BAC Information

Click to search

BAC

Clone NameB6Ng01-318J12
ChromosomeX (Build37)
Map Location 143,115,850 - 143,116,973
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623697, LOC623731, LOC237096, LOC100039558, EG666730
Downstream geneEG245663, Htr2c, Il13ra2, V1rb10, Lrch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318J12.bB6Ng01-318J12.g
ACCGA108441GA108442
length1,153784
definitionB6Ng01-318J12.b B6Ng01-318J12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgttgacatactttgtagtacaagtcttatggaaataaataaa
taaattctctgagattctgcttgtctgagaatgtcattagctctccttta
ttccacaatgaagacttcactgcatctattgttcttctttggaagttttt
ttttttttccccctgttcaaatcccattctctccagacctgtaaaagatc
tacagagaagtcggtagtcacatgaaccctttgttgttttcttttttttt
tttttttaaacaacttttttttttttttaagatttatttatttattatat
gtaagtacactgtagctgtcctcagacactccaaaagagggcgtcagatc
ttgttacagatggttgtgagccaccatgtggttgctgggatttgaactct
ggaccttcggaagagcagtcgggtgctcttacccactgagccatctcacc
agccctcctttgttgttttcttttcctttttattttgtgaactttttttt
taattttccttcttacctttcagaacatattgactatactttcttgaact
aaatttgtactgatgacatttaacctcaaatagtcagatatttgtatcat
tctgtggaactaggaaactttctcttttgtctttattaagtttctatatc
tttgacatgttcaagttcactatgaaccctaataaccagaatatttgttt
tttctcagaattccctcaattttcttcctttgattttattacttcacact
catgaacacaaaacatcctttgcttcggtctcataagtaggtaagaatat
aagcattgtttactatgtccagtttactcttgggggattttctttttctt
tttccctttctttcttttctttcttttctttctttctttctttctttctt
cttctttctttctttctttcttcttctttcttctttttttttggtatttt
atgcctgagtacttatcttttatgtcatttcttctttctttcctcttttt
cccataataaattggtttctggtgtttctggcacctattcaatcttcccc
ttctcaaattggaattaaccttctctttttttataatcatccattatata
acttacaaacaacaaaacattcaacccttagtggaactcttaatttagga
ttg

gaattctcatctgcactctaaatattttccttattcccacatataagagt
gaaaccttctttataataaagttctaaccttcctcaaagaaacttggtgg
gtttttgttttttttgttttgtttcatttgtttgtttgtttgtttttgtt
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttcgcacacagagaccattacaaaac
ccacagctgatcaacatgcagaaagcaactgattatggagtacccagctc
caacagattcatatacaacacagcctccacacttataggaacattgtaga
aggaggggaagaaaggctatagcagctagaggatcaggaagtgtgttgtg
attttgcctttcctaaaattaacaggggacttttacttatgatacttcaa
caatatggttgatcgaacaagatctgaacaatgacaattctaacagacat
gctaagacataacgggggaaatctcatgggcccccaccccaagacaaaac
acaagagtcaactcatgactgctgagagagggaaaagtaatttttcccag
aaagcgttcccataaatggctatcccacatcaagtggtcagccctgaaac
taaacagattcaatggattatacttatatacttatgtgtgatatatgtag
caataataatcaaagaaaaagaggtcataaatttgtaaaggatgaaggat
gaggtagaatataggaggaattgaagggagtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_143115850_143116973
seq2: B6Ng01-318J12.b_46_1198 (reverse)

seq1  CAATACTAAAT--AGAGT--CACTA--GGTTGAATG--TTGTTGTTGGT-  41
      |||| ||||||  |||||  |||||  |||||||||  |||||||| || 
seq2  CAATCCTAAATTAAGAGTTCCACTAAGGGTTGAATGTTTTGTTGTTTGTA  50

seq1  AGT--TATAAT-GATGATTATAAAAAGAGA----GGTAAT--CAATTTGA  82
      |||  |||||| |||||||||||||| |||    | ||||  ||||||||
seq2  AGTTATATAATGGATGATTATAAAAAAAGAGAAGGTTAATTCCAATTTGA  100

seq1  GAGGGAGA----TGGATAGGTG-CAG-AACACAGGAA--CAATT--ATAT  122
      || || ||    || ||||||| ||| |||||  |||  |||||   |||
seq2  GAAGGGGAAGATTGAATAGGTGCCAGAAACACCAGAAACCAATTTATTAT  150

seq1  GGG-AAAAGAGG-AAGAA--GAGAAATGACAT-AAAGAT-AGTACTCAGG  166
      ||| |||||||| |||||   ||||||||||| |||||| ||||||||||
seq2  GGGAAAAAGAGGAAAGAAAGAAGAAATGACATAAAAGATAAGTACTCAGG  200

seq1  CATAAAATACCAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  216
      ||||||||||||||||||||   |||||||||   |||||||||||||||
seq2  CATAAAATACCAAAAAAAAA--GAAGAAAGAA--GAAGAAAGAAAGAAAG  246

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAAGAAAG  266
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAA--GAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAAGAAAG  294

seq1  AAAGAGAAAAAGAAAAAGAAAAT-CCCCAAGAGTAAACTGGACATAGTAA  315
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAGGGAAAAAGAAAAAGAAAATCCCCCAAGAGTAAACTGGACATAGTAA  344

seq1  ACAATGCTTATATTCTTACCTACTTATGAGACCGAAGCAAAGGATGTTTT  365
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTTATATTCTTACCTACTTATGAGACCGAAGCAAAGGATGTTTT  394

seq1  GTGTTCATGAGTGTGAAGTAATAAAATCAAAGGAAGAAAATTGAGGGAAT  415
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATGAGTGTGAAGTAATAAAATCAAAGGAAGAAAATTGAGGGAAT  444

seq1  TCTGAGAAAAAACAAATATTCTGGTTATTAGGGTTCATAGTGAACTTGAA  465
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAAAAACAAATATTCTGGTTATTAGGGTTCATAGTGAACTTGAA  494

seq1  CATGTCAAAGATATAGAAACTTAATAAAGACAAAAGAGAAAGTTTCCTAG  515
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAAAGATATAGAAACTTAATAAAGACAAAAGAGAAAGTTTCCTAG  544

seq1  TTCCACAGAATGATACAAATATCTGACTATTTGAGGTTAAATGTCATCAG  565
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGAATGATACAAATATCTGACTATTTGAGGTTAAATGTCATCAG  594

seq1  TACAAATTTAGTTCAAGAAAGTATAGTCAATATGTTCTGAAAGGTAAGAA  615
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTTAGTTCAAGAAAGTATAGTCAATATGTTCTGAAAGGTAAGAA  644

seq1  GGAAAATTAAAAAAAAAGTTCACAAAATAAAAAGGAAAAGAAAACAACAA  665
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTAAAAAAAAAGTTCACAAAATAAAAAGGAAAAGAAAACAACAA  694

seq1  AGGAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC  715
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC  744

seq1  CGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  765
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  794

seq1  CTGTAACAAGATCTGACGCCCTCTTCTGGAGTGTCTGAGGACAGCTACAG  815
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGTAACAAGATCTGACGCCCTCTTTTGGAGTGTCTGAGGACAGCTACAG  844

seq1  TGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAAAGTTGT  865
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAAAGTTGT  894

seq1  TTAAAAAAAAAAAAAAAAGAAAACAACAAAGGGTTCATGTGACTACCGAC  915
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAAAAGAAAACAACAAAGGGTTCATGTGACTACCGAC  944

seq1  TTCTCTGTAGATCTTTTACAGGTCTGGAGAGAATGGGATTTGAACAGGGG  965
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTAGATCTTTTACAGGTCTGGAGAGAATGGGATTTGAACAGGGG  994

seq1  GAAAAAAAAAAAAACTTCCAAAGAAGAACAATAGATGCAGTGAAGTCTTC  1015
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAAACTTCCAAAGAAGAACAATAGATGCAGTGAAGTCTTC  1044

seq1  ATTGTGGAATAAAGGAGAGCTAATGACATTCTCAGACAAGCAGAATCTCA  1065
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGAATAAAGGAGAGCTAATGACATTCTCAGACAAGCAGAATCTCA  1094

seq1  GAGAATTTATTTATTTATTTCCATAAGACTTGTACTACAAAGTATGTCAA  1115
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTATTTATTTATTTCCATAAGACTTGTACTACAAAGTATGTCAA  1144

seq1  CAGGAATTC  1124
      |||||||||
seq2  CAGGAATTC  1153


| Home | SequenceCutter | Blast | Download |