BAC Information

Click to search

BAC

Clone NameB6Ng01-320I12
ChromosomeX (Build37)5 (Build37)
Map Location 66,836,361 - 66,836,53257,416,728 - 57,417,893
singlet/doubletsingletsinglet
Overlap geneAff2
Upstream geneLOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
Downstream geneEG666577, 1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320I12.bB6Ng01-320I12.g
ACCGA109875GA109876
length9191,182
definitionB6Ng01-320I12.b B6Ng01-320I12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,836,361 - 66,836,532)(57,416,728 - 57,417,893)
sequence
gaattcaatgaaaatgaaaacatatcatactcaaacttatgggacacaat
gaaaacagtgctaataggaaaattcatagcactaagtgccttcataaaga
aattggagacatcccattcaagcaacataacagcacatctcgatgtttag
aacagaaagaagcaaacacaaggaagagtagtagaaggcaggaaatagtc
aaactcagggctgaaatcaagcagttggaaagatagagaatgccgggcac
tggtggcacatccctttaatcccagtgcttgggaggcagaggcaggtgga
tttctgagttcaaggccagcctggtctacagagtgagttccatgatagcc
agagctacacagagaaaccctgacttgaaaaagcaaaatagaaaaaaaaa
aaaaaaaagaaaagaaaaaagaaaagatagagaactatacaaccaaaggc
tggttcattgggataataaaagagatagataaaaaccttaagccaaacta
actaaaggacccagagacagtatccaaattaacaaaatcagaaacaaaaa
gggagacataaaaacagaacctgaggaaatcagaaaaatcatcagaatat
tctacaaaacctatactctacaaaactgaaaaatctagatgaaatagatg
attttcttggacagatagcaggtaccaaatttatcaaggtcagataaacc
acctaaacagttctatagccactaaggaaatagaaataatcattaaaaat
ctcccaaccaaaaagaactaatatcaatactccttaaactatttcacaaa
atgatggggtccaacattgacaagagtcagaggtcatcaagaactagaga
tatctggtaggtaaataagaaaacacacaaacacacacacacacacacac
acacacagagagagagaga
gaattccataaccctttctcctatctgaacataatttgagaaggacagtc
ttgtaaagatcctatggaaataactgcagttattgggaaatcatggttac
aataatggtgtcatgtccagaagatagtaagctttctgtttatttgtggg
ctcattattattccacatctttcttaatgtcttctgaatgttagaaggaa
aaatataagtgacttcttttgggctaaccattcaactgtcactgttacca
gtattctgaaaagtcatgggattgtgcatttactatgctcactgcaaaga
aaaaaaatgtctaatcattattaagggtcacatttgtctttaggtataga
catagatattttaaaataaaattgaattccatacctgcctcaatattgag
tcaataacatgtgattagagaagttttaggacctaggagagagtttatta
atagtattctgatattgggacatggtaataagtcaatttttaatgacatt
ttgtaagactcatagatgaaatctagtacatctctcaaacctcattaaag
atgtttctttttgcagtacactttaattaactcagagacccactaatggt
caaggtacagggaataagacaatgaggaatgcttggctataaacaggatg
tctgtatcagttcccatcctctctagggtcacaaatcatagtctaagagg
agactgagaaactgtaagaacaagatgcaatgggtaaatgtaagaaagca
agacaatgttatcctagcacagcattacatgtgctcatatgaatatcaag
catttgagacagtatgcatcagacctgcagtctagtagatagacagagag
acgtccccccccccccacctaagaatttggcacttggatagttagttgtt
cctgatgcacatgaaagggtacatatctaagagtatggtgaaagcaccaa
ctgttagtttgaaggttagggtatgacatatggggtggaactgggagagt
gaagaggctgaacattataatttattaatatgaaactttgctattctacc
tccaatcagcttgaatcccacacaacaaaaccaggacttaataacccctc
ccttaattaacttaattttaaataccatttcatattccaagtccataatc
ttctactgttcctttagtgtatttataaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_66836361_66836532
seq2: B6Ng01-320I12.b_291_462 (reverse)

seq1  TTCTTTT-TTTTTTGTTTTTGTTTTTTGTTTTTTTTTTTCTGAGACAGGG  49
      ||||||| |||||| ||||| |||| | ||||  ||||||  || |||||
seq2  TTCTTTTCTTTTTTTTTTTTTTTTTCTATTTTGCTTTTTC-AAGTCAGGG  49

seq1  TTTCTCTGTGTAGCCCTGGCTATCCTGGAACTAACTCTATAGACCAGGCT  99
      |||||||||||||| ||||||||| ||||||| ||||| |||||||||||
seq2  TTTCTCTGTGTAGCTCTGGCTATCATGGAACTCACTCTGTAGACCAGGCT  99

seq1  GGCCTTGAACTTAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATT  149
      ||||||||||| ||||||||||||||||||||||||||||  ||||||||
seq2  GGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGCACTGGGATT  149

seq1  AAAGGCATGTGCCACCACTGCCC  172
      ||||| ||||||||||| |||||
seq2  AAAGGGATGTGCCACCAGTGCCC  172

seq1: chr5_57416728_57417893
seq2: B6Ng01-320I12.g_64_1245

seq1  GAATTCCATAACCCTTTCTCCTATCTGAACATAATTTGAGAAGGACAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAACCCTTTCTCCTATCTGAACATAATTTGAGAAGGACAGTC  50

seq1  TTGTAAAGATCCTATGGAAATAACTGCAGTTATTGGGAAATCATGGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGATCCTATGGAAATAACTGCAGTTATTGGGAAATCATGGTTAC  100

seq1  AATAATGGTGTCATGTCCAGAAGATAGTAAGCTTTCTGTTTATTTGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGTGTCATGTCCAGAAGATAGTAAGCTTTCTGTTTATTTGTGGG  150

seq1  CTCATTATTATTCCACATCTTTCTTAATGTCTTCTGAATGTTAGAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATTATTCCACATCTTTCTTAATGTCTTCTGAATGTTAGAAGGAA  200

seq1  AAATATAAGTGACTTCTTTTGGGCTAACCATTCAACTGTCACTGTTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGTGACTTCTTTTGGGCTAACCATTCAACTGTCACTGTTACCA  250

seq1  GTATTCTGAAAAGTCATGGGATTGTGCATTTACTATGCTCACTGCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGAAAAGTCATGGGATTGTGCATTTACTATGCTCACTGCAAAGA  300

seq1  AAAAAAATGTCTAATCATTATTAAGGGTCACATTTGTCTTTAGGTATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTCTAATCATTATTAAGGGTCACATTTGTCTTTAGGTATAGA  350

seq1  CATAGATATTTTAAAATAAAATTGAATTCCATACCTGCCTCAATATTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATATTTTAAAATAAAATTGAATTCCATACCTGCCTCAATATTGAG  400

seq1  TCAATAACATGTGATTAGAGAAGTTTTAGGACCTAGGAGAGAGTTTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACATGTGATTAGAGAAGTTTTAGGACCTAGGAGAGAGTTTATTA  450

seq1  ATAGTATTCTGATATTGGGACATGGTAATAAGTCAATTTTTAATGACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTCTGATATTGGGACATGGTAATAAGTCAATTTTTAATGACATT  500

seq1  TTGTAAGACTCATAGATGAAATCTAGTACATCTCTCAAACCTCATTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGACTCATAGATGAAATCTAGTACATCTCTCAAACCTCATTAAAG  550

seq1  ATGTTTCTTTTTGCAGTACACTTTAATTAACTCAGAGACCCACTAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTTTTGCAGTACACTTTAATTAACTCAGAGACCCACTAATGGT  600

seq1  CAAGGTACAGGGAATAAGACAATGAGGAATGCTTGGCTATAAACAGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTACAGGGAATAAGACAATGAGGAATGCTTGGCTATAAACAGGATG  650

seq1  TCTGTATCAGTTCCCATCCTCTCTAGGGTCACAAATCATAGTCTAAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCAGTTCCCATCCTCTCTAGGGTCACAAATCATAGTCTAAGAGG  700

seq1  AGACTGAGAAACTGTAAGAACAAGATGCAATGGGTAAATGTAAGAAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGAAACTGTAAGAACAAGATGCAATGGGTAAATGTAAGAAAGCA  750

seq1  AGACAATGTTATCCTAGCACAGCATTACATGTGCTCATATGAATATCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGTTATCCTAGCACAGCATTACATGTGCTCATATGAATATCAAG  800

seq1  CATTTGAGACAGTATGCATCAGACCTGCAGTCTAGTAGATAGACAGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGACAGTATGCATCAGACCTGCAGTCTAGTAGATAGACAGAGAG  850

seq1  ACGT-CCCCCCCCCCCACCTAAGAATTTGGCACTTGGATAGTTAGTTGTT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCCCCCCCCCCCACCTAAGAATTTGGCACTTGGATAGTTAGTTGTT  900

seq1  CCTGATGCACATG-AAGGGTACATATCTAAGAGTATGGTGAAAGCACCAA  948
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCACATGAAAGGGTACATATCTAAGAGTATGGTGAAAGCACCAA  950

seq1  CTG-TAG-TTGAAGGTTA-GGTATGACATAT-GGGTGGAACTGGGAGAAG  994
      ||| ||| |||||||||| |||||||||||| ||||||||||||||| ||
seq2  CTGTTAGTTTGAAGGTTAGGGTATGACATATGGGGTGGAACTGGGAG-AG  999

seq1  TGAAGAGGCTGAACATTATAATTTATT-ATATGAAACTTTGCTA-TCTAC  1042
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  TGAAGAGGCTGAACATTATAATTTATTAATATGAAACTTTGCTATTCTAC  1049

seq1  TCCAAATCAGC-TGAATCCAACACAAC-AAACCAAGAC-TAATAA-CACT  1088
        | ||||||| ||||||| ||||||| |||||| ||| |||||| | ||
seq2  CTCCAATCAGCTTGAATCCCACACAACAAAACCAGGACTTAATAACCCCT  1099

seq1  CC--TAATTTAC-TAATTTT-AATACCATTTCCATATTCAAAGTTTCATA  1134
      ||  ||||| || ||||||| |||||||||| ||||||| ||| | ||| 
seq2  CCCTTAATTAACTTAATTTTAAATACCATTT-CATATTCCAAG-TCCAT-  1146

seq1  AATCTTCTACTG-TCCTT--ATGTA-TTATAAACCA  1166
      |||||||||||| |||||   |||| ||||||||||
seq2  AATCTTCTACTGTTCCTTTAGTGTATTTATAAACCA  1182