BAC Information

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BAC

Clone NameB6Ng01-333I01
ChromosomeX (Build37)
Map Location 164,815,431 - 164,816,626
singlet/doubletsinglet
Overlap geneFrmpd4
Upstream genePrps2, EG627311, EG667822
Downstream geneEG637566, Msl31, Arhgap6, Amelx, Hccs, LOC100040950, BC022960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333I01.bB6Ng01-333I01.g
ACCGA119286GA119287
length1,2001,178
definitionB6Ng01-333I01.b B6Ng01-333I01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttactctgaacacttcactcgtgctacactattaaagacattca
aatcaaagggaatgttgagcagttcaatagtacaatagtctactgacaat
tccatggttacttggacatgtgactcatctcctagaaaaactttcccaaa
aagggattagcatttatgggcattattttgatatgactcttgtataacta
gtagtgtttaactcaagttatatggtattatgttattgagataggatctt
gtttcatagtcctggctgtcctggaaatcacaataaccttccgccgtcag
actcatgagtgtcggacttacatacaactgaactttaggtctagtccttg
ttatgttagcccaagctaagcttgaacttgaacatgaggcagtcctgccc
agtatccagtgttggaatactagtaagtgcctttttttttctattgttga
gccctgaaccctaggccctaaatactcaatttctaaatggtatcttaagt
tagaagtttgtaaatttcagaattgctatcataagacagacagaagaaca
aatgtgaggaagtattaagcaaagaaaataagataatgtatgagtaaaga
actctccattaaaaatgtactgaaaatattgatttaaaaccttttaacta
aaggggatttgtacatgcttatctcatcttcattcatgcccactttacct
gttttgttataactcataagaacaaaacaggaggagtcagaggtataaat
agggctcagcaggtaaagatacttgtccccaagcttaaggacctaagttt
gatctgatcactgggacccacatggtagaagagaatggaatatctctgtc
ttctgatttccacatgtacaccatggtgcacatgcatgcacacgcacata
cacacacacacacgtacacacacacatacaccatggatacagatatacaa
ataattttctaacagaaaatatagttaatattgctttataataagatttc
accactaaatttcagaagaagtagaaatagccacagaggttttccttggc
acagcactgtagactgtggtacaacacttctgggattataatggtgactt
atactcttacaccagtctgacattaaaggtttatgagctgcacagcttcc
ctccctcttttgtaaccctcacaatatggagcaggcatgaacacatattt


gaattctctactgtggaatacaaaatggccaagaagcatctacagaaatg
ttcaacatacttagtcataagggaaaagctgacctcagatgctggtgatg
atgtggagaaagaagaacagtcctccattgctagtgggattgcagagtgg
tacaaccactctggaaatcagtctggcagttcctcagaaaattagacata
gtactacctgaggacccagtaataccactgatgggcatatacctaaaaga
tactccaacatgtaacaaggacacttgctccactatgttcatagcagcct
tatttataatagccagaagctgaaaataacccagatgttctacagcagag
gaatggatacagaaaatgtcatacatttacacaatagggtaccactcagt
cattaaaaacaatgacttcatgaaattcttaggcaaagggatggaactag
aaaatatcatcttgaatgaggtaaccaagtcacaaaagaatacacatggt
aatcactgataagtggataattagtccaaaccttggaatacccaagataa
aattcacagactgcgtgaaacaagtttttcaatattatctatatccaaaa
tacatttacatctctgtaagtctgcattcagcaatcttgataccaataac
cagtttgtgtgtgtctatggatgggagcaagagcctgaaatgctttagta
cttagctggtatgttgtgtccggccagtggctcacatgtctgggttctag
tctggaaaggcatcttggaatctggaagagaagagggagctaggcagaca
agagaaagatgtaaccaagacagtcattctgatcaaggttcaattttaat
gtcagcaaacacgctttataaagaagaggggaggcccgcccctagccacc
caaagatcctttgaagtagataggtcagccttctagtggaactctggaac
cgcagtttggtgttaactccagaaaattcttggaagagaaccggttaggc
tcagcagttgggctcaagcaggtagttgcacatcaagagcagcacagcag
gtggctcccgcttaagctgcagaatgttcacagctagctggctaggctga
agagtaacatttcccccgttaataattaaacggacctgtactgagcaaaa
ataaaatttatttataggccccttataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_164815431_164816626
seq2: B6Ng01-333I01.b_48_1247

seq1  GAATTCTTACTCTGAACACTTCACTCGTGCTACACTATTAAAGACATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTCTGAACACTTCACTCGTGCTACACTATTAAAGACATTCA  50

seq1  AATCAAAGGGAATGTTGAGCAGTTCAATAGTACAATAGTCTACTGACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGGGAATGTTGAGCAGTTCAATAGTACAATAGTCTACTGACAAT  100

seq1  TCCATGGTTACTTGGACATGTGACTCATCTCCTAGAAAAACTTTCCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTTACTTGGACATGTGACTCATCTCCTAGAAAAACTTTCCCAAA  150

seq1  AAGGGATTAGCATTTATGGGCATTATTTTGATATGACTCTTGTATAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATTAGCATTTATGGGCATTATTTTGATATGACTCTTGTATAACTA  200

seq1  GTAGTGTTTAACTCAAGTTATATGGTATTATGTTATTGAGATAGGATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTTTAACTCAAGTTATATGGTATTATGTTATTGAGATAGGATCTT  250

seq1  GTTTCATAGTCCTGGCTGTCCTGGAAATCACAATAACCTTCCGCCGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATAGTCCTGGCTGTCCTGGAAATCACAATAACCTTCCGCCGTCAG  300

seq1  ACTCATGAGTGTCGGACTTACATACAACTGAACTTTAGGTCTAGTCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGAGTGTCGGACTTACATACAACTGAACTTTAGGTCTAGTCCTTG  350

seq1  TTATGTTAGCCCAAGCTAAGCTTGAACTTGAACATGAGGCAGTCCTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTAGCCCAAGCTAAGCTTGAACTTGAACATGAGGCAGTCCTGCCC  400

seq1  AGTATCCAGTGTTGGAATACTAGTAAGTGCCTTTTTTTTTCTATTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCAGTGTTGGAATACTAGTAAGTGCCTTTTTTTTTCTATTGTTGA  450

seq1  GCCCTGAACCCTAGGCCCTAAATACTCAATTTCTAAATGGTATCTTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAACCCTAGGCCCTAAATACTCAATTTCTAAATGGTATCTTAAGT  500

seq1  TAGAAGTTTGTAAATTTCAGAATTGCTATCATAAGACAGACAGAAGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTTGTAAATTTCAGAATTGCTATCATAAGACAGACAGAAGAACA  550

seq1  AATGTGAGGAAGTATTAAGCAAAGAAAATAAGATAATGTATGAGTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGGAAGTATTAAGCAAAGAAAATAAGATAATGTATGAGTAAAGA  600

seq1  ACTCTCCATTAAAAATGTACTGAAAATATTGATTTAAAACCTTTTAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCATTAAAAATGTACTGAAAATATTGATTTAAAACCTTTTAACTA  650

seq1  AAGGGGATTTGTACATGCTTATCTCATCTTCATTCATGCCCACTTTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGATTTGTACATGCTTATCTCATCTTCATTCATGCCCACTTTACCT  700

seq1  GTTTTGTTATAACTCATAAGAACAAAACAGGAGGAGTCAGAGGTATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTATAACTCATAAGAACAAAACAGGAGGAGTCAGAGGTATAAAT  750

seq1  AGGGCTCAGCAGGTAAAGATACTTGTCCCCAAGCTTAAGGACCTAAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAGCAGGTAAAGATACTTGTCCCCAAGCTTAAGGACCTAAGTTT  800

seq1  GATCTGATCACTGGGACCCACATGGTAGAAGAGAATGGAATATCTCTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATCACTGGGACCCACATGGTAGAAGAGAATGGAATATCTCTGTC  850

seq1  TTCTGATTTCCACATGTACACCATGGTGCACATGCATGCACACGCACATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTTCCACATGTACACCATGGTGCACATGCATGCACACGCACATA  900

seq1  CACACACACACACGTACACACACACATACACCATGGATACAGATATACAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACACACACACACGTACACACACACATACACCATGGATACAGATATAC-A  949

seq1  AATAATTTTCTAACAGAAAATATAGTTAATATTGCTTTATAATAAGATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTCTAACAGAAAATATAGTTAATATTGCTTTATAATAAGATTT  999

seq1  CA-CACTAAATGTCAG-AGAAGTAG-AATAG-CACAGAGG-TTTCCTTGG  1045
      || |||||||| |||| |||||||| ||||| |||||||| |||||||||
seq2  CACCACTAAATTTCAGAAGAAGTAGAAATAGCCACAGAGGTTTTCCTTGG  1049

seq1  CACAGCACTGTAGACTGT-GTAC-ACAC-TCTGGGATTAATAAT-GTGAC  1091
      |||||||||||||||||| |||| |||| ||||||||| ||||| |||||
seq2  CACAGCACTGTAGACTGTGGTACAACACTTCTGGGATT-ATAATGGTGAC  1098

seq1  TTAATAACTC-TACACCAGTCTGACATTAAGGTTTTAATGAGCTGCACAG  1140
      |||   |||| ||||||||||||||||||| | ||| |||||||||||||
seq2  TTA--TACTCTTACACCAGTCTGACATTAAAGGTTT-ATGAGCTGCACAG  1145

seq1  CTTCCCT-CCTCTTTTGTAA-CCTCACAATAGTGGAGCGAGGCAATGACC  1188
      ||||||| |||||||||||| |||||||||| |||||| |||| |||| |
seq2  CTTCCCTCCCTCTTTTGTAACCCTCACAATA-TGGAGC-AGGC-ATGAAC  1192

seq1  ACATATTT  1196
      ||||||||
seq2  ACATATTT  1200


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