MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-335D23
Chromosome	X (Build37)
Map Location	79,200,364 - 79,201,168
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Tmem47, LOC100041462, LOC100041474, 4930595M18Rik, EG667799
Downstream gene	EG629310, Dmd
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tmem47 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192216 MGI:2177570
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100041462 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041462
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	LOC100041474 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041474
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	4930595M18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245492 MGI:3045300
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667799 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667799 MGI:3648640
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 626 ESTs, 21 Proteins pseudo : _no_value

name	EG629310 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629310 MGI:3647741
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Dmd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13405 MGI:94909
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem47 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20270284 GeneID:192216 MGI:2177570
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 47 transcript_id : NM_138751.1

name	Tmem47 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365049 GeneID:192216 MGI:2177570
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 47 transcript_id : NM_175771.3

name	LOC100041462 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271724 GeneID:100041462
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : similar to synaptosomal-associated protein 23 transcript_id : XM_001476422.1

name	4930595M18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382854 GeneID:245492 MGI:3045300
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930595M18 gene transcript_id : NM_173435.2

name	Dmd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357345 GeneID:13405 MGI:94909
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dystrophin, muscular dystrophy transcript_id : NM_007868.2

name	Tmem47 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270285 CCDS:CCDS30254.1 GeneID:192216 MGI:2177570
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : transmembrane 4 superfamily member 10 product : transmembrane protein 47 protein_id : NP_620090.1

name	Tmem47 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28461139 CCDS:CCDS30254.1 GeneID:192216 MGI:2177570
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : transmembrane 4 superfamily member 10 product : transmembrane protein 47 protein_id : NP_786965.1

name	LOC100041462 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271725 GeneID:100041462
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476472.1

name	4930595M18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734114 GeneID:245492 MGI:3045300
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC245492 protein_id : NP_775611.1

name	Dmd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681203 GeneID:13405 MGI:94909
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005626 - insoluble fraction [Evidence IDA]; GO:0005792 - microsome [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0042383 - sarcolemma [Evidence IDA] [Evidence TAS]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007517 - muscle development [Evidence IMP]; GO:0007519 - striated muscle development [Evidence IMP] [Evidence IGI] codon_start : 1 note : Duchenne muscular dystrophy; X-linked muscular dystrophy; dystrophin Dp71 product : dystrophin, muscular dystrophy protein_id : NP_031894.1

name	LOC100041474 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041474
definition	number : 4 pseudo : _no_value

name	LOC100041474 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041474
definition	number : 3 pseudo : _no_value

name	LOC100041474 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041474
definition	number : 2 pseudo : _no_value

name	LOC100041474 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041474
definition	number : 1 pseudo : _no_value

name	EG667799 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667799
definition	number : 1 pseudo : _no_value

name	EG629310 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629310
definition	number : 3 pseudo : _no_value

name	EG629310 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629310
definition	number : 2 pseudo : _no_value

name	EG629310 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629310
definition	number : 1 pseudo : _no_value

clone name	MSMg01-094N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296D08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-529N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337C09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-335D23.b	B6Ng01-335D23.g
ACC	GA120538	GA120539
length	752	1,197
definition	B6Ng01-335D23.b	B6Ng01-335D23.g
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattctatatgggcattctgacttccaaatttaaaaatctctcgagtat gaacaagtctggcagttttctcaattgatgtgtttttttattgacatacc aggcatcccttgtccttaaagacccctgactgatgtcaaagctggggccc tgtagttattgccattgttaaagtcttgttgaggtactcatatttatgtt atcatggcagaaccagagcatacactgagggatggccttatctgacatca atgggaggggaggtccttgatcctgtggaggcttgatgccccagtgtagg gggatgctagagcagtgagccatgaatgtgtgagtgggtagaggagcacc attatagaggcaaaggaggagagagggggcataggatgggattttgtgaa gggataactgggaagggggatatcacttgaaatggaaatgaataaaatga tttttaaaaaggaatgttatttgcacattagcatctttaaaaagaaaaag ataattcataaataaaattaaaaagataattcataataacaaaattagaa atttcttttcaatatgtcatactatattaaagttatcaatttttaggaat atataaagtaaaatctgtgtaatgagattagttcatgtaccagaaattta gtttttaggatataataaaacgtatgtatcctcttctgttaaagtcacag ttttgggtgattttggtgattttctacccagattagccagttatctatat at	gaattcatgcagttgaatccttctcaacagtctgctttacgggaaccttt attaccgtgacccgcagttctggttctggaatgaggaatcttccttgcgc cggtgatggttaactcccgtcccgagtttttcttcccgggtttcctcttc ccggattttctcgtcccggaatttctcgtcccaggtcttctcgtcccgga atttctcgtcccgggtttcagcaccaactcttactaacgcgttctcacgc ccggccaggaaagacgcaacaaaccggaatcttctgcggcaaaagcttta ttgcttacatcttcaggagcaagagcaagagagcaagagacgaagagagg gagtgccagaaccccgtcccttttaaggaaaattatcctccacctaggac gtgttactccctgattggctgcagcccatcggcccagttgtcatcacggg aaaggcagaacacatggcgggaaaactgcccctgcacgtgtgcagattat gtttaccacttagaacacagctgtcagggccatcttataatggcaaatgt gagggcggctcctcacacaagaacaactaatattacctgaaaatatgaga agcacaaaatatagcttccaaaacagccagtttataaagactactaatca cctagacaatcccatatttcaaaaatgttggatatttcaaaatatttcaa aattttagcctaggatcatctgacagaacttaaagaaatggaatattaag gactagcctattctgtctcagcagaactaaactgtcctaacctgaaattg tgtcctttctttgaagaatattatatctgtagacaaaatgaggaaatcct ggaaaggcggctattttaccacaactggagtaactcatagatgctcagtt tcttctttgactccaggactgagaaagctgtcagaccagactagtctcaa cagtaagtgagaaatcgcattatatgtcacattctgtggacttctgacat ttttgaaaacaactatctatgggaaagtaatctgggacagtgttttatta gctatctcagctatttctataaatcttgaaaacaccctacaaataaaact cagagccatgagtggctgttgggcctaactcccagctaaaaccctcagaa taagttataaaactcacacccaatagagagagaaaccatagtggggg
quality values	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chrX_79200364_79201168
seq2: B6Ng01-335D23.b_46_797 (reverse)

seq1  ATATATAGATAGATATATATATAGATAGATAGATAGATAGATAGATAGGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGATATAGATATATATATATAACTGGCT-ATCT-GGTAGAAAATCACC-A  97
                ||||||| |||||||||| |||| |||||||||||||| |
seq2  ----------ATATATAGATAACTGGCTAATCTGGGTAGAAAATCACCAA  40

seq1  AATCACCC-AAACTGTGAC-TTAACAGAAGAGGATACATACATTTTATTA  145
      |||||||| |||||||||| ||||||||||||||||||||| ||||||||
seq2  AATCACCCAAAACTGTGACTTTAACAGAAGAGGATACATACGTTTTATTA  90

seq1  TATCCT-AAAACT-AATTTCTGGTACATGAACTAATCTCATTACACAGAT  193
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  TATCCTAAAAACTAAATTTCTGGTACATGAACTAATCTCATTACACAGAT  140

seq1  TTTACTTTATATATTCCTAAAAATTGATAACTTTAATATAGTATGACATA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTATATATTCCTAAAAATTGATAACTTTAATATAGTATGACATA  190

seq1  TTGAAAAGAAATTTCTAATTTTGTTATTATGAATTATCTTTTTAATTTTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGAAATTTCTAATTTTGTTATTATGAATTATCTTTTTAATTTTA  240

seq1  TTTATGAATTATCTTTTTCTTTTTAAAGATGCTAATGTGCAAATAACATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATTATCTTTTTCTTTTTAAAGATGCTAATGTGCAAATAACATT  290

seq1  CCTTTTTAAAAATCATTTTATTCATTTCCATTTCAAGTGATATCCCCCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTAAAAATCATTTTATTCATTTCCATTTCAAGTGATATCCCCCTT  340

seq1  CCCAGTTATCCCTTCACAAAATCCCATCCTATGCCCCCTCTCTCCTCCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTATCCCTTCACAAAATCCCATCCTATGCCCCCTCTCTCCTCCTT  390

seq1  TGCCTCTATAATGGTGCTCCTCTACCCACTCACACATTCATGGCTCACTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTATAATGGTGCTCCTCTACCCACTCACACATTCATGGCTCACTG  440

seq1  CTCTAGCATCCCCCTACACTGGGGCATCAAGCCTCCACAGGATCAAGGAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCATCCCCCTACACTGGGGCATCAAGCCTCCACAGGATCAAGGAC  490

seq1  CTCCCCTCCCATTGATGTCAGATAAGGCCATCCCTCAGTGTATGCTCTGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCCCATTGATGTCAGATAAGGCCATCCCTCAGTGTATGCTCTGG  540

seq1  TTCTGCCATGATAACATAAATATGAGTACCTCAACAAGACTTTAACAATG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCATGATAACATAAATATGAGTACCTCAACAAGACTTTAACAATG  590

seq1  GCAATAACTACAGGGCCCCAGCTTTGACATCAGTCAGGGGTCTTTAAGGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAACTACAGGGCCCCAGCTTTGACATCAGTCAGGGGTCTTTAAGGA  640

seq1  CAAGGGATGCCTGGTATGTCAATAAAAAAACACATCAATTGAGAAAACTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGATGCCTGGTATGTCAATAAAAAAACACATCAATTGAGAAAACTG  690

seq1  CCAGACTTGTTCATACTCGAGAGATTTTTAAATTTGGAAGTCAGAATGCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTTGTTCATACTCGAGAGATTTTTAAATTTGGAAGTCAGAATGCC  740

seq1  CATATAGAATTC  805
      ||||||||||||
seq2  CATATAGAATTC  752

BAC Information

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BAC

BAC End Information

Alignment Information