCCCAGAAGAGTTTCTACATTTATATTTACTTTAAATTATTATAAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCAGAAGAGTTTCTACATTTATATTTACTTTAAATTATTATAAAA  793

seq1  ATCAACAACCTTAGGTGCAAACTCCACGGATTGTCCCACGGAACCCAGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAACCTTAGGTGCAAACTCCACGGATTGTCCCACGGAACCCAGAG  843

seq1  GACTCTCCATGCTGCAGGCACCCTAGCATGCCCAAGATCTGAGGATCACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCATGCTGCAGGCACCCTAGCATGCCCAAGATCTGAGGATCACT  893

seq1  GGTGAGTCAAGGTTCCAAAACAACCTTGAGGGGCCTGTGACAGCAGGAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTCAAGGTTCCAAAACAACCTTGAGGGGCCTGTGACAGCAGGAAC  943

seq1  AAGTAAATAGGAAATACACCCTACCAGTGGCTCCGGTTCCTTCTGGTCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATAGGAAATACACCCTACCAGTGGCTCCGGTTCCTTCTGGTCAG  993

seq1  TGCCAGCCCCAGGCCGCCTTGGGAGCGAACTTGATGGTCAGTCCCATGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCCCCAGGCCGCCTTGGGAGCGAACTTGATGGTCAGTCCCATGAC  1043

seq1  CCCAGAGGACTATCCACATTGCAGGTGCCCTAGCACTCCCAGGATCTTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGACTATCCACATTGCAGGTGCCCTAGCACTCCCAGGATCTTAG  1093

seq1  GATCACTGGTGAGTTGAATTC  1116
      |||||||||||||||||||||
seq2  GATCACTGGTGAGTTGAATTC  1114


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