BAC Information

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BAC

Clone NameB6Ng01-322J20
ChromosomeX (Build37)
Map Location 9,812,213 - 9,813,280
singlet/doubletsinglet
Overlap genenone
Upstream geneLancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb, EG333452, LOC100042867, Dynlt3, 1700054O13Rik, 4930557A04Rik, Sytl5, LOC436194, Srpx, Rpgr
Downstream geneOtc, 4933416E14Rik, Tspan7, EG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1, LOC668982, Ppia-psx_105.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322J20.bB6Ng01-322J20.g
ACCGA111411GA111412
length1,2541,059
definitionB6Ng01-322J20.b B6Ng01-322J20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacagccccagcagagctcagttcccaagataatccattgatat
gtgccaagagaggactccaattggaatagtattctgtagtttagaaagca
agggggtggggtatagggaaggacttgcagggcagaaaacagaggggaaa
atggtataaatacaatatcaacaagtaaaataaatatttcttaaagaaac
aggctagaaatagactagaaaaaaatgggagtgaggcctccagggaagtg
ctcctgctaagcttccaggcacctgagtggagcctgacggcatgtgaggg
atctccgtgcactttggacaataggaacctggaggctgccgacctgcctg
gacctcggaccttttagctaaccgagtgatccaactcctgcttcgccagt
gcccaccttcctactgcaggaagtgccccaccgggcccatctaggattct
gtgtgtgtgccaaggttgccagatgggatactatgttaatgagatggaga
ttcttgctttctgtcatgtctacaccattgcagccctgggaagtccacat
atgtatacacacacacacacacacacacacacacacacacacacacacac
acaaatttaaaaataaaagcaaaatagctttttaaatagaagaaaaaacc
aaagtgcctgtaattcacacttgtcactttccttacttgaaaagttctgg
gagaccacatattggataggagaaagatcagaactcaagggaatattcca
acaatgtggcgcttttgcatcctgttttatttttgctttgtaaaaaataa
aatacttatccacttacttggggaaccacttggcatgctccttccagggg
tcatcttcctttcttcccagttgcccaagcttccgccacaggagaaacac
tgcacagtgtcccttttacctacagatgcaggaaagggtgtgactggcca
gcaatgacaccagctgtgtctttggagctggccatactgcacatttactt
tataacacaggccaatatatggctgcattgtgtgttatgttgtatgtata
agatattatagcaacccataatgcttacactaatatatatttaagcagaa
gaaattgtacctaaattaatgacctacacttaaggtctaatataacccct
cctcactagtaatgctccatacaaaatatgtctccaatggacctacttac
acttccaaaatgctctacaaatagtgatatccactcttcctggtgaatga
cgca
gaattcagtgacagctaatgaggtagctgttctttataataaatagcttt
atagtataaaaaagttatttgcctcggttgaactgagatggccaaataga
aattcagactttgatccagtgtgctgatgaattataatattggtgacatt
tccagtcctgacagattttagaggtgcatattggggtattatctgatttg
atttgaaagctgaggcattgacacagaaatatatgagaggattttagtag
gccctgtgaaggctgaatccttaattctcatccaatctcccttgccagat
taagaaagctctcctaccttgcctgatgaaactgttgttaccttgcttga
agctagtatttcacctgggagttgccctgccatgtgaagtgggttctctt
ccccacctcacttccctaccagctgtcagatttaacatgccccagatggg
aagaggtactaacaaagtcaaaagccgaggaaagccaacacatttctaga
tttctatttttttttttttgaaaaaaaaaatctcgaaagtgtacatggga
aagtatgtgcacagagaagtgtgtatgctgagaagtacacatggagacta
cgaggatgcttagtcaaggctgagaaacgcaatcttagatcagtgtggat
cgaacacacctcaaaattccttgtagactgggcaggtattccaaatccag
gtgtacagaaaggcgagggatccagtgagcaaagcttcccacggggtatg
tcccttagagggagagaagggctgagccacttatccatgcatcttcattt
gtagtggttaatgggttccagagaggtagggataggggaataaatacatt
taaaggattggtggcaaaaaggttttcacaagatgggaaacagactttcc
taataagactgttgatgggtcctgtgaagttcattggagacataccaaat
ggaggatcttaaagctgcttatctattactctatatttctaaaataccta
ctctgactctacaatgtcacatgcatttaagtatgtaaacgtttagaatg
tctcatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_9812213_9813280
seq2: B6Ng01-322J20.g_64_1122 (reverse)

seq1  CACATGAGACATTTCTAAAACGTTTACATACTTAAAATGCAATGTGACAT  50
      ||||||||||| |||| |||||||||||||||| |||||| |||||||| 
seq2  CACATGAGACA-TTCT-AAACGTTTACATACTT-AAATGC-ATGTGACA-  45

seq1  TTGTAAGAGTCAGAGTAGTTTATTTTAGAAATATAGAGTAATAGATAAGG  100
      |||| |||||||||||||  |||||||||||||||||||||||||||| |
seq2  TTGT-AGAGTCAGAGTAG-GTATTTTAGAAATATAGAGTAATAGATAA-G  92

seq1  CAGCCTTAAGATTCCTCCATTTGGTATGTCTTCCAATGAACCTTCACAGG  150
      |||| |||||| |||||||||||||||||| ||||||||| |||||||||
seq2  CAGCTTTAAGA-TCCTCCATTTGGTATGTC-TCCAATGAA-CTTCACAGG  139

seq1  A-CCATCAACAGTCTTAATTTAGGAAAGTCTGTTTCCATCCTTGTGAAAA  199
      | |||||||||||||||  ||||||||||||||||||   ||||||||||
seq2  ACCCATCAACAGTCTTA--TTAGGAAAGTCTGTTTCCCATCTTGTGAAAA  187

seq1  CCTTTTTGCCACCAATCC-TTAAATGTATTTATTCCCCTATCCCTACCTC  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTTTTTGCCACCAATCCTTTAAATGTATTTATTCCCCTATCCCTACCTC  237

seq1  TCTGGAA-CCATTAACCACTACAAATGAAGATGCATGGATAAGTGGCTCA  297
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACCCATTAACCACTACAAATGAAGATGCATGGATAAGTGGCTCA  287

seq1  GCCCTTCTCTCCCTCTAAGGGACATACCCCGTGGGAAGCTTTGCTCACTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCTCTCCCTCTAAGGGACATACCCCGTGGGAAGCTTTGCTCACTG  337

seq1  GATCCCTCGCC-TTCTGTACACCTGGATTTGGAATACCTGCCCAGTCTAC  396
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTCGCCTTTCTGTACACCTGGATTTGGAATACCTGCCCAGTCTAC  387

seq1  AAGGAATTTTGAGGTGTGTTCGATCCACACTGATCTAAGATTGCGTTTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTTTGAGGTGTGTTCGATCCACACTGATCTAAGATTGCGTTTCT  437

seq1  CAGCCTTGACTAAGCATCCTCGTAGTCTCCATGTGTACTTCTCAGCATAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGACTAAGCATCCTCGTAGTCTCCATGTGTACTTCTCAGCATAC  487

seq1  ACACTTCTCTGTGCACATACTTTCCCATGTACACTTTCGAGATTTTTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTCTGTGCACATACTTTCCCATGTACACTTTCGAGATTTTTTTT  537

seq1  TTCAAAAAAAAAAAAATAGAAATCTAGAAATGTGTTGGCTTTCCTCGGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAAAAAAAATAGAAATCTAGAAATGTGTTGGCTTTCCTCGGCT  587

seq1  TTTGACTTTGTTAGTACCTCTTCCCATCTGGGGCATGTTAAATCTGACAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTGTTAGTACCTCTTCCCATCTGGGGCATGTTAAATCTGACAG  637

seq1  CTGGTAGGGAAGTGAGGTGGGGAAGAGAACCCACTTCACATGGCAGGGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGGGAAGTGAGGTGGGGAAGAGAACCCACTTCACATGGCAGGGCA  687

seq1  ACTCCCAGGTGAAATACTAGCTTCAAGCAAGGTAACAACAGTTTCATCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGGTGAAATACTAGCTTCAAGCAAGGTAACAACAGTTTCATCAG  737

seq1  GCAAGGTAGGAGAGCTTTCTTAATCTGGCAAGGGAGATTGGATGAGAATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTAGGAGAGCTTTCTTAATCTGGCAAGGGAGATTGGATGAGAATT  787

seq1  AAGGATTCAGCCTTCACAGGGCCTACTAAAATCCTCTCATATATTTCTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCAGCCTTCACAGGGCCTACTAAAATCCTCTCATATATTTCTGT  837

seq1  GTCAATGCCTCAGCTTTCAAATTAAATCAGATAATACCCCAATATGCACC  896
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTCAATGCCTCAGCTTTCAAATCAAATCAGATAATACCCCAATATGCACC  887

seq1  TCTAAAATCTGTCAGGACTGGAAATGTCACCAATATTATAATTCATCAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATCTGTCAGGACTGGAAATGTCACCAATATTATAATTCATCAGC  937

seq1  ACACTGGATCAAAGTCTGAATTTCTATTTGGCCATCTCAGTTCAACCGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGATCAAAGTCTGAATTTCTATTTGGCCATCTCAGTTCAACCGAG  987

seq1  GCAAATAACTTTTTTATACTATAAAGCTATTTATTATAAAGAACAGCTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAACTTTTTTATACTATAAAGCTATTTATTATAAAGAACAGCTAC  1037

seq1  CTCATTAGCTGTCACTGAATTC  1068
      ||||||||||||||||||||||
seq2  CTCATTAGCTGTCACTGAATTC  1059