BAC Information

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BAC

Clone NameB6Ng01-319E10
ChromosomeX (Build37)
Map Location 134,879,445 - 134,879,869
singlet/doubletsinglet
Overlap geneIl1rapl2
Upstream gene1700025D03Rik
Downstream geneNrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319E10.bB6Ng01-319E10.g
ACCGA108948GA108949
length1,1701,164
definitionB6Ng01-319E10.b B6Ng01-319E10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgtttagctctgtaccccattttaaaaataggtttacttgat
tttctagagtccagcttcttgagttctttgtatatattggatattagtcc
cctatcagacttaggattggtaaagatcctttcccaatctgttggtggcc
tttttgtcttattgacggtgtcttttgccttgcagaagctttgcaatttt
ataaggttccatttgtcgattctcaaacttacagcacaaaattcaggtga
cagcagatgctggagaggatgtggaaaaagagaacactcttccattgctg
gtgggattgcaagctggtccaaacactctgaaaatcagtttggcgggacc
tcagaaaattgggcatagtactaccggaagatccagcaatatctatcctg
ggcatatacccagaagatgttccaacttgtaataaggacacatactccac
tatgttcatagtagccttatttataatagccagaagctggaaagaaccca
gatgtccttcaacagaagaatggatacagaaaatgtgatacatttacaca
atggagtcctacacagctattaaaaacaatgcatttatgaaatttaatta
caaatagatgtatctggaagatatcatcttgagtgaggcaacctaatcac
aaaagaacacacatgatatgcactcactgataagtggatattagcccaga
agcttagaatactcaagatacaatttgtaaaacagatgaaactcaagaag
aaggaggaccaaagtgtgtatactttgttccttcttagaatggggaacaa
aatagccatggaaggagttacagagacaaatttcagagcagagcatgaag
gaatgaccatccccagactgccccagttgggggatccccccccccataac
aatcaccaaacccagatgccaataagagcctgctgacaggagcctgatat
agctgtctcctgagaggctctgctagtgccctggcaaatacagaagtgga
tgctcacagtcatcattgcatggagcacaggtgcccaatgatgagccaga
gaaatactctgaaggtatgaaggggactgaaagccccatagagtaccatt
caaatatgaataaccagtacctcagagctccgtgaacgtatcaacgaatc
caaaagaaaaaccacttttg

gaattctcttgcctctgcctccctaatgctaggattacagcatgagctgc
tacaaccagcttttcccatgggtgctgacaatcaaaccctggtccttatg
cttgcacagcaagcattttactgactgagccatctccacaggtgccatct
tctatttcagctttaatctcctttatgattagcactgttgggcatttttc
caatatatcttgtttgacttctattaacacgtgtttattcattttccttg
ccaattttataattgctttattaactgactattaaggaattccttgtatg
gtatagatactaatccctgtttagatgtttggcttgcaaatatttcagtc
tgcttgttttcttgttacatattaattattctgatagtagtctcatttgt
ctgtttttacttttatttatctgagctttggtgtttatgtttaaaggaaa
acaaaataaaaactacataggctgtttagtttttctttcagggtttccca
cagtacttttaaggtgtttttcttttaaatctgtacgcttaattattcta
ctttaaatggatttttgtttatagtataataatcaaatttaattctttgg
cattaagtaatccaagtttctaaacataatttatcagagactgatatttt
accactgtatattcttgtcacttttgtcaaaaatcaattgaccatataag
catgggttcatttatgggctctatattgtgtttcattggacaatttatct
cttcttatatcaacaacacatttattctcactactgctgctttgtggtac
aatttgaaatcaatatatagctgtattctttaaaatcatatttattttta
tgtgtatccatacgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcgacata
tttaagcatgagactgcagaagcccagcggaagacagtagaatctcctaa
gctgtaattgtagatggttgtgactgtcatatagacactggaaccaaata
tgggctcttgcaagatgatatggtgctgttaatcaatgtgccattctctc
agtactagcattttggttgtgtgttttgtttattcataggtgggcctggc
tatattagctttatagctccactgtgcactctgattctcaaacggattac
tggaacattcaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_134879445_134879869
seq2: B6Ng01-319E10.g_931_1231 (reverse)

seq1  ACTTGAATGTTCCAGTAAGCCATAGTTGCCATAGTACTATAGTTCATATT  50
      |||||||||||||||||| || |  |||    || |  | ||| || | |
seq2  ACTTGAATGTTCCAGTAATCCGT--TTG----AGAATCAGAGTGCACAGT  44

seq1  TAATTATTTGTCACCAAACTGGTATAACACTAGCTACAATCACTTGATGA  100
        |      |  |  || ||  ||      |||| |    ||| | ||||
seq2  GGA------GCTATAAAGCTAATA------TAGCCAGGCCCACCT-ATGA  81

seq1  CTGAGGA--------AATCAAAATGACTGT-CTTAGCCATGTCATTCATT  141
       | |  |        || |||||||   || || ||  |           
seq2  ATAAACAAAACACACAACCAAAATGCTAGTACTGAGAGA-----------  120

seq1  TTTGCCACATGGTGTTGCAGAGTACTCTGTCCTTGCCTAGTGCAATAGAA  191
        || |||||  || |  | || ||  | || |   ||  ||||| ||  
seq2  -ATGGCACAT--TGATTAACAGCACCATATCAT---CT--TGCAAGAG--  160

seq1  GGAGAAAGGTTCTAAGTGGTAACTCATTTAGAAATTCTAATTTGTTGTCT  241
                            | |||            ||||| | || 
seq2  ----------------------CCCAT------------ATTTGGT-TC-  174

seq1  GGACAGTTTAAGATCTGACACAATACTAATTTCACA--GATCTATCAATG  289
         |||| |   || |||||           |||||   ||||| |||| 
seq2  ---CAGTGT-CTATATGACA----------GTCACAACCATCTA-CAAT-  208

seq1  TCTATAGCTAGTCTATGATTTTACTGGTTGAACAAATTAAAGTAAAAGAA  339
        || ||||  |    |||| |||                          
seq2  --TACAGCT--TAGGAGATTCTAC--------------------------  228

seq1  AGACAAATTGTGTTGAGTAGCATGAGTTTATGCATCTTCACACACACACT  389
              ||| ||  |     || | || ||||   |||  |  | | |
seq2  --------TGTCTTCCG----CTGGGCTTCTGCAGTCTCATGCTTA-AAT  265

seq1  CACACACAACACACACACACACACACACATACACAC  425
          | ||||||||||||||||||||||| ||||||
seq2  ATGTCGCAACACACACACACACACACACACACACAC  301


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