BAC Information

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BAC

Clone NameB6Ng01-335H18
ChromosomeX (Build37)
Map Location 157,935,677 - 158,095,855
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr64, Phka2, Ppef1, Rs1, Gja6, Scml2, LOC414364, Prkaca-ps1
Downstream geneRai2, Gm47, Nhs, Reps2, LOC654358, LOC100041557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335H18.bB6Ng01-335H18.g
ACCGA120699GA120700
length1,0541,117
definitionB6Ng01-335H18.b B6Ng01-335H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,094,791 - 158,095,855)(157,935,677 - 157,936,797)
sequence
gaattctctcttctgcctctgcctcccaattactgggattaaaatggtgt
gtatacctagctcaacgcttatgcaatgtcagtcattctcctagtttcaa
cactttcatacctgagctcctagaatgactgatttgactctatttaccct
tgtcatttgcaccacacttctttgactacacaccagattctgtccagtat
gctcccgaaattgttgctatcatcaatactggcttctcttccttcccttt
tactattatggacagtttgccttgaacttcctagtgactacttcagcaag
tgttccatgtggctgttgccgttgatgttgctcttcctggggttgagagt
gcaatttgaaacaatctccaagacccgtttcacccaaggcctctcttctt
gaaaaaacacctcagccttaacaaagattaaagggacaaatcaagctgcc
tttgcttagaatgcttgatttattttcctgtcgtccttgtacttctcatc
aaagagaatgtagaccctgtgcagagtgcaaaatcacataactgagaatg
tccagctctaccagatttagaatatccccaagttatcattgctgcaagat
gtttatctagagacaataatctcagtgcacatttttttaaattgctattt
ttcactttaaacatagcctcaaaattcaaattaggaccaagagagtgttg
ctattagttataagacacctggctttttggatacttaagtagctctcttc
taatcatgactgcagataatgtattttaagactgcactcctgttttcttc
tctaggggttttctttgggagttcacatcaccatctttctctctggaaag
gagataggtgtcaaatttgcagcatatcagcaacaggtttcactttcagg
aagcccaggacaaagtccactgggttgaaatttgtgggagcctcaacata
tgtggtgtgccacagctcttcacactgcattcatgtggcatccaagcaaa
caaatagacagaaataaagagactctactttttttttggagttatagaaa
attt

gaattctgcctatttatagagggcaaaaatatgccactaggaaacacctt
atacagtatcttttataaacgtcctgaaggtgttttggaagacatggacc
tagttgagtggaataataattaggactaggaggggaaaaggccagggaaa
gacagagcccacaaagatacctgggaattcagactccagagaatgggtgc
agatgtctttgtttggtctcactggtttgctgggagccatttcagatggg
ggctcagatggtatggctggatcaagattccttaagcaggcacaggagat
catggtattcaactctgaatccccccttttcctctacttgattcacccgc
acatcccccacaaatacgcaatattttgatcagtaatttgtgacatgtaa
aggcaaagctttttgataaaataaaaaaagaaaagtagtttctatttcaa
agaaacaaatggcttccatgttaatatttgtacaagcagcaaccgttttt
agaagactccactgtcaacaccccagcagctgataatgattcgtggcctc
catgctatgcttttctacagctacacagaagtatttcagcttctttcact
gtctcctaaaatcacagctaataaactctacttggcacctgaagcaaaga
tgctgctgactgtaatatactgggctctgtagcacttcagagacacgaca
gcttctgttattgacctttcaccatgtactatccctaggtgaagactaac
catccatgtgtgccttggggaaatctttcctgaggtcaccatctaaagtg
tctcacatcttttaagtcagctattccatttaacagcccatggacataga
atccatttgtagatgggaaatgacattattctgggattccatttggtgcc
tctgttttctgtgtcctcttttattgatgccatagttgccatttgttcct
taccccagcccctgtccaaaccagcatgtatatccccaagaaagacttgt
gttttaaagttattacagtcagaactaaaattgagatttattgagtgtct
ggctcttgaatactgaaactgctaatttctagctcaggtgtcagatgcca
tagtccacagaagtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158094791_158095855
seq2: B6Ng01-335H18.b_47_1100 (reverse)

seq1  AAATTTTCTATAAATTCCAAAAAAAAGTAGAGTCTCTTTTATTTCTGTCT  50
      ||||||||||||| | | |||||||||||||||||| |||||||||||||
seq2  AAATTTTCTATAACTCCAAAAAAAAAGTAGAGTCTC-TTTATTTCTGTCT  49

seq1  ATTTTGGTTTGCTTTGGATTGCCACATGGAAATGCAGTGTGAAGGAGCTG  100
      ||||  |||||| ||||| |||||||||  ||||||||||||| ||||||
seq2  ATTT--GTTTGC-TTGGA-TGCCACATG--AATGCAGTGTGAA-GAGCTG  92

seq1  TGGCACACCACATATGGTTGAGGCTTCCCACAAATTTCAACCCAGTGGAC  150
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  TGGCACACCACATAT-GTTGAGGC-TCCCACAAATTTCAACCCAGTGGAC  140

seq1  TTTTGTCCTGGGCTTCCTGAAAGTGAAACCTGTTGCTGATATGCTGCAAA  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTGTCCTGGGCTTCCTGAAAGTGAAACCTGTTGCTGATATGCTGCAAA  189

seq1  TTTGACACCTATCTCCTTTCCAGAGAGAAAGATGGTGATGTGAACTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACACCTATCTCCTTTCCAGAGAGAAAGATGGTGATGTGAACTCCCA  239

seq1  AAGAAAACCCCTAGAGAAGAAAACAGGAGTGCAGTCTTAAAATACATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACCCCTAGAGAAGAAAACAGGAGTGCAGTCTTAAAATACATTAT  289

seq1  CTGCAGTCATGATTAGAAGAGAGCTACTTAAGTATCCAAAAAGCCAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCATGATTAGAAGAGAGCTACTTAAGTATCCAAAAAGCCAGGTG  339

seq1  TCTTATAACTAATAGCAACACTCTCTTGGTCCTAATTTGAATTTTGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAACTAATAGCAACACTCTCTTGGTCCTAATTTGAATTTTGAGGC  389

seq1  TATGTTTAAAGTGAAAAATAGCAATTTAAAAAAATGTGCACTGAGATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAAAGTGAAAAATAGCAATTTAAAAAAATGTGCACTGAGATTAT  439

seq1  TGTCTCTAGATAAACATCTTGCAGCAATGATAACTTGGGGATATTCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAGATAAACATCTTGCAGCAATGATAACTTGGGGATATTCTAAA  489

seq1  TCTGGTAGAGCTGGACATTCTCAGTTATGTGATTTTGCACTCTGCACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAGAGCTGGACATTCTCAGTTATGTGATTTTGCACTCTGCACAGG  539

seq1  GTCTACATTCTCTTTGATGAGAAGTACAAGGACGACAGGAAAATAAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATTCTCTTTGATGAGAAGTACAAGGACGACAGGAAAATAAATCA  589

seq1  AGCATTCTAAGCAAAGGCAGCTTGATTTGTCCCTTTAATCTTTGTTAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTAAGCAAAGGCAGCTTGATTTGTCCCTTTAATCTTTGTTAAGG  639

seq1  CTGAGGTGTTTTTTCAAGAAGAGAGGCCTTGGGTGAAACGGGTCTTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTGTTTTTTCAAGAAGAGAGGCCTTGGGTGAAACGGGTCTTGGAG  689

seq1  ATTGTTTCAAATTGCACTCTCAACCCCAGGAAGAGCAACATCAACGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCAAATTGCACTCTCAACCCCAGGAAGAGCAACATCAACGGCAA  739

seq1  CAGCCACATGGAACACTTGCTGAAGTAGTCACTAGGAAGTTCAAGGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATGGAACACTTGCTGAAGTAGTCACTAGGAAGTTCAAGGCAAA  789

seq1  CTGTCCATAATAGTAAAAGGGAAGGAAGAGAAGCCAGTATTGATGATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATAATAGTAAAAGGGAAGGAAGAGAAGCCAGTATTGATGATAGC  839

seq1  AACAATTTCGGGAGCATACTGGACAGAATCTGGTGTGTAGTCAAAGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTCGGGAGCATACTGGACAGAATCTGGTGTGTAGTCAAAGAAGT  889

seq1  GTGGTGCAAATGACAAGGGTAAATAGAGTCAAATCAGTCATTCTAGGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCAAATGACAAGGGTAAATAGAGTCAAATCAGTCATTCTAGGAGC  939

seq1  TCAGGTATGAAAGTGTTGAAACTAGGAGAATGACTGACATTGCATAAGCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATGAAAGTGTTGAAACTAGGAGAATGACTGACATTGCATAAGCG  989

seq1  TTGAGCTAGGTATACACACCATTTTAATCCCAGTAATTGGGAGGCAGAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTAGGTATACACACCATTTTAATCCCAGTAATTGGGAGGCAGAGG  1039

seq1  CAGAAGAGAGAATTC  1065
      |||||||||||||||
seq2  CAGAAGAGAGAATTC  1054


seq1: chrX_157935677_157936797
seq2: B6Ng01-335H18.g_65_1181

seq1  GAATTCTGCCTATTTATAGAGGGCAAAAATATGCCACTAGGAAACACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTATTTATAGAGGGCAAAAATATGCCACTAGGAAACACCTT  50

seq1  ATACAGTATCTTTTATAAACGTCCTGAAGGTGTTTTGGAAGACATGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTATCTTTTATAAACGTCCTGAAGGTGTTTTGGAAGACATGGACC  100

seq1  TAGTTGAGTGGAATAATAATTAGGACTAGGAGGGGAAAAGGCCAGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAGTGGAATAATAATTAGGACTAGGAGGGGAAAAGGCCAGGGAAA  150

seq1  GACAGAGCCCACAAAGATACCTGGGAATTCAGACTCCAGAGAATGGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCCCACAAAGATACCTGGGAATTCAGACTCCAGAGAATGGGTGC  200

seq1  AGATGTCTTTGTTTGGTCTCACTGGTTTGCTGGGAGCCATTTCAGATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTTTGTTTGGTCTCACTGGTTTGCTGGGAGCCATTTCAGATGGG  250

seq1  GGCTCAGATGGTATGGCTGGATCAAGATTCCTTAAGCAGGCACAGGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGATGGTATGGCTGGATCAAGATTCCTTAAGCAGGCACAGGAGAT  300

seq1  CATGGTATTCAACTCTGAATCCCCCCTTTTCCTCTACTTGATTCACCCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATTCAACTCTGAATCCCCCCTTTTCCTCTACTTGATTCACCCGC  350

seq1  ACATCCCCCACAAATACGCAATATTTTGATCAGTAATTTGTGACATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCCCACAAATACGCAATATTTTGATCAGTAATTTGTGACATGTAA  400

seq1  AGGCAAAGCTTTTTGATAAAATAAAAAAAGAAAAGTAGTTTCTATTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGCTTTTTGATAAAATAAAAAAAGAAAAGTAGTTTCTATTTCAA  450

seq1  AGAAACAAATGGCTTCCATGTTAATATTTGTACAAGCAGCAACCGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAATGGCTTCCATGTTAATATTTGTACAAGCAGCAACCGTTTTT  500

seq1  AGAAGACTCCACTGTCAACACCCCAGCAGCTGATAATGATTCGTGGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTCCACTGTCAACACCCCAGCAGCTGATAATGATTCGTGGCCTC  550

seq1  CATGCTATGCTTTTCTACAGCTACACAGAAGTATTTCAGCTTCTTTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTATGCTTTTCTACAGCTACACAGAAGTATTTCAGCTTCTTTCACT  600

seq1  GTCTCCTAAAATCACAGCTAATAAACTCTACTTGGCACCTGAAGCAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTAAAATCACAGCTAATAAACTCTACTTGGCACCTGAAGCAAAGA  650

seq1  TGCTGCTGACTGTAATATACTGGGCTCTGTAGCACTTCAGAGACACGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGACTGTAATATACTGGGCTCTGTAGCACTTCAGAGACACGACA  700

seq1  GCTTCTGTTATTGACCTTTCACCATGTACTATCCCTAGGTGAAGACTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTATTGACCTTTCACCATGTACTATCCCTAGGTGAAGACTAAC  750

seq1  CATCCATGTGTGCCTTGGGGAAATCTTTCCTGAGGTCACCATCTAAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGTGTGCCTTGGGGAAATCTTTCCTGAGGTCACCATCTAAAGTG  800

seq1  TCTCACATCTTTTAAGTCAGCTATTCCATTTAACAGCCCATGGACATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATCTTTTAAGTCAGCTATTCCATTTAACAGCCCATGGACATAGA  850

seq1  ATCCATTTGTAGATGGGAAATGACATTATTCTGGGATTCCATTTGGTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTGTAGATGGGAAATGACATTATTCTGGGATTCCATTTGGTGCC  900

seq1  TCTGTTTTCTGTGTCCTCTTTTATTGATGCCATAGTTGCCATTTGTTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCTGTGTCCTCTTTTATTGATGCCATAGTTGCCATTTGTTCCT  950

seq1  TACCCCAGCCCCTGTCCAAAACCAGCATGTATATCCCCAAGAAAAGACTT  1000
      ||||||||||||||||| ||||||||||||||||||||||| |||||| |
seq2  TACCCCAGCCCCTGTCC-AAACCAGCATGTATATCCCCAAG-AAAGAC-T  997

seq1  TGTGTTTTTAAAGTTTAATTACAGGTCAGAACTAAAATTGAGATTTATTG  1050
      |||| ||||||||||  |||||| ||||||||||||||||||||||||||
seq2  TGTG-TTTTAAAGTT--ATTACA-GTCAGAACTAAAATTGAGATTTATTG  1043

seq1  AGTGTCTGGCTCTTG-ATACTTGAAACTGCTTATTCTTAGCTCAGGTGTC  1099
      ||||||||||||||| |||| |||||||||| |||  |||||||||||||
seq2  AGTGTCTGGCTCTTGAATAC-TGAAACTGCTAATTTCTAGCTCAGGTGTC  1092

seq1  AGATG-CATAGT-CACAG-AGTAAT  1121
      ||||| |||||| ||||| ||||||
seq2  AGATGCCATAGTCCACAGAAGTAAT  1117


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