BAC Information

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BAC

Clone NameB6Ng01-334K10
ChromosomeX (Build37)
Map Location 158,773,754 - 158,807,295
singlet/doubletdoublet
Overlap genenone
Upstream genePrkaca-ps1, Rai2, Gm47, Nhs
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334K10.bB6Ng01-334K10.g
ACCGA120105GA120106
length3031,124
definitionB6Ng01-334K10.b B6Ng01-334K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,773,754 - 158,774,056)(158,806,158 - 158,807,295)
sequence
aatataattattgatattcagagggccatttgaagtcagacaaagaaatc
tttaaatattaccacagccaggtaaaatattttaaagggattttccagga
tagaagagagaagatcataaccttagaagacaaaatttctcatcactagc
ccaaagctgaggtcacatttatgtttgtaacaatttcaccttccattatg
tatatacacttagaatggtaggctccattttgtaaattttgtaacataca
cttgggaaaggatgagctgagtatgtggatttgattagagtgggtggggg
tgg

gaattcctcttatcaagatgtgagaccctgaaaggatgctaagtcaatgt
actttctttctttaaaaggttttattttacttaaaattgtgtgtgtgtgt
gtgtgtgcatgtgagtgaaaatatcctaaaatagaggctggaaaatgaag
tcagctctcttggaggtggagttccagatgcttgtgaactgcctgacatg
agtacagggaaccgaactctcatcccctgcaagaagaagagtatgtgctc
ttaaccactgagccatctctgtggctcacagatacttgcacattcatgtt
tattgctacactattcacagtcactaagctatgaagcgatgtaggtagct
aatatccacccccccaaaaaaaacagataaaaaatgtggtgcatatacac
aatggaacttttttcaaccatgaagaacagtgaagttatttgctaaaaaa
tggatgcaattggagaggtcatcatattaagcaggttaaaccagtccctg
aaagataaatatttgtattacatgacttgtggcttctagattttatatag
atacataaaattatatatatatatatatatatatatatatgacatgaaag
taacaggagaacagagtgggtaatgggaaaaggattaaaatgagagtgga
agtacatggggcatatgctcaatgttatacttccatgtctttaaagattt
catacaagtatatttttaaagatgtaggaatggagctggaaatatggctc
aattataaagaacacatattgcagaagatctggcctcaatccttagcctg
tatttccctgattttatttgtacatgcctacttctctccaaggggatgct
tgtggcagagttgtgtataactttgaggctgagatggctagatattaggt
attgaaattcgcatgcttttcctctgcccctactagtagttccatactct
cctggcaatcagaacactcaggatgggagagcttcagttggatacacttg
gtttctgtgtttcttctggaaatttacaaacaggaactttattagaagca
tgatttgggataggagcttagcatgacgacagaaagccaccaaagtaagt
tcggtctgtcaagtagactttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158773754_158774056
seq2: B6Ng01-334K10.b_55_357

seq1  AATATAATTATTGATATTCAGAGGGCCATTTGAAGTCAGACAAAGAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTATTGATATTCAGAGGGCCATTTGAAGTCAGACAAAGAAATC  50

seq1  TTTAAATATTACCACAGCCAGGTAAAATATTTTAAAGGGATTTTCCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATTACCACAGCCAGGTAAAATATTTTAAAGGGATTTTCCAGGA  100

seq1  TAGAAGAGAGAAGATCATAACCTTAGAAGACAAAATTTCTCATCACTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGAGAAGATCATAACCTTAGAAGACAAAATTTCTCATCACTAGC  150

seq1  CCAAAGCTGAGGTCACATTTATGTTTGTAACAATTTCACCTTCCATTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTGAGGTCACATTTATGTTTGTAACAATTTCACCTTCCATTATG  200

seq1  TATATACACTTAGAATGGTAGGCTCCATTTTGTAAATTTTGTAACATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACACTTAGAATGGTAGGCTCCATTTTGTAAATTTTGTAACATACA  250

seq1  CTTGGGAAAGGATGAGCTGAGTATGTGGATTTGATTAGAGTGGGTGGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAAGGATGAGCTGAGTATGTGGATTTGATTAGAGTGGGTGGGGG  300

seq1  TGG  303
      |||
seq2  TGG  303


seq1: chrX_158806158_158807295
seq2: B6Ng01-334K10.g_65_1188 (reverse)

seq1  CATAAAGGTTCTACCTTGACAGGACG-ACCTACTTTGGT-GCTTTCCTTG  48
      |||||||  |||| ||||||||  || || ||||||||| ||||||  ||
seq2  CATAAAG--TCTA-CTTGACAGACCGAACTTACTTTGGTGGCTTTC--TG  45

seq1  TCTGTCATTGCTAAAGCT-CTAT-CCAAATCATTGCTTTCTTAATTAAGT  96
      || |||| |||| ||||| |||| |||||||| |||||   |||| ||| 
seq2  TC-GTCA-TGCT-AAGCTCCTATCCCAAATCA-TGCTT--CTAATAAAG-  88

seq1  TTCCTGTTTTGTAAATTTCCAAGAAGAAACACAGAAACCCAAGTTGTATC  146
      |||||| ||||||||||||| |||||||||||||||| ||||| ||||||
seq2  TTCCTG-TTTGTAAATTTCC-AGAAGAAACACAGAAA-CCAAG-TGTATC  134

seq1  CAACTTGAAGCTCTCCCATCCTGAGTGTTCCTGATTGCCAGGAGAGTATG  196
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAC-TGAAGCTCTCCCATCCTGAGTGTT-CTGATTGCCAGGAGAGTATG  182

seq1  GAACTACTAGTAGGGGCAGAGGAAAAGCATGCGAATTTCAATACCTAATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACTAGTAGGGGCAGAGGAAAAGCATGCGAATTTCAATACCTAATA  232

seq1  TCTAGCCATCTCAGCCTCAAAGTTATACACAACTCTGCCACAAGCATCCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCATCTCAGCCTCAAAGTTATACACAACTCTGCCACAAGCATCCC  282

seq1  CTTGGAGAGAAGTAGGCATGTACAAATAAAATCAGGGAAATACAGGCTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAGAAGTAGGCATGTACAAATAAAATCAGGGAAATACAGGCTAA  332

seq1  GGATTGAGGCCAGATCTTCTGCAATATGTGTTCTTTATAATTGAGCCATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAGGCCAGATCTTCTGCAATATGTGTTCTTTATAATTGAGCCATA  382

seq1  TTTCCAGCTCCATTCCTACATCTTTAAAAATATACTTGTATGAAATCTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTCCATTCCTACATCTTTAAAAATATACTTGTATGAAATCTTT  432

seq1  AAAGACATGGAAGTATAACATTGAGCATATGCCCCATGTACTTCCACTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATGGAAGTATAACATTGAGCATATGCCCCATGTACTTCCACTCT  482

seq1  CATTTTAATCCTTTTCCCATTACCCACTCTGTTCTCCTGTTACTTTCATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATCCTTTTCCCATTACCCACTCTGTTCTCCTGTTACTTTCATG  532

seq1  TCATATATATATATATATATATATATATATAATTTTATGTATCTATATAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATATATATATATATATATATATATAATTTTATGTATCTATATAA  582

seq1  AATCTAGAAGCCACAAGTCATGTAATACAAATATTTATCTTTCAGGGACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAAGCCACAAGTCATGTAATACAAATATTTATCTTTCAGGGACT  632

seq1  GGTTTAACCTGCTTAATATGATGACCTCTCCAATTGCATCCATTTTTTAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAACCTGCTTAATATGATGACCTCTCCAATTGCATCCATTTTTTAG  682

seq1  CAAATAACTTCACTGTTCTTCATGGTTGAAAAAAGTTCCATTGTGTATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACTTCACTGTTCTTCATGGTTGAAAAAAGTTCCATTGTGTATAT  732

seq1  GCACCACATTTTTTATCTGTTTTTTTTGGGGGGGTGGATATTAGCTACCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACATTTTTTATCTGTTTTTTTTGGGGGGGTGGATATTAGCTACCT  782

seq1  ACATCGCTTCATAGCTTAGTGACTGTGAATAGTGTAGCAATAAACATGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGCTTCATAGCTTAGTGACTGTGAATAGTGTAGCAATAAACATGAA  832

seq1  TGTGCAAGTATCTGTGAGCCACAGAGATGGCTCAGTGGTTAAGAGCACAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGTATCTGTGAGCCACAGAGATGGCTCAGTGGTTAAGAGCACAT  882

seq1  ACTCTTCTTCTTGCAGGGGATGAGAGTTCGGTTCCCTGTACTCATGTCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTTCTTGCAGGGGATGAGAGTTCGGTTCCCTGTACTCATGTCAG  932

seq1  GCAGTTCACAAGCATCTGGAACTCCACCTCCAAGAGAGCTGACTTCATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCACAAGCATCTGGAACTCCACCTCCAAGAGAGCTGACTTCATTT  982

seq1  TCCAGCCTCTATTTTAGGATATTTTCACTCACATGCACACACACACACAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTCTATTTTAGGATATTTTCACTCACATGCACACACACACACAC  1032

seq1  ACACAATTTTAAGTAAAATAAAACCTTTTAAAGAAAGAAAGTACATTGAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTTTAAGTAAAATAAAACCTTTTAAAGAAAGAAAGTACATTGAC  1082

seq1  TTAGCATCCTTTCAGGGTCTCACATCTTGATAAGAGGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCCTTTCAGGGTCTCACATCTTGATAAGAGGAATTC  1124


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