BAC Information

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BAC

Clone NameB6Ng01-319C09
ChromosomeX (Build37)
Map Location 144,653,807 - 144,684,629
singlet/doubletdoublet
Overlap geneLOC434864, EG624096
Upstream geneIl13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184, LOC100039511, LOC666812, LOC100039519
Downstream geneLOC100039545, LOC666837, LOC100039553, LOC100034729, LOC666861, EG666864, LOC434866, EG666868, EG624260, LOC434865, EG624310, Ott, LOC666888, LOC100039598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319C09.bB6Ng01-319C09.g
ACCGA108853GA108854
length116851
definitionB6Ng01-319C09.b B6Ng01-319C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,653,807 - 144,654,052)(144,683,779 - 144,684,629)
sequence
aaagatatgcctgtctctacctcccatgtgcttgggttaaaggcatgtac
taccactacagcttggtgatatattgaggaaggaaggaaggaaggaagga
aggaagggagggaggc
gaattctccccactggggaaagaaatcagttatgttcctactcttcctgt
tcccccttcctctcttagttactgttgtattgctgtgaaaagacaatata
accagtgaaacttagaaatcactcaattggggctagcttacaggtttaga
gagttagtccaaggccattccactggagagtggtagcaggcaggcaggga
gggaagcaggcagatgtggcactggagcagtagctgagagcttacatctt
ggcagcataaaataaggagagagaagaaagggggttctgggtctgctgta
ggttctgaaatctcaaagaccaccgccagcacaccccctccaaggccgtg
cttctacttctttttaaacagaacaccaactggggaggaaacattcaagt
ctatacttctttttgtttgtttgtttttgttttttgtttgtgttttgaga
cagggtttctctgtgtagccctggctgtcctggaactcactctgtagacc
aggttggcctcgaactcagaaatctacctgcctctgcctcccaagtgctg
ggattaatggcatgcaccaccaatgcccggatcaagtatatacttctatg
ggggtcattttcactcaaaccatcacattctgctcctaaaggtggagcag
ggtcttactttgtagcattgactagaataaaacttgttacattgttatta
tctaggcaattgtgaggctggtttgtcaggagatcaaggttattttcatc
tatgtagtcagtctatagtatatgcgacacaatttcaatgaacaacaata
acagcaacaacaaacaaaacaaaacctaatggagagggggaggagtgggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_144653807_144654052
seq2: B6Ng01-319C09.b_52_167

seq1  AAAGATATGCCTGTCTCTACCTCCCATGTGCTTGGGTTAAAGGCATGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATGCCTGTCTCTACCTCCCATGTGCTTGGGTTAAAGGCATGTAC  50

seq1  TACCACTACAGCTTGGTGATATATTGAGGAAGGAAGGAAGGAAGGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTACAGCTTGGTGATATATTGAGGAAGGAAGGAAGGAAGGAAGGA  100

seq1  AGGAAGGAAGGAAGG-GAGGGAGGGAGGGAGGGAGGGAGGGAAATTTTTA  149
      ||||||| ||| |||                                   
seq2  AGGAAGGGAGGGAGGC----------------------------------  116

seq1  TAAGGAAACTAATATGAAAGTAGTCAGTAGAGAGCCTGTGTAGAATTTTT  199
                                                        
seq2  --------------------------------------------------  116

seq1  TAGTGCTGAGTTCCATGACTAGCACTGCAAAAGGAAGGGAGGGAGGC  246
                                                     
seq2  -----------------------------------------------  116

seq1: chrX_144683779_144684629
seq2: B6Ng01-319C09.g_67_917 (reverse)

seq1  CCCCCACTCCTCCCCCTCTCCATTAGGTTTTGTTTTGTTTGTTGTTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACTCCTCCCCCTCTCCATTAGGTTTTGTTTTGTTTGTTGTTGCTG  50

seq1  TTATTGTTGTTCATTGAAATTGTGTCGCATATACTATAGACTGACTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGTTCATTGAAATTGTGTCGCATATACTATAGACTGACTACAT  100

seq1  AGATGAAAATAACCTTGATCTCCTGACAAACCAGCCTCACAATTGCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAATAACCTTGATCTCCTGACAAACCAGCCTCACAATTGCCTAG  150

seq1  ATAATAACAATGTAACAAGTTTTATTCTAGTCAATGCTACAAAGTAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACAATGTAACAAGTTTTATTCTAGTCAATGCTACAAAGTAAGAC  200

seq1  CCTGCTCCACCTTTAGGAGCAGAATGTGATGGTTTGAGTGAAAATGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCACCTTTAGGAGCAGAATGTGATGGTTTGAGTGAAAATGACCC  250

seq1  CCATAGAAGTATATACTTGATCCGGGCATTGGTGGTGCATGCCATTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAGTATATACTTGATCCGGGCATTGGTGGTGCATGCCATTAATC  300

seq1  CCAGCACTTGGGAGGCAGAGGCAGGTAGATTTCTGAGTTCGAGGCCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGAGGCAGAGGCAGGTAGATTTCTGAGTTCGAGGCCAACC  350

seq1  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCT  400

seq1  GTCTCAAAACACAAACAAAAAACAAAAACAAACAAACAAAAAGAAGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAACACAAACAAAAAACAAAAACAAACAAACAAAAAGAAGTATA  450

seq1  GACTTGAATGTTTCCTCCCCAGTTGGTGTTCTGTTTAAAAAGAAGTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAATGTTTCCTCCCCAGTTGGTGTTCTGTTTAAAAAGAAGTAGAA  500

seq1  GCACGGCCTTGGAGGGGGTGTGCTGGCGGTGGTCTTTGAGATTTCAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGCCTTGGAGGGGGTGTGCTGGCGGTGGTCTTTGAGATTTCAGAAC  550

seq1  CTACAGCAGACCCAGAACCCCCTTTCTTCTCTCTCCTTATTTTATGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCAGACCCAGAACCCCCTTTCTTCTCTCTCCTTATTTTATGCTGC  600

seq1  CAAGATGTAAGCTCTCAGCTACTGCTCCAGTGCCACATCTGCCTGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTAAGCTCTCAGCTACTGCTCCAGTGCCACATCTGCCTGCTTCC  650

seq1  CTCCCTGCCTGCCTGCTACCACTCTCCAGTGGAATGGCCTTGGACTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCCTGCCTGCTACCACTCTCCAGTGGAATGGCCTTGGACTAACT  700

seq1  CTCTAAACCTGTAAGCTAGCCCCAATTGAGTGATTTCTAAGTTTCACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACCTGTAAGCTAGCCCCAATTGAGTGATTTCTAAGTTTCACTGG  750

seq1  TTATATTGTCTTTTCACAGCAATACAACAGTAACTAAGAGAGGAAGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGTCTTTTCACAGCAATACAACAGTAACTAAGAGAGGAAGGGGG  800

seq1  AACAGGAAGAGTAGGAACATAACTGATTTCTTTCCCCAGTGGGGAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAGAGTAGGAACATAACTGATTTCTTTCCCCAGTGGGGAGAATT  850

seq1  C  851
      |
seq2  C  851