BAC Information

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BAC

Clone NameB6Ng01-329N09
ChromosomeX (Build37)
Map Location 117,480,031 - 117,481,167
singlet/doubletsinglet
Overlap genePcdh11x
Upstream geneLOC385417, Pabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329N09.bB6Ng01-329N09.g
ACCGA116687GA116688
length1,2261,142
definitionB6Ng01-329N09.b B6Ng01-329N09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccccaaacaatagaggccgacactgttttctttggtccctaaaat
tgggaggtaaatttctttgttttttttattagatattttctttatataca
tttcaaatgctatccagaaagttccctatacccaccctctgccctagggt
cccttcagcaaaatctttctgtcatatacaatagtgtctgggcttggtgg
ctgattatgggatggatccctgggtgtggtattctctggatgggccatcc
tttcgtcttagctccaaactttgtctctgtaactcctttcatgggtattt
tgttccctattctaaggaggaatgaagtacccacacgttgatcttcctgc
ttcttgattttcatgtgttttgcaaattgtatcttgggtgttctgtgttt
ctgggctaatatccacttatcagtgagtgcatatctaatgacttcttttg
tgattgggttacctcactaaggatgatatcctccagatacatccatttgt
ccaagaatttctattgctgaagtcactatacactttagacccagggccag
cagcctctaatgtataactgtattgaatgcttccttcttggagactacta
ttcatggtattagaaagtgccatgcaaattttctaaggagagaagcaaag
aagaatcacatccagatatgatgtttttgaatcacaataaaagcaagaat
agaatcataactgtatatgttcaacggtagcatacatattgtggtagcaa
ccaagggctttctaattgaactttaagttcactttaacaagaataaaatc
atgcctggtactagaaaccttgtcaattaaccatgattagtgaaatcatg
gaccccagaggagaaccaacaactggcactattctaaacccagattctgc
ctaactatactgtaaagacttgtccttaacactcacagataaaagggagt
tgttaaacttcatcaatgaaatttatttttgcattagatagagaccatta
cagaaagctataactgatcaaaatgcagagtgtagaccccagatgtaata
aaatacatttataaaataactctgaattcttaagaatctggaaacacttg
tgacagggacaatccttgccatgaattatgtcaaaattagaaaatactga
agaaagggaaacattctttcaatggagaagagatatgttcaattgtttta
tacaacacccacaaatatgttccaag

gaattcaattgacattatgaccaatgaagagtagtgaaagaacacacaca
cacacacacacacaaacacacacacacacacacacataattttgatggtt
ataatttgtagcttttgatccaggggatgtataatatgggaaaattgctc
aactgaccttgttgtttgtatatgatacatatctttttaaacaaattgaa
aaccacagttttcttgagtgaaatcgaatacatgcagatatttggattat
gaactagttctaacaagaaaatacttatttggagtagtgatataaaacag
gacttacaaaaaattgccgataaacatttttagaatatgtctgtacagtg
gtgtatacttttttcatgtactggtaacaatactggaaatatgttaatca
gaatattaggtacatttctttgtttcactgacagcacatttattaacaaa
tacccaactgtttgattttctctttttaaaaataatgtgttgatcatgct
gtaattacaaaaaaatggtagaagtctgaagataagcactaagcataaag
taaatgggcatgtgtgaattgttatagagatatatttaaatatttaacta
cttaaaatgtgaaacttaacacttttagttgtggatcatataacaaaatt
tattctctgaggaaaccctttcttaacaaaactttttgcaatagtaaatg
tccttagtctttgataggcaaaagtgtagcctttaattatgttactggag
tacttgaaaagttataagtgaagccagtgaattatttgtgtgtgtgttgt
ctcatttatatttttagtgttttttttaagaatttcatgtctgtatataa
tgtgtttttttaaaattgtaccacacatttaccttcagatcttcctacat
ccttatcagttcatccaaacttttatgtaacttttttatccatgggatct
gtttagtgctgcatttgaattttaatagtcatatttactaagtgtctccc
acattgtaacaggagatcctaaataaaaaagggtttattcagaaataaga
gtacaggtaaaattaaaatgagataataggaactgaaatcagaacaataa
ggaattattcttcctttttctacttgaatgttccgaatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_117480031_117481167
seq2: B6Ng01-329N09.g_64_1205

seq1  GAATTCAATTGACATTATGACCAATGAAGAGTAGTGAAAGAACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGACATTATGACCAATGAAGAGTAGTGAAAGAACACACACA  50

seq1  CACACACACACACAAACACACACACACACACACACATAATTTTGATGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAAACACACACACACACACACACATAATTTTGATGGTT  100

seq1  ATAATTTGTAGCTTTTGATCCAGGGGATGTATAATATGGGAAAATTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGTAGCTTTTGATCCAGGGGATGTATAATATGGGAAAATTGCTC  150

seq1  AACTGACCTTGTTGTTTGTATATGATACATATCTTTTTAAACAAATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACCTTGTTGTTTGTATATGATACATATCTTTTTAAACAAATTGAA  200

seq1  AACCACAGTTTTCTTGAGTGAAATCGAATACATGCAGATATTTGGATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGTTTTCTTGAGTGAAATCGAATACATGCAGATATTTGGATTAT  250

seq1  GAACTAGTTCTAACAAGAAAATACTTATTTGGAGTAGTGATATAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGTTCTAACAAGAAAATACTTATTTGGAGTAGTGATATAAAACAG  300

seq1  GACTTACAAAAAATTGCCGATAAACATTTTTAGAATATGTCTGTACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACAAAAAATTGCCGATAAACATTTTTAGAATATGTCTGTACAGTG  350

seq1  GTGTATACTTTTTTCATGTACTGGTAACAATACTGGAAATATGTTAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATACTTTTTTCATGTACTGGTAACAATACTGGAAATATGTTAATCA  400

seq1  GAATATTAGGTACATTTCTTTGTTTCACTGACAGCACATTTATTAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAGGTACATTTCTTTGTTTCACTGACAGCACATTTATTAACAAA  450

seq1  TACCCAACTGTTTGATTTTCTCTTTTTAAAAATAATGTGTTGATCATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACTGTTTGATTTTCTCTTTTTAAAAATAATGTGTTGATCATGCT  500

seq1  GTAATTACAAAAAAATGGTAGAAGTCTGAAGATAAGCACTAAGCATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTACAAAAAAATGGTAGAAGTCTGAAGATAAGCACTAAGCATAAAG  550

seq1  TAAATGGGCATGTGTGAATTGTTATAGAGATATATTTAAATATTTAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGCATGTGTGAATTGTTATAGAGATATATTTAAATATTTAACTA  600

seq1  CTTAAAATGTGAAACTTAACACTTTTAGTTGTGGATCATATAACAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGTGAAACTTAACACTTTTAGTTGTGGATCATATAACAAAATT  650

seq1  TATTCTCTGAGGAAACCCTTTCTTAACAAAACTTTTTGCAATAGTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTGAGGAAACCCTTTCTTAACAAAACTTTTTGCAATAGTAAATG  700

seq1  TCCTTAGTCTTTGATAGGCAAAAGTGTAGCCTTTAATTATGTTACTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTCTTTGATAGGCAAAAGTGTAGCCTTTAATTATGTTACTGGAG  750

seq1  TACTTGAAAAGTTATAAGTGAAGCCAGTGAATTATTTGTGTGTGTGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAAAGTTATAAGTGAAGCCAGTGAATTATTTGTGTGTGTGTTGT  800

seq1  CTCATTTATATTTTTAGTGTTTTTTTTAAGAATTTCATGTCTGTATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTATATTTTTAGTGTTTTTTTTAAGAATTTCATGTCTGTATATAA  850

seq1  TGTGTTTTTTTAAAATTGTACCACACATTTACCTTCAGATCTTCCTACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTTTAAAATTGTACCACACATTTACCTTCAGATCTTCCTACAT  900

seq1  CCTTATCAGTTCATCCAAAC-TTTATGTAACTTTTTTATCCATGGAATCT  949
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  CCTTATCAGTTCATCCAAACTTTTATGTAACTTTTTTATCCATGGGATCT  950

seq1  GTTTAGTGCTGCATTTGAATTTTAATAGTCATATTTACTAAGTGTCTCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTGCTGCATTTGAATTTTAATAGTCATATTTACTAAGTGTCTCCC  1000

seq1  ACATTGT-ACAGGAGATCCTAAAT-AAAAAGGGTTTATTCAGGAAATAAG  1047
      ||||||| |||||||||||||||| |||||||||||||||| ||||||||
seq2  ACATTGTAACAGGAGATCCTAAATAAAAAAGGGTTTATTCA-GAAATAAG  1049

seq1  AGTAACAGGTAAAATTAAAATGAGATAATAGAAAACTGAAATCAG-ACAA  1096
      ||| |||||||||||||||||||||||||||  |||||||||||| ||||
seq2  AGT-ACAGGTAAAATTAAAATGAGATAATAG-GAACTGAAATCAGAACAA  1097

seq1  TAAG--ATTATTCTTTCTTTTTCTAC-TGGATGTTCTG-ATGAAA  1137
      ||||  ||||||||| |||||||||| || |||||| | ||||||
seq2  TAAGGAATTATTCTTCCTTTTTCTACTTGAATGTTCCGAATGAAA  1142


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