BAC Information

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BAC

Clone NameB6Ng01-331F21
ChromosomeX (Build37)
Map Location 64,293,681 - 64,440,452
singlet/doubletdoublet
Overlap geneEG666828
Upstream geneSlitrk2, LOC666824, LOC627734
Downstream geneGm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331F21.bB6Ng01-331F21.g
ACCGA117750GA117751
length1,1871,144
definitionB6Ng01-331F21.b B6Ng01-331F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,439,143 - 64,440,452)(64,293,681 - 64,294,831)
sequence
gaattcagcgggatgtatttaaatatttatgcatatattatgtatgtgat
attactcatataatttacatgtttatacaaaacaactaaattatctaaaa
caattaaattgggaagattagaggatttggagtaatgaaagagaagttag
gaaattgtatacttatctttgaatttttaaaaataaaatagactaaatca
cttcatagatgattaaactgaggatcaaagatggaatacctttgccaaaa
gaacaaagcaattaaatattgctagaactggatccctgtttcctgttctc
attctactttgttctatggctttgaaaggcagctgttacacaatgatttt
ataaccgataagatactttcaatcccttttctttctgctacaatgcctcc
agatttggaataaagtaggcatgaaaaatatttgaaaataactaaaaaaa
aaaatctatgtttggtcagaggtatgagtaaagactaaaaggctttcctg
tagtaagtggcaagtctgtaatctagtattgggagggagaaaaagtataa
ttttaagtacaatgaattagaaagcctcatggaatgaccagtggaaaatg
attcaaagttgctcttaaacatggtacttgaacttaagaaagtttcaaga
caaaagcatcagtttgggtacatctatgtttcggtaagaattattttaat
tggagtcaatgagattactgggatggagcatgatatgggccccacaaatt
tcttttaatgataaaccacctcagctagcatattgggacttttacctaag
gtgtctagtccacctaaacaattcaaataatatttattagaaagtcttat
tacctttacactagaaattgttacaatcactactttaaacaaaagcatgc
ctgtgagatgagaaattaacagattgtaatacacatagttggttgttttt
catgtttggttttttacgtttttttcatggctgagctgtgaactgaaatc
aggcagtttggcctacagtagtggtaatcttaaatgctataaggtagttg
tcctaactccaatatcagaataaatgaaagtggcctcaataaatatttgg
ttttctggaaagtttagaacccaactatgaactctctgtgatgcttcaac
ttattctagctataggttaattttatatactactagg

gaattctttcccaaggacatgctgaactttagaaagagacttttgtaagc
atttactatatgccacattccatgttagcactttcagtaatttcaacact
tttatttgaatgaatggggacacatatgagaatataacctttacctgtaa
ggaacgatggcaccaagattttgcaaagagtgttactattaagaacaaac
ataggttgattctgagatgaattttctagaaaagtttttgaagcaaggtt
ttgaatagctgggtacatagaatgaagtaaagcttaaccaaagcatttat
tataggcagtagtcacagaatgaagattagcacaataagaaagttttcat
tacaattataagaaataacaagggatggggatggtgaaatatcttagtac
ttaagcgtaaaagatatttgttctcaacaccaatgttgggcaacacagac
gtgcttatagctccagcttcagggagtctaatgccttctctgtcctctct
aggctcccccattcacatgacaacccccctcacagacatacacaaattta
aaatagaaaaaataagtagtttttcaaaagagatagtgtattggttttgt
gtcaacttcaattcaggtatgaataaacatgagtgctacacagaggtatg
aggataacaagtcagacctgaacatgtgtgctaagaagcatacattatag
tttatggaccaccaagtattacagacataaatttaagcttgtttgtaggg
tgttgacagaagaatatccatgtgattgtttatattagtaaatctaattt
gaaaatatgcaattttcttaaacctatttgcaaaaccatatgcagtatag
acacatttacatacatacattcacattcacacaactatgttgaagcagga
aaacatcttcagatttcaattttctcatctataaaatggacatgacctct
gaagttctccccatcctataattctataattctgtcattttcaaaagagt
atttatttattcagggttggaggaacatgtattatgcaaagtatgtatgg
gggaggtcaaagaaccatttctcaagagttcatttctgttcttattcttg
tgatttgaggcagcctcttgtatcgtgtgcatgcataggcaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_64439143_64440452
seq2: B6Ng01-331F21.b_50_1236 (reverse)

seq1  CCTAGTAGTATAGCACAGTTCTAGTATATGTTATGAAATTAAAATTGCAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTACTATGTTCCTTGGATAGTGATTTCAATGAAATCCCAATCCATTCTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTTAGACCTCAGGTTGTCTTGTAGCCTATGTAATAAAATTAA-CTATA  149
                         || ||||  |||   |||||||||| |||||
seq2  ------------------CCTAGTAG--TAT---ATAAAATTAACCTATA  27

seq1  GGCTAAGATAAAAGGTGAGGAATACAAGAGAG-TCATAAGTTGGTTTCTA  198
       ||||  ||  ||| ||| | ||   |||||| |||| |||||| |||||
seq2  -GCTAGAAT--AAGTTGAAGCATCACAGAGAGTTCAT-AGTTGGGTTCTA  73

seq1  AACTTCCAAGAAAA-CAAATATTTA-TGAGG-CAATTTCATTTTATCTGA  245
      ||||| | |||||| |||||||||| ||||| || ||||||||  |||||
seq2  AACTTTCCAGAAAACCAAATATTTATTGAGGCCACTTTCATTTATTCTGA  123

seq1  TATTGGAAGTAAGGACAACTACCTTATAGCATTTAAGATTACAACTACTG  295
      |||||| ||| ||||||||||||||||||||||||||||||| |||||||
seq2  TATTGG-AGTTAGGACAACTACCTTATAGCATTTAAGATTACCACTACTG  172

seq1  TAGG-CAAACTGCCTGATTTCAGTTCACAGCTCAGCCATGAAAAAAAACG  344
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGGCCAAACTGCCTGATTTCAGTTCACAGCTCAGCCATG-AAAAAAACG  221

seq1  TAAAAAA-CAAACATGAAAAACAAACCAACTATGTGTATTACAATCTGTT  393
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TAAAAAACCAAACATGAAAAAC-AACCAACTATGTGTATTACAATCTGTT  270

seq1  AATTTCTCATCTCACAGGCATGCTTTTGTTTAAAGTAGTGATTGTAACAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCATCTCACAGGCATGCTTTTGTTTAAAGTAGTGATTGTAACAA  320

seq1  TTTCTAGTGTAAAGGTAATAAGACTTTCTAATAAATATTATTTGAATTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTGTAAAGGTAATAAGACTTTCTAATAAATATTATTTGAATTGT  370

seq1  TTAGGTGGACTAGACACCTTAGGTAAAAGTCCCAATATGCTAGCTGAGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGGACTAGACACCTTAGGTAAAAGTCCCAATATGCTAGCTGAGGT  420

seq1  GGTTTATCATTAAAAGAAATTTGTGGGGCCCATATCATGCTCCATCCCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATCATTAAAAGAAATTTGTGGGGCCCATATCATGCTCCATCCCAG  470

seq1  TAATCTCATTGACTCCAATTAAAATAATTCTTACCGAAACATAGATGTAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCATTGACTCCAATTAAAATAATTCTTACCGAAACATAGATGTAC  520

seq1  CCAAACTGATGCTTTTGTCTTGAAACTTTCTTAAGTTCAAGTACCATGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGATGCTTTTGTCTTGAAACTTTCTTAAGTTCAAGTACCATGTT  570

seq1  TAAGAGCAACTTTGAATCATTTTCCACTGGTCATTCCATGAGGCTTTCTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAACTTTGAATCATTTTCCACTGGTCATTCCATGAGGCTTTCTA  620

seq1  ATTCATTGTACTTAAAATTATACTTTTTCTCCCTCCCAATACTAGATTAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGTACTTAAAATTATACTTTTTCTCCCTCCCAATACTAGATTAC  670

seq1  AGACTTGCCACTTACTACAGGAAAGCCTTTTAGTCTTTACTCATACCTCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGCCACTTACTACAGGAAAGCCTTTTAGTCTTTACTCATACCTCT  720

seq1  GACCAAACATAGATTTTTTTTTTTAGTTATTTTCAAATATTTTTCATGCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAACATAGATTTTTTTTTTTAGTTATTTTCAAATATTTTTCATGCC  770

seq1  TACTTTATTCCAAATCTGGAGGCATTGTAGCAGAAAGAAAAGGGATTGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTCCAAATCTGGAGGCATTGTAGCAGAAAGAAAAGGGATTGAA  820

seq1  AGTATCTTATCGGTTATAAAATCATTGTGTAACAGCTGCCTTTCAAAGCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTATCGGTTATAAAATCATTGTGTAACAGCTGCCTTTCAAAGCC  870

seq1  ATAGAACAAAGTAGAATGAGAACAGGAAACAGGGATCCAGTTCTAGCAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACAAAGTAGAATGAGAACAGGAAACAGGGATCCAGTTCTAGCAAT  920

seq1  ATTTAATTGCTTTGTTCTTTTGGCAAAGGTATTCCATCTTTGATCCTCAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTGCTTTGTTCTTTTGGCAAAGGTATTCCATCTTTGATCCTCAG  970

seq1  TTTAATCATCTATGAAGTGATTTAGTCTATTTTATTTTTAAAAATTCAAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCATCTATGAAGTGATTTAGTCTATTTTATTTTTAAAAATTCAAA  1020

seq1  GATAAGTATACAATTTCCTAACTTCTCTTTCATTACTCCAAATCCTCTAA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTATACAATTTCCTAACTTCTCTTTCATTACTCCAAATCCTCTAA  1070

seq1  TCTTCCCAATTTAATTGTTTTAGATAATTTAGTTGTTTTGTATAAACATG  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAATTTAATTGTTTTAGATAATTTAGTTGTTTTGTATAAACATG  1120

seq1  TAAATTATATGAGTAATATCACATACATAATATATGCATAAATATTTAAA  1293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATATGAGTAATATCACATACATAATATATGCATAAATATTTAAA  1170

seq1  TACATCCCGCTGAATTC  1310
      |||||||||||||||||
seq2  TACATCCCGCTGAATTC  1187


seq1: chrX_64293681_64294831
seq2: B6Ng01-331F21.g_70_1213

seq1  GAATTCTTTCCCAAGGACATGCTGAACTTTAGAAAGAGACTTTTGTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCAAGGACATGCTGAACTTTAGAAAGAGACTTTTGTAAGC  50

seq1  ATTTACTATATGCCACATTCCATGTTAGCACTTTCAGTAATTTCAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTATATGCCACATTCCATGTTAGCACTTTCAGTAATTTCAACACT  100

seq1  TTTATTTGAATGAATGGGGACACATATGAGAATATAACCTTTACCTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGAATGAATGGGGACACATATGAGAATATAACCTTTACCTGTAA  150

seq1  GGAACGATGGCACCAAGATTTTGCAAAGAGTGTTACTATTAAGAACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGATGGCACCAAGATTTTGCAAAGAGTGTTACTATTAAGAACAAAC  200

seq1  ATAGGTTGATTCTGAGATGAATTTTCTAGAAAAGTTTTTGAAGCAAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTGATTCTGAGATGAATTTTCTAGAAAAGTTTTTGAAGCAAGGTT  250

seq1  TTGAATAGCTGGGTACATAGAATGAAGTAAAGCTTAACCAAAGCATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAGCTGGGTACATAGAATGAAGTAAAGCTTAACCAAAGCATTTAT  300

seq1  TATAGGCAGTAGTCACAGAATGAAGATTAGCACAATAAGAAAGTTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCAGTAGTCACAGAATGAAGATTAGCACAATAAGAAAGTTTTCAT  350

seq1  TACAATTATAAGAAATAACAAGGGATGGGGATGGTGAAATATCTTAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATAAGAAATAACAAGGGATGGGGATGGTGAAATATCTTAGTAC  400

seq1  TTAAGCGTAAAAGATATTTGTTCTCAACACCAATGTTGGGCAACACAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCGTAAAAGATATTTGTTCTCAACACCAATGTTGGGCAACACAGAC  450

seq1  GTGCTTATAGCTCCAGCTTCAGGGAGTCTAATGCCTTCTCTGTCCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTATAGCTCCAGCTTCAGGGAGTCTAATGCCTTCTCTGTCCTCTCT  500

seq1  AGGCTCCCCCATTCACATGACAACCCCCCTCACAGACATACACAAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCCCCATTCACATGACAACCCCCCTCACAGACATACACAAATTTA  550

seq1  AAATAGAAAAAATAAGTAGTTTTTCAAAAGAGATAGTGTATTGGTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAAAATAAGTAGTTTTTCAAAAGAGATAGTGTATTGGTTTTGT  600

seq1  GTCAACTTCAATTCAGGTATGAATAAACATGAGTGCTACACAGAGGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTTCAATTCAGGTATGAATAAACATGAGTGCTACACAGAGGTATG  650

seq1  AGGATAACAAGTCAGACCTGAACATGTGTGCTAAGAAGCATACATTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAACAAGTCAGACCTGAACATGTGTGCTAAGAAGCATACATTATAG  700

seq1  TTTATGGACCACCAAGTATTACAGACATAAATTTAAGCTTGTTTGTAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGACCACCAAGTATTACAGACATAAATTTAAGCTTGTTTGTAGGG  750

seq1  TGTTGACAGAAGAATATCCATGTGATTGTTTATATTAGTAAATCTAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACAGAAGAATATCCATGTGATTGTTTATATTAGTAAATCTAATTT  800

seq1  GAAAATATGCAA-TTTCTTAAACCTATTTGCAAAACCATATGCAGTATAG  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGCAATTTTCTTAAACCTATTTGCAAAACCATATGCAGTATAG  850

seq1  ACACATTTACATACATACATTCACATTCACACAACTATGTTGAAGCAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTACATACATACATTCACATTCACACAACTATGTTGAAGCAGGA  900

seq1  AAACATCTTCAGATTTCAATTTTCTCATCTATAAAATGGACATGACCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTTCAGATTTCAATTTTCTCATCTATAAAATGGACATGACCTCT  950

seq1  GAAGTTCTCCCCATCCTATAATTCTATAATTCTGTCATTTTCAAAAAGAG  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAGTTCTCCCCATCCTATAATTCTATAATTCTGTCATTTTC-AAAAGAG  999

seq1  TATTTATTTATTCAGGGTTGGAGG-ACATGTA-TATGCCAAAGTATGTAT  1047
      |||||||||||||||||||||||| ||||||| |||| ||||||||||||
seq2  TATTTATTTATTCAGGGTTGGAGGAACATGTATTATG-CAAAGTATGTAT  1048

seq1  -GGGGAGGTCAAAGAACAATTTCTCAGGAG-TCATTTCTGTCCTTATTCT  1095
       |||||||||||||||| |||||||| ||| |||||||||| ||||||| 
seq2  GGGGGAGGTCAAAGAACCATTTCTCAAGAGTTCATTTCTGTTCTTATTC-  1097

seq1  TTGTGTTTTGAGGCAAGGTCTCTTGTTATTTCTGTTGT-TGCATTGCATA  1144
      ||||| |||||||||  | ||||||       | | || |||| ||||||
seq2  TTGTGATTTGAGGCA--GCCTCTTG-------TATCGTGTGCA-TGCATA  1137

seq1  GGCAAGC  1151
      |||||||
seq2  GGCAAGC  1144


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