BAC Information

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BAC

Clone NameB6Ng01-332I20
ChromosomeX (Build37)
Map Location 93,501,644 - 93,645,868
singlet/doubletdoublet
Overlap geneB230358A15Rik
Upstream geneLOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l, Msn, Psmb7-ps1, LOC668221, Vsig4
Downstream geneHeph, Gpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l, Eda2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332I20.bB6Ng01-332I20.g
ACCGA118621GA118622
length1,2051,000
definitionB6Ng01-332I20.b B6Ng01-332I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,501,644 - 93,502,857)(93,645,191 - 93,645,868)
sequence
gaattctcaaaattacacaaaccattttatttaaacaaatacacatttta
aaaatggatactgaaaataatgacctatttcccctttctgttaaatctga
cttcattagtgagcctattgaagaacatgttaaactttgaaaaataaaag
gactaaaaaacaagctaaatttgtagaccctttagcaggtaggataaagc
agtaataaagtgttacagactgggccctttagatgcttgatgttttagta
ttcagcttactaacataagaccttaaacatattctaaagtgcttcttcaa
ctaaacagatactcttagattctatgtgctatggtactcaatgtttagcc
atgtatgaaagttggtgttagaacagttgaaatagtatgaaaactgcttc
aagtttaggtaaaaccatactatttttgaaagataatattctatctaata
actacatatctgtcaaagaatactgatatagctagagattacagtagaaa
tgatagataaatatagttgagaaatggtttactgtgaatttttaaattta
tttttgaataaatcacttgttcttgggtttctgcatgctttttaggaaaa
tgtttgcttgagtttgattcttggagtttttgttgaaggatttatatgag
agtcagtatgttgactttgattgtatatgagatggccattatacagaaaa
aaatcatatcctgctgaaattttaactttcttgaggaagtaaaaatagtg
taagacagaaaataaagtgggaagctatagaataaatgtatcagtaaaat
ctaggagtaacatcgttttcattaactctaaaccttgcttttaaattttg
caataattgtttctttactataaacaaaatctagctacagaaaatttcta
attacttaaaaatgcaataacattaatctctattctagtaacaagtacta
gaacatcattagtttaaaaattaaaactaacttcttattatattaaattt
ggatatattacctatgttttcttgtggtctgaatttatcctagttgccaa
agcttgttctagatgttggggggctattaattttaacatattaattaggt
tacagaaattcaaatggagaatcataatacctagcagcagccattgaata
tctcaatggaaatcatagactcaactacttgtaaccgaagattgaatttc
atatg
gaattcttaaatataggtatccacatatgtacctttttacatgcatgaac
catgtgggggtctaggacagttttattctatatatattctgatcacaata
ctcttaggtttcatgggtatttgcgtattgtgggtagtgtgacctggtac
ctggaagaataacttttactttacccttttcaattagttagattttcaac
cctcataaattaatttcatttttattttctcagaaaacacttggaaaatg
gatatgaagcttttgttttattctctttgtgtcagaaagaaaccttttga
agttaggaagacagcttaatggataaagtatgaagacattagtttggatc
cccagaacaatataaaggctgagtggtagcacacacctgtaatcttagtt
ctgctacaaggagatgaggtcatagccagagataatagaatcttcaggag
ctcacactcagttagcctggcatatgtggcagtggggtagacaacccatc
tcaaacaagatagggacccaacattagaaattcttctctgaccaccacac
aagtactcacattcacacacacaaatattaagagtttcatatgcacaacc
attataatacaaccagctttccatgaaattgaacacaataaaatctcagg
ttatagtctatacagtagaaactgggtttcttttcagctatacttttcaa
atcagtcacttttatgtctatcactcctctggaaaatggttactctttgc
atggaaagaaacctagattgaggcagaacagagcctcacccacaaggttt
taaatctcatttcctgaaatttataaacaattatattacgtggcaaaggt
caattaagatcaaagaagtaattaatcacctagtcacctggttgctaatc
atttggccttaaaatgggcagatgatcctgggttttctgggtgggccaag
tgttagctgactgatccattaatgtagagagaaagcaaaagaaactatca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_93501644_93502857
seq2: B6Ng01-332I20.b_44_1248

seq1  GAATTCTCAAAATTACACAAACCATTTTATTTAAACAAATACACATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAATTACACAAACCATTTTATTTAAACAAATACACATTTTA  50

seq1  AAAATGGATACTGAAAATAATGACCTATTTCCCCTTTCTGTTAAATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATACTGAAAATAATGACCTATTTCCCCTTTCTGTTAAATCTGA  100

seq1  CTTCATTAGTGAGCCTATTGAAGAACATGTTAAACTTTGAAAAATAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTAGTGAGCCTATTGAAGAACATGTTAAACTTTGAAAAATAAAAG  150

seq1  GACTAAAAAACAAGCTAAATTTGTAGACCCTTTAGCAGGTAGGATAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAAAACAAGCTAAATTTGTAGACCCTTTAGCAGGTAGGATAAAGC  200

seq1  AGTAATAAAGTGTTACAGACTGGGCCCTTTAGATGCTTGATGTTTTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAAAGTGTTACAGACTGGGCCCTTTAGATGCTTGATGTTTTAGTA  250

seq1  TTCAGCTTACTAACATAAGACCTTAAACATATTCTAAAGTGCTTCTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTACTAACATAAGACCTTAAACATATTCTAAAGTGCTTCTTCAA  300

seq1  CTAAACAGATACTCTTAGATTCTATGTGCTATGGTACTCAATGTTTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGATACTCTTAGATTCTATGTGCTATGGTACTCAATGTTTAGCC  350

seq1  ATGTATGAAAGTTGGTGTTAGAACAGTTGAAATAGTATGAAAACTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAAAGTTGGTGTTAGAACAGTTGAAATAGTATGAAAACTGCTTC  400

seq1  AAGTTTAGGTAAAACCATACTATTTTTGAAAGATAATATTCTATCTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGGTAAAACCATACTATTTTTGAAAGATAATATTCTATCTAATA  450

seq1  ACTACATATCTGTCAAAGAATACTGATATAGCTAGAGATTACAGTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATATCTGTCAAAGAATACTGATATAGCTAGAGATTACAGTAGAAA  500

seq1  TGATAGATAAATATAGTTGAGAAATGGTTTACTGTGAATTTTTAAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATAAATATAGTTGAGAAATGGTTTACTGTGAATTTTTAAATTTA  550

seq1  TTTTTGAATAAATCACTTGTTCTTGGGTTTCTGCATGCTTTTTAGGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAATAAATCACTTGTTCTTGGGTTTCTGCATGCTTTTTAGGAAAA  600

seq1  TGTTTGCTTGAGTTTGATTCTTGGAGTTTTTGTTGAAGGATTTATATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTTGAGTTTGATTCTTGGAGTTTTTGTTGAAGGATTTATATGAG  650

seq1  AGTCAGTATGTTGACTTTGATTGTATATGAGATGGCCATTATACAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTATGTTGACTTTGATTGTATATGAGATGGCCATTATACAGAAAA  700

seq1  AAATCATATCCTGCTGAAATTTTAACTTTCTTGAGGAAGTAAAAATAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATATCCTGCTGAAATTTTAACTTTCTTGAGGAAGTAAAAATAGTG  750

seq1  TAAGACAGAAAATAAAGTGGGAAGCTATAGAATAAATGTATCAGTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGAAAATAAAGTGGGAAGCTATAGAATAAATGTATCAGTAAAAT  800

seq1  CTAGGAGTAACATCGTTTTCATTAACTCTAAACCTTGCTTTTAAATTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTAACATCGTTTTCATTAACTCTAAACCTTGCTTTTAAATTTTG  850

seq1  CAATAATTGTTTCTTTACTATAAACAAAATCTAGCTACAGAAAATTTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTGTTTCTTTACTATAAACAAAATCTAGCTACAGAAAATTTCTA  900

seq1  ATTACTTAAAAATGCAATAACATTAATCTCTATTCTAGTAACAAAGTACT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTACTTAAAAATGCAATAACATTAATCTCTATTCTAGTAAC-AAGTACT  949

seq1  AGAACATCATTAGTTTAAAAATTAAAAACTAACTTCTTATTATATTAAAA  1000
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  AGAACATCATTAGTTTAAAAATT-AAAACTAACTTCTTATTATATT-AAA  997

seq1  TTTGGATATATTACCTATGTTTTCTTGTGGTCTGAATTTTATCCTAGTTG  1050
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTGGATATATTACCTATGTTTTCTTGTGGTCTGAA-TTTATCCTAGTTG  1046

seq1  CCAAAGCTTG-TCTAGATGTTGGGGGGCTA-TAATTTTAACATATTAATT  1098
      |||||||||| ||||||||||||||||||| ||||||||||||||||| |
seq2  CCAAAGCTTGTTCTAGATGTTGGGGGGCTATTAATTTTAACATATTAA-T  1095

seq1  TAAGTTACAGAAATTTCCAAATGAAGATACATAATA-CTAGCCAGCAGCC  1147
      || ||||||||||||  |||||| |||  ||||||| |||| ||||||||
seq2  TAGGTTACAGAAATT--CAAATGGAGAATCATAATACCTAG-CAGCAGCC  1142

seq1  ATTGAATATCTAAATGAGATTCATTAAGACTCAAAATAAATTGTAACAGA  1197
      ||||||||||| ||||  | ||||  ||||||  ||  | ||||||| ||
seq2  ATTGAATATCTCAATGGAAATCAT--AGACTC--AACTACTTGTAACCGA  1188

seq1  AGATTGATTTCAATATG  1214
      ||||||| ||  |||||
seq2  AGATTGAATTTCATATG  1205

seq1: chrX_93645191_93645868
seq2: B6Ng01-332I20.g_68_745 (reverse)

seq1  AACCCAGTTTCTACTGTATAGACTATAACCTGAGATTTTATTGTGTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTTTCTACTGTATAGACTATAACCTGAGATTTTATTGTGTTCAA  50

seq1  TTTCATGGAAAGCTGGTTGTATTATAATGGTTGTGCATATGAAACTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAAAGCTGGTTGTATTATAATGGTTGTGCATATGAAACTCTTA  100

seq1  ATATTTGTGTGTGTGAATGTGAGTACTTGTGTGGTGGTCAGAGAAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTGTGTGTGAATGTGAGTACTTGTGTGGTGGTCAGAGAAGAATT  150

seq1  TCTAATGTTGGGTCCCTATCTTGTTTGAGATGGGTTGTCTACCCCACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTTGGGTCCCTATCTTGTTTGAGATGGGTTGTCTACCCCACTGC  200

seq1  CACATATGCCAGGCTAACTGAGTGTGAGCTCCTGAAGATTCTATTATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGCCAGGCTAACTGAGTGTGAGCTCCTGAAGATTCTATTATCTC  250

seq1  TGGCTATGACCTCATCTCCTTGTAGCAGAACTAAGATTACAGGTGTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGACCTCATCTCCTTGTAGCAGAACTAAGATTACAGGTGTGTGC  300

seq1  TACCACTCAGCCTTTATATTGTTCTGGGGATCCAAACTAATGTCTTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTCAGCCTTTATATTGTTCTGGGGATCCAAACTAATGTCTTCATA  350

seq1  CTTTATCCATTAAGCTGTCTTCCTAACTTCAAAAGGTTTCTTTCTGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCATTAAGCTGTCTTCCTAACTTCAAAAGGTTTCTTTCTGACAC  400

seq1  AAAGAGAATAAAACAAAAGCTTCATATCCATTTTCCAAGTGTTTTCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAATAAAACAAAAGCTTCATATCCATTTTCCAAGTGTTTTCTGAG  450

seq1  AAAATAAAAATGAAATTAATTTATGAGGGTTGAAAATCTAACTAATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAATGAAATTAATTTATGAGGGTTGAAAATCTAACTAATTGAA  500

seq1  AAGGGTAAAGTAAAAGTTATTCTTCCAGGTACCAGGTCACACTACCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAAAGTAAAAGTTATTCTTCCAGGTACCAGGTCACACTACCCACA  550

seq1  ATACGCAAATACCCATGAAACCTAAGAGTATTGTGATCAGAATATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCAAATACCCATGAAACCTAAGAGTATTGTGATCAGAATATATATA  600

seq1  GAATAAAACTGTCCTAGACCCCCACATGGTTCATGCATGTAAAAAGGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACTGTCCTAGACCCCCACATGGTTCATGCATGTAAAAAGGTAC  650

seq1  ATATGTGGATACCTATATTTAAGAATTC  678
      ||||||||||||||||||||||||||||
seq2  ATATGTGGATACCTATATTTAAGAATTC  678