BAC Information

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BAC

Clone NameB6Ng01-324P21
ChromosomeX (Build37)
Map Location 142,736,706 - 142,821,547
singlet/doubletdoublet
Overlap genenone
Upstream geneLhfpl1, Amot, EG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
Downstream geneEG666730, EG245663, Htr2c, Il13ra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324P21.bB6Ng01-324P21.g
ACCGA113164GA113165
length1,1671,113
definitionB6Ng01-324P21.b B6Ng01-324P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,820,379 - 142,821,547)(142,736,706 - 142,737,761)
sequence
gaattctagacagaaaattagtgaaatcttttatatcttacccagagctt
tttaatgtatgaattgatggatggatcttctaaaacaggcattttctgtg
cactgttgaccttcctgtcaaaattgagctatggcaacatttatatttgc
caagctcagtaatattgctactttgagctgctatatccctacctttaaaa
ggttaccagtaagaaacacttatgttctaaaaatgaattaaaagcatcaa
catacttctccacaattgaccatatctcctaggctatccattacttctat
tttattaatatttggagcctccaacaaacatgttttaatagaaaataatt
tcattattttttccattctgtattaacatgagttatctattgagaataaa
ttggtggacaatattttgtaaatgactaaaatgtttgggttccaattcta
catctaacactaaagaacttcagatcttgggtaaattttgtctttctaga
ccttgtttattcttatatcagaccacagtatgttttcttaaaatctacat
tgataaagccagagttgcatattaaattaatatctctaccatttatcaca
tgtgtacagttcccccctgtgaagaggataattctaatgtatagagtaag
aggaaggattaattttattaaggaatagaaagttgaactatagcatttac
aaaacagtaagtattaactgtactaatctagaaattttgattcataatca
gatgttgttttgaatcttccaattttatatttcaccttgtatgatttagc
ataaccaccttgacagtaatgcctctttcaagtgatcttccaaagcattt
agtacagcatttttctaaactatggcaggaagtaatgcaaaaagcttaaa
cctatataacagaatgaaaatgatgatgcaactctctattaccagctgtc
tccagaaaatttatacatagcagcttttcaaaaatatggaggtttaaaga
aaaatatatagtatcattgtcaatgaagaataagctatttgaaattgttg
actgacttcacattctaactcattagaatatgacaggtatcatgagctga
tgctaagagttaattgatgggtgcctttaagaattccattggtagtaatt
aattattcacttagaca

gaattctctgtttagctttgtaccgcatttttaattggattatttggttt
tttggaggtcagcttcataagttctttatatattttggatataaacccac
tattggatgtggggttgttgaagattttttcctaatttgtaggttgctga
tttgtcctacagaagcttttcagtttcatgaggtcccatttatcaattgt
tgatcttagagcctgagccttgggaaccttaactcattggtgatttccta
aacagtataggtttttctttgttatgttccatgggggagagcccagacta
ctgtaagtgggtccatccctgggttggtgaacttgggtgctattaaaaag
caggctgaacaagccatgaagaacaaaccactgagcatcactcccccatg
gcctctgcatcagctcttgtctccaagctcctgcactgagttcctgccct
gaaatctctggatactgaactacaaaacaaaactgaaataaactgttgct
tttccactttgatttttggtcatggtgttcatcagagtattagaaaccct
gactatgataagtagtaaaatcaaatttaaagccttaaatcttcctttcc
aagtggttactctaaacatacagaaattcactaagttgtatagtctttgg
gtctgattattatcagtgtgtgattttttttatatttgcaaatttttata
gaaaactttattcttaaaaatgagagactatttctccagctaagtgcttt
ggctttcatggatctttttatggttctgatgcatataaacacattaaatg
ctatgagatgttaccctttaaacgatttcatttgttaaaatatgattttc
taaaacaattagaccttaaaaccatcttatacaatgcctctagctacata
acacctgtggaacacatttgggaacctaattcattttttcattttgcaag
atttgaagtaaagaagaaatgtgttccctagatgttttatatatatatta
tgtatacaatattatgtatatcctctctgcacatcgctttcaccatacaa
attcttatataagtaatggtaccacttatttaatagtattttctgaataa
aggcttctttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_142820379_142821547
seq2: B6Ng01-324P21.b_49_1215 (reverse)

seq1  TGTCTAAGTGATTTAATAAATATACTTACCACTG--AATCTTAAA-GCAC  47
      |||||||||||  |||| ||| ||| ||||| ||  | ||||||| ||||
seq2  TGTCTAAGTGA-ATAATTAAT-TAC-TACCAATGGAATTCTTAAAGGCAC  47

seq1  CCATTCATTTACTC-TAGCATCAGCTCATGATACCCTGTCAATATCTAAA  96
      ||||  ||| |||| |||||||||||||||||| |||||||   ||||| 
seq2  CCATCAATTAACTCTTAGCATCAGCTCATGATA-CCTGTCATATTCTAA-  95

seq1  TTGGAGTTAGAATGTGAAAGTCAGTCAACAATTTCAAATAGCTTA-TCTT  145
         ||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  --TGAGTTAGAATGTG-AAGTCAGTCAACAATTTCAAATAGCTTATTCTT  142

seq1  CATTGACAATGATACTATATATTTTTCTTT-AACCTCCATATTTTTGAAA  194
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTGACAATGATACTATATATTTTTCTTTAAACCTCCATATTTTTGAAA  192

seq1  AGCTGCTATGTATAAATTTTCTGGAGACAGCTGGTAATAGAGAGTTGCAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTATGTATAAATTTTCTGGAGACAGCTGGTAATAGAGAGTTGCAT  242

seq1  CATCATTTTCATTCTGTTATATAGGTTTAAGCTTTTTGCATTACTTCCTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTTCATTCTGTTATATAGGTTTAAGCTTTTTGCATTACTTCCTG  292

seq1  CCATAGTTTAGAAAAATGCTGTACTAAATGCTTTGGAAGATCACTTGAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTTAGAAAAATGCTGTACTAAATGCTTTGGAAGATCACTTGAAA  342

seq1  GAGGCATTACTGTCAAGGTGGTTATGCTAAATCATACAAGGTGAAATATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATTACTGTCAAGGTGGTTATGCTAAATCATACAAGGTGAAATATA  392

seq1  AAATTGGAAGATTCAAAACAACATCTGATTATGAATCAAAATTTCTAGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGAAGATTCAAAACAACATCTGATTATGAATCAAAATTTCTAGAT  442

seq1  TAGTACAGTTAATACTTACTGTTTTGTAAATGCTATAGTTCAACTTTCTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAGTTAATACTTACTGTTTTGTAAATGCTATAGTTCAACTTTCTA  492

seq1  TTCCTTAATAAAATTAATCCTTCCTCTTACTCTATACATTAGAATTATCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAATAAAATTAATCCTTCCTCTTACTCTATACATTAGAATTATCC  542

seq1  TCTTCACAGGGGGGAACTGTACACATGTGATAAATGGTAGAGATATTAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGGGGGGAACTGTACACATGTGATAAATGGTAGAGATATTAAT  592

seq1  TTAATATGCAACTCTGGCTTTATCAATGTAGATTTTAAGAAAACATACTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGCAACTCTGGCTTTATCAATGTAGATTTTAAGAAAACATACTG  642

seq1  TGGTCTGATATAAGAATAAACAAGGTCTAGAAAGACAAAATTTACCCAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGATATAAGAATAAACAAGGTCTAGAAAGACAAAATTTACCCAAG  692

seq1  ATCTGAAGTTCTTTAGTGTTAGATGTAGAATTGGAACCCAAACATTTTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGTTCTTTAGTGTTAGATGTAGAATTGGAACCCAAACATTTTAG  742

seq1  TCATTTACAAAATATTGTCCACCAATTTATTCTCAATAGATAACTCATGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACAAAATATTGTCCACCAATTTATTCTCAATAGATAACTCATGT  792

seq1  TAATACAGAATGGAAAAAATAATGAAATTATTTTCTATTAAAACATGTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAGAATGGAAAAAATAATGAAATTATTTTCTATTAAAACATGTTT  842

seq1  GTTGGAGGCTCCAAATATTAATAAAATAGAAGTAATGGATAGCCTAGGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGCTCCAAATATTAATAAAATAGAAGTAATGGATAGCCTAGGAG  892

seq1  ATATGGTCAATTGTGGAGAAGTATGTTGATGCTTTTAATTCATTTTTAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTCAATTGTGGAGAAGTATGTTGATGCTTTTAATTCATTTTTAGA  942

seq1  ACATAAGTGTTTCTTACTGGTAACCTTTTAAAGGTAGGGATATAGCAGCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGTGTTTCTTACTGGTAACCTTTTAAAGGTAGGGATATAGCAGCT  992

seq1  CAAAGTAGCAATATTACTGAGCTTGGCAAATATAAATGTTGCCATAGCTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGCAATATTACTGAGCTTGGCAAATATAAATGTTGCCATAGCTC  1042

seq1  AATTTTGACAGGAAGGTCAACAGTGCACAGAAAATGCCTGTTTTAGAAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGACAGGAAGGTCAACAGTGCACAGAAAATGCCTGTTTTAGAAGA  1092

seq1  TCCATCCATCAATTCATACATTAAAAAGCTCTGGGTAAGATATAAAAGAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATCAATTCATACATTAAAAAGCTCTGGGTAAGATATAAAAGAT  1142

seq1  TTCACTAATTTTCTGTCTAGAATTC  1169
      |||||||||||||||||||||||||
seq2  TTCACTAATTTTCTGTCTAGAATTC  1167


seq1: chrX_142736706_142737761
seq2: B6Ng01-324P21.g_129_1178

seq1  TTCATAAGTTCTTTATATATTTTGGATATAAACCCACTATTGGATGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGTTCTTTATATATTTTGGATATAAACCCACTATTGGATGTGGG  50

seq1  GTTGTTGAAGATTTTTTCCTAATTTGTAGGTTGCTGATTTGTCCTACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGAAGATTTTTTCCTAATTTGTAGGTTGCTGATTTGTCCTACAGA  100

seq1  AGCTTTTCAGTTTCATGAGGTCCCATTTATCAATTGTTGATCTTAGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCAGTTTCATGAGGTCCCATTTATCAATTGTTGATCTTAGAGCC  150

seq1  TGAGCCTTGGGAACCTTAACTCATTGGTGATTTCCTAAACAGTATAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTGGGAACCTTAACTCATTGGTGATTTCCTAAACAGTATAGGTT  200

seq1  TTTCTTTGTTATGTTCCATGGGGGAGAGCCCAGACTACTGTAAGTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTATGTTCCATGGGGGAGAGCCCAGACTACTGTAAGTGGGTC  250

seq1  CATCCCTGGGTTGGTGAACTTGGGTGCTATTAAAAAGCAGGCTGAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGGGTTGGTGAACTTGGGTGCTATTAAAAAGCAGGCTGAACAAG  300

seq1  CCATGAAGAACAAACCACTGAGCATCACTCCCCCATGGCCTCTGCATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGAACAAACCACTGAGCATCACTCCCCCATGGCCTCTGCATCAG  350

seq1  CTCTTGTCTCCAAGCTCCTGCACTGAGTTCCTGCCCTGAAATCTCTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTCCAAGCTCCTGCACTGAGTTCCTGCCCTGAAATCTCTGGAT  400

seq1  ACTGAACTACAAAACAAAACTGAAATAAACTGTTGCTTTTCCACTTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTACAAAACAAAACTGAAATAAACTGTTGCTTTTCCACTTTGAT  450

seq1  TTTTGGTCATGGTGTTCATCAGAGTATTAGAAACCCTGACTATGATAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCATGGTGTTCATCAGAGTATTAGAAACCCTGACTATGATAAGT  500

seq1  AGTAAAATCAAATTTAAAGCCTTAAATCTTCCTTTCCAAGTGGTTACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATCAAATTTAAAGCCTTAAATCTTCCTTTCCAAGTGGTTACTCT  550

seq1  AAACATACAGAAATTCACTAAGTTGTATAGTCTTTGGGTCTGATTATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACAGAAATTCACTAAGTTGTATAGTCTTTGGGTCTGATTATTAT  600

seq1  CAGTGTGTGATTTTTTTTATATTTGCAAATTTTTATAGAAAACTTTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTGATTTTTTTTATATTTGCAAATTTTTATAGAAAACTTTATTC  650

seq1  TTAAAAATGAGAGACTATTTCTCCAGCTAAGTGCTTTGGCTTTCATGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGAGAGACTATTTCTCCAGCTAAGTGCTTTGGCTTTCATGGAT  700

seq1  CTTTTTATGGTTCTGATGCATATAAACACATTAAATGCTATGAGATGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATGGTTCTGATGCATATAAACACATTAAATGCTATGAGATGTTA  750

seq1  CCCTTTAAACGATTTCATTTGTTAAAATATGATTTTCTAAAACAATTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAAACGATTTCATTTGTTAAAATATGATTTTCTAAAACAATTAGA  800

seq1  CCTTAAAACCATCTTATACAATGCCTCTAGCTACATAACACCTGTGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAACCATCTTATACAATGCCTCTAGCTACATAACACCTGTGGAAC  850

seq1  ACATTTGGGAACCT-ATTCA-TTTTTCATTTTGCAGAATTTGAAGTAAAG  898
      |||||||||||||| ||||| ||||||||||||||  |||||||||||||
seq2  ACATTTGGGAACCTAATTCATTTTTTCATTTTGCAAGATTTGAAGTAAAG  900

seq1  AAGAAATGTGTTCCCTAAATTGTTTTATATTATATTATATGTTATTATAA  948
      ||||||||||||||||| | ||||||||| |||||  |||||   || ||
seq2  AAGAAATGTGTTCCCTAGA-TGTTTTATA-TATATATTATGT--ATACAA  946

seq1  TATTATGTTATATTCTCTCTTCCTCATCGCTTTCAACATACAAA-TCTTA  997
      ||||||| ||||| ||||| | | ||||||||||| |||||||| |||||
seq2  TATTATG-TATATCCTCTC-TGCACATCGCTTTCACCATACAAATTCTTA  994

seq1  TAT-AGTAATGTACCCACTATATTATATAAGTATTTTCTGAATAAAATGT  1046
      ||| |||||||   ||||| |||| ||  |||||||||||||||||  | 
seq2  TATAAGTAATGGTACCACT-TATT-TAATAGTATTTTCTGAATAAA--GG  1040

seq1  CTTCTTTTTT  1056
      ||||||||||
seq2  CTTCTTTTTT  1050


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