BAC Information

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BAC

Clone NameB6Ng01-328A13
ChromosomeX (Build37)
Map Location 62,495,668 - 62,597,740
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk4, LOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328A13.bB6Ng01-328A13.g
ACCGA115403GA115404
length1,1581,200
definitionB6Ng01-328A13.b B6Ng01-328A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,495,668 - 62,496,836)(62,596,532 - 62,597,740)
sequence
gaattctgtagtgagcgaaatccctaccattaatttagaaaaatattgat
tcaaatatattttctaataaggcaaatgccagaagcttataaaaagaaat
agtaaagaaaggaataaaatctagtagttaaattatattgaaataaagtg
taataaagctcatggtcctaagttctataagaaggcagtctgaaaaagcc
atgggaaacaaaccagtaaatagcatcccttcatgaactctgcctcagct
cctgcctacaagttcctgccctgtgagagttcctgtcctgacttccttta
gtaattgactatgatgtggaagtgtaacttaaataaacccttaattctca
cccctaagatagctttgcatagactcagttaaaaacagaagcaatttact
tttggtctttttaaaacagagtttgataaataaagttattaatttaaaca
tttattcataagaatattcacaacacaaccatttcctttttatttttgtt
tatatttaatatgcattgtattttataatgagaacataattttttatgtt
gcagatagaaaaaaatcatgaaattaatctattaaattgaacaacattcc
attatttaaataatagtatttaacaagtactttcttttttaaaaatattg
atccagcacaccaaacagacctaggttttagaggcaattcccctaggatt
ttttttaagtctgctatattattaaagattttctccctttcatccaaaac
gtattcttttctcatacattttctctataaggagaaatattatttgctca
aaatctaagatcatttgttttacttagtacggatgtatattttcattttg
cctatcaaacaatattacctcttaatatagctacatataaattaatgatt
attctttggagggcagagttacagatgattacttattttctgcacatttc
aaatttctaagataatatcactaacgtgtcaaatatacaaaatttaattc
ttttgaataatggcaggaaaaaacaagtcaaacaataaaatactgcacac
acgccaatacataacaggagctattttgtgctgaagaacaagatcatcat
actcgatatcacaagattttttttaatgtctttttaattggtatttattc
attacatt

gaattccatggattttctgtgactcttactgatattaaatgaaaaatacc
accaacaacatgtagtggctaccagattgaaatgaagctcattggttgtc
tcataatgtatcagtgttttagatttctgtaataatacagtcttaatttg
aatatatattcaatgtaattgtaaaaatattatttctgtaaaaccacaca
aagtaacttggataacaaaaatgctatatagttaaaatgaaaggctagaa
tgttacaaatattatacatatttttcagtcttatttctgtgcaactttgg
aagaaaatggctctccaatctccaataaatggtcaagtcactatagtgac
tagaggaaatctacatgttgccaagatgacaatggctaataattctgatt
ttgattgatttatgagtaacacttaggaagtaaattttagtgcctgtatt
atttaggcttattacatcatgacctaggaaagttgtagcagaaagtattt
attcagcagcttattcttccacattatagttcatcattgatggaaatcag
gacaggaacttaaacaggacatgctcttgatagcaggaacagatgcagag
ggcatggagttgtgctgcttactagcttgatctccatgacctgctcagcc
tacattcttataaaacagaggaccatcaatttctaactaagaaaatgtct
tacagtcagaatatatggaagcatcttctcaattgaatttctctccttta
agataactcatttgtgtatcaagttgacataagactaaccagcaaaatgc
ttttagtataatatatgtattctgaaaactcaacattctatcacaatggc
aggactttgtaatgttaccctaaaaggatattctaacattctttaatttt
aatgttcccttgaaactttatttagtatcagtcaagttccattgttcttt
ttgaaattttctctactaccagctgtgggaccatggaagcagctcctttt
ctggttgagctaggtctaaatcctggagactcagcagtgtttctgcaagg
acagaggatttttgccacactcccagaattaggctctgacatgagccctc
agctctcataagtcctgtgccatcagtaacataggaacatgcctaattcc
cttgactccattccccaagtaatctgccaaggccaggtatgtccctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_62495668_62496836
seq2: B6Ng01-328A13.b_47_1204

seq1  GAATTCTGTAGTGAGCGAAATCCCTACCATTAATTTAGAAAAATATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGTGAGCGAAATCCCTACCATTAATTTAGAAAAATATTGAT  50

seq1  TCAAATATATTTTCTAATAAGGCAAATGCCAGAAGCTTATAAAAAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATATTTTCTAATAAGGCAAATGCCAGAAGCTTATAAAAAGAAAT  100

seq1  AGTAAAGAAAGGAATAAAATCTAGTAGTTAAATTATATTGAAATAAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAAAGGAATAAAATCTAGTAGTTAAATTATATTGAAATAAAGTG  150

seq1  TAATAAAGCTCATGGTCCTAAGTTCTATAAGAAGGCAGTCTGAAAAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGCTCATGGTCCTAAGTTCTATAAGAAGGCAGTCTGAAAAAGCC  200

seq1  ATGGGAAACAAACCAGTAAATAGCATCCCTTCATGAACTCTGCCTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAACAAACCAGTAAATAGCATCCCTTCATGAACTCTGCCTCAGCT  250

seq1  CCTGCCTACAAGTTCCTGCCCTGTGAGAGTTCCTGTCCTGACTTCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTACAAGTTCCTGCCCTGTGAGAGTTCCTGTCCTGACTTCCTTTA  300

seq1  GTAATTGACTATGATGTGGAAGTGTAACTTAAATAAACCCTTAATTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGACTATGATGTGGAAGTGTAACTTAAATAAACCCTTAATTCTCA  350

seq1  CCCCTAAGATAGCTTTGCATAGACTCAGTTAAAAACAGAAGCAATTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAAGATAGCTTTGCATAGACTCAGTTAAAAACAGAAGCAATTTACT  400

seq1  TTTGGTCTTTTTAAAACAGAGTTTGATAAATAAAGTTATTAATTTAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTTTTAAAACAGAGTTTGATAAATAAAGTTATTAATTTAAACA  450

seq1  TTTATTCATAAGAATATTCACAACACAACCATTTCCTTTTTATTTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATAAGAATATTCACAACACAACCATTTCCTTTTTATTTTTGTT  500

seq1  TATATTTAATATGCATTGTATTTTATAATGAGAACATAATTTTTTATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAATATGCATTGTATTTTATAATGAGAACATAATTTTTTATGTT  550

seq1  GCAGATAGAAAAAAATCATGAAATTAATCTATTAAATTGAACAACATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGAAAAAAATCATGAAATTAATCTATTAAATTGAACAACATTCC  600

seq1  ATTATTTAAATAATAGTATTTAACAAGTACTTTCTTTTTTAAAAATATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAATAATAGTATTTAACAAGTACTTTCTTTTTTAAAAATATTG  650

seq1  ATCCAGCACACCAAACAGACCTAGGTTTTAGAGGCAATTCCCCTAGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCACACCAAACAGACCTAGGTTTTAGAGGCAATTCCCCTAGGATT  700

seq1  TTTTTTAAGTCTGCTATATTATTAAAGATTTTCTCCCTTTCATCCAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTCTGCTATATTATTAAAGATTTTCTCCCTTTCATCCAAAAC  750

seq1  GTATTCTTTTCTCATACATTTTCTCTATAAGGAGAAATATTATTTGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTTTTCTCATACATTTTCTCTATAAGGAGAAATATTATTTGCTCA  800

seq1  AAATCTAAGATCATTTGTTTTACTTAGTACGGATGTATATTTTCATTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAGATCATTTGTTTTACTTAGTACGGATGTATATTTTCATTTTG  850

seq1  CCTATCAAACAATATTACCTCTTAATATAGCTACATATAAATTAATGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAAACAATATTACCTCTTAATATAGCTACATATAAATTAATGATT  900

seq1  ATTCTTTGGAGGGCAGAGTTACAGATGATTACTTATTTTCTGCACATTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGGAGGGCAGAGTTACAGATGATTACTTATTTTCTGCACATTTC  950

seq1  AAATTTCTAAGAATAATATCACTAACGTGTCAAATATACAAAATTTAATT  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTAAG-ATAATATCACTAACGTGTCAAATATACAAAATTTAATT  999

seq1  CTTTTGAATAATGGCAGGAAAAAACAAGTCAAACAATAAAATACTGCACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAATAATGGCAGGAAAAAACAAGTCAAACAATAAAATACTGCACA  1049

seq1  CACGCCAATACATAACAGGAGCTATTTTGTGCTGAAG-ACCAGATCCATC  1099
      ||||||||||||||||||||||||||||||||||||| || |||| ||||
seq2  CACGCCAATACATAACAGGAGCTATTTTGTGCTGAAGAACAAGAT-CATC  1098

seq1  ATACTCGATAATCAACCAAAGATTTTTTTTTTATTGTCTTTTTATATTGG  1149
      ||||||||| ||||    ||||  ||||||||| |||||||||| ||| |
seq2  ATACTCGAT-ATCA---CAAGA--TTTTTTTTAATGTCTTTTTA-ATT-G  1140

seq1  GTATTTATTTCATTTACATT  1169
      ||||||| |||| |||||||
seq2  GTATTTA-TTCA-TTACATT  1158


seq1: chrX_62596532_62597740
seq2: B6Ng01-328A13.g_66_1265 (reverse)

seq1  GGGGAGGAACATACCTGGCTTTTGCCAGATAACTGTGGGGATGGAGTCCA  50
      ||||||| |||||||||||  ||| ||||| |||  ||| |||||||| |
seq2  GGGGAGGGACATACCTGGC-CTTGGCAGATTACTTGGGGAATGGAGTCAA  49

seq1  GGGAATTAGGGCATTGTCCTATGTTACTGATGGCCACA-GAATTATGAAG  99
      |||||||| |||||  ||||||||||||||||| |||| || ||||| ||
seq2  GGGAATTA-GGCATGTTCCTATGTTACTGATGG-CACAGGACTTATG-AG  96

seq1  AGCTGAGGCCTCATGTCAAGAGCCTAATGTCTGGGAGTGTGGCAAAAATC  149
      |||||||| |||||||| |||||||||| |||||||||||||||||||||
seq2  AGCTGAGGGCTCATGTC-AGAGCCTAAT-TCTGGGAGTGTGGCAAAAATC  144

seq1  CTTCTGTCCCTTGCAGAAACACCTGCTGAGTCTCCAGGATTTAGACCTAG  199
      | ||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  C-TCTGT-CCTTGCAGAAACA-CTGCTGAGTCTCCAGGATTTAGACCTAG  191

seq1  CTCAACCAGAAAAGGAGCTGCCTTCCATGGTCCCACAGCTGGTAGTAGAG  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCAACCAGAAAAGGAGCTG-CTTCCATGGTCCCACAGCTGGTAGTAGAG  240

seq1  AAAATTTCAAAAAGAACAATGGAACTTGACTGATACTAAATAAAGTTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCAAAAAGAACAATGGAACTTGACTGATACTAAATAAAGTTTCA  290

seq1  AGGGAACATTAAAATTAAAGAATGTTAGAATATCCTTTTAGGGTAACATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACATTAAAATTAAAGAATGTTAGAATATCCTTTTAGGGTAACATT  340

seq1  ACAAAGTCCTGCCATTGTGATAGAATGTTGAGTTTTCAGAATACATATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCCTGCCATTGTGATAGAATGTTGAGTTTTCAGAATACATATAT  390

seq1  TATACTAAAAGCATTTTGCTGGTTAGTCTTATGTCAACTTGATACACAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAAAAGCATTTTGCTGGTTAGTCTTATGTCAACTTGATACACAAA  440

seq1  TGAGTTATCTTAAAGGAGAGAAATTCAATTGAGAAGATGCTTCCATATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATCTTAAAGGAGAGAAATTCAATTGAGAAGATGCTTCCATATAT  490

seq1  TCTGACTGTAAGACATTTTCTTAGTTAGAAATTGATGGTCCTCTGTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGTAAGACATTTTCTTAGTTAGAAATTGATGGTCCTCTGTTTTA  540

seq1  TAAGAATGTAGGCTGAGCAGGTCATGGAGATCAAGCTAGTAAGCAGCACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGTAGGCTGAGCAGGTCATGGAGATCAAGCTAGTAAGCAGCACA  590

seq1  ACTCCATGCCCTCTGCATCTGTTCCTGCTATCAAGAGCATGTCCTGTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGCCCTCTGCATCTGTTCCTGCTATCAAGAGCATGTCCTGTTTA  640

seq1  AGTTCCTGTCCTGATTTCCATCAATGATGAACTATAATGTGGAAGAATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGTCCTGATTTCCATCAATGATGAACTATAATGTGGAAGAATAA  690

seq1  GCTGCTGAATAAATACTTTCTGCTACAACTTTCCTAGGTCATGATGTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAATAAATACTTTCTGCTACAACTTTCCTAGGTCATGATGTAAT  740

seq1  AAGCCTAAATAATACAGGCACTAAAATTTACTTCCTAAGTGTTACTCATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAAATAATACAGGCACTAAAATTTACTTCCTAAGTGTTACTCATA  790

seq1  AATCAATCAAAATCAGAATTATTAGCCATTGTCATCTTGGCAACATGTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCAAAATCAGAATTATTAGCCATTGTCATCTTGGCAACATGTAG  840

seq1  ATTTCCTCTAGTCACTATAGTGACTTGACCATTTATTGGAGATTGGAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCTAGTCACTATAGTGACTTGACCATTTATTGGAGATTGGAGAG  890

seq1  CCATTTTCTTCCAAAGTTGCACAGAAATAAGACTGAAAAATATGTATAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCTTCCAAAGTTGCACAGAAATAAGACTGAAAAATATGTATAAT  940

seq1  ATTTGTAACATTCTAGCCTTTCATTTTAACTATATAGCATTTTTGTTATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAACATTCTAGCCTTTCATTTTAACTATATAGCATTTTTGTTATC  990

seq1  CAAGTTACTTTGTGTGGTTTTACAGAAATAATATTTTTACAATTACATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTACTTTGTGTGGTTTTACAGAAATAATATTTTTACAATTACATTG  1040

seq1  AATATATATTCAAATTAAGACTGTATTATTACAGAAATCTAAAACACTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATTCAAATTAAGACTGTATTATTACAGAAATCTAAAACACTGA  1090

seq1  TACATTATGAGACAACCAATGAGCTTCATTTCAATCTGGTAGCCACTACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATGAGACAACCAATGAGCTTCATTTCAATCTGGTAGCCACTACA  1140

seq1  TGTTGTTGGTGGTATTTTTCATTTAATATCAGTAAGAGTCACAGAAAATC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGGTGGTATTTTTCATTTAATATCAGTAAGAGTCACAGAAAATC  1190

seq1  CATGGAATTC  1209
      ||||||||||
seq2  CATGGAATTC  1200


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