BAC Information

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BAC

Clone NameB6Ng01-335J14
ChromosomeX (Build37)
Map Location 37,916,179 - 37,917,412
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636756, EG636766, EG245391, LOC100039769
Downstream geneLOC385344, Gria3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335J14.bB6Ng01-335J14.g
ACCGA120775GA120776
length5491,234
definitionB6Ng01-335J14.b B6Ng01-335J14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
atctcatatacaatcaccaaacctagacactattgtgaatgtcaacaagt
ccttgctgacaggagcctggtatagctgtctcctgagaggctctgccagt
gcctgacaaatacagaagtggatgctcacagccatccatgggactgagta
cagggcccccaatgaaggagccagagaaaggacccaaggagttgaagggg
ttttcaatcctataggaagaaaagtaatatgaactaagcagtacccccag
agcacccagggaggaaatcaccaaccaaatagtacacatggagggactca
tggctccagctgcatttgtagcagaggatggcctagttagacatcagtgg
gaggaggccctgggtcctgtgaaggctctatgccccagtgtaagataatg
ccaggaagccagagtgggtaggttagtgagcaggagaagcaggtagggga
taggggaaggagggttttggaggggaaacctgggaaggggatatcatttg
acgtgtaattaagaaaattcttataaataaaaaaatgaagaaaatctct

gaattcttggagtccaaattctaatcaaaataattttggtacacatgcta
caaaacttgtctcttttcactctagatcctgtgtagctgaccatgagtac
taaccataatggattgcaaatatttctttcaagagaaagaagaactaaag
tatcaataaaactgaaaacacattaagaagatataatatagatgctgtat
taaagctaagtgttccataggtatgaataacaaatgttcttcaacttggt
gaataacttcatggccacatttccattacatgctaggattctgtatagtt
tgtgtttgagcaggtcttgtgcatgcttttacaaccactgtgagttcaga
agtacaactccactgctctgtctgaacaaatatggtttccttgtcgtcat
ttctggctcttataatctttgtgactcctcttccaggatagttcctgaat
attgttgtggagggactgtaatgtaaatgccctatttagtgctgaacatt
tcacagagtcttactctttacagcttgaccaattatgggtctctgtatta
atcagcatgtatttgctcaataggtttctctaatgaaggttaagaaatgt
agtaatataggtgcagtaatctcagggtataaaaataaataagaatataa
ggatataatacttacaaacatatatacagaaactagatttccaaaaagta
gggcacaaatgtagcagaatttcagggattaaaaaaaagacatttaattt
tgataatatatgttgactttagtatctgacgttacgtaatggattacaca
attgggcacaaaatcaaaaaaaattaagtacatgaaattttttatgttta
tttttctaagttagcattcaaagtactgagacttattctacacacacaca
cacacacacacacacacacacacacacacacacacattgtcacttttatg
cctggttcccttccagtgaaaacagaataatagtacaaatcaaagaaaga
aatacaggtatttgaattataccccatcataggagaaagagagcatgaga
agagagtaaaagcttatacttatgaacagtattccaaggaacagtatctt
ggatatgaggataataagaaatggtgaaaattctccaaaggtaaagaaat
ttaaataaaacctggaaaataaattcaggttagaaggattgtgtctctaa
ctcaatactggaattccagagccgggaccctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_37916179_37917412
seq2: B6Ng01-335J14.g_67_1300 (reverse)

seq1  AAAAGGGTCCTG---CTTGAATT-CAATA-TGATTTA-TGACACAATCTT  44
      |||||||||| |   || ||||| || || ||| |||  ||||||||| |
seq2  AAAAGGGTCCCGGCTCTGGAATTCCAGTATTGAGTTAGAGACACAATCCT  50

seq1  TCTATAACTGGATATTTATTTTTTCTAGTTTTATTTAAAATCTTTTACCT  94
      |||| | |||   ||||| |||| |  |||||||||||| |  |||||||
seq2  TCTA-ACCTG--AATTTA-TTTTCCAGGTTTTATTTAAATTTCTTTACCT  96

seq1  TTGAGAAATTTTCA-CATTTCTTATTATCCTCAATAATCCAGATACTGTT  143
      |||   |||||||| ||||||||||||||||| |||  | ||||||||||
seq2  TTGGAGAATTTTCACCATTTCTTATTATCCTC-ATATCCAAGATACTGTT  145

seq1  -CTTTGAATACTG-TCATAAGTATAAGCTTTTTACTCTCTCTTCATTGCT  191
       ||| |||||||| |||||||||||||| |||||||||||  ||| ||||
seq2  CCTTGGAATACTGTTCATAAGTATAAGC-TTTTACTCTCTTCTCA-TGCT  193

seq1  CTCTTTTCTCCTATGATTGGGTAT-ATTCAAATACCCTGTATTTCTTTCT  240
      ||| ||||||||||||| |||||| ||||||||| |||||||||||||||
seq2  CTC-TTTCTCCTATGATGGGGTATAATTCAAATA-CCTGTATTTCTTTCT  241

seq1  TTGATTTGTACTATTATTCTGTTTTCACTGGAAGGGAACCAGGCATAAAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGTACTATTATTCTGTTTTCACTGGAAGGGAACCAGGCATAAAA  291

seq1  GTGACAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  341

seq1  GTGTAGAATAAGTCTCAGTACTTTGAATGCTAACTTAGAAAAATAAACAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAATAAGTCTCAGTACTTTGAATGCTAACTTAGAAAAATAAACAT  391

seq1  AAAAAATTTCATGTACTTAATTTTTTTTGATTTTGTGCCCAATTGTGTAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTCATGTACTTAATTTTTTTTGATTTTGTGCCCAATTGTGTAA  441

seq1  TCCATTACGTAACGTCAGATACTAAAGTCAACATATATTATCAAAAATTA  490
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCATTACGTAACGTCAGATACTAAAGTCAACATATATTATC-AAAATTA  490

seq1  AATGTCTTTTTTTTAATCCCTGAAATTCTGCTACATTTGTGCCCTACTTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTTTTTTTAATCCCTGAAATTCTGCTACATTTGTGCCCTACTTT  540

seq1  TTGGAAATCTAGTTTCTGTATATATGTTTGTAAGTATTATATCCTTATAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATCTAGTTTCTGTATATATGTTTGTAAGTATTATATCCTTATAT  590

seq1  TCTTATTTATTTTTATACCCTGAGATTACTGCACCTATATTACTACATTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTATTTTTATACCCTGAGATTACTGCACCTATATTACTACATTT  640

seq1  CTTAACCTTCATTAGAGAAACCTATTGAGCAAATACATGCTGATTAATAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTTCATTAGAGAAACCTATTGAGCAAATACATGCTGATTAATAC  690

seq1  AGAGACCCATAATTGGTCAAGCTGTAAAGAGTAAGACTCTGTGAAATGTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCATAATTGGTCAAGCTGTAAAGAGTAAGACTCTGTGAAATGTT  740

seq1  CAGCACTAAATAGGGCATTTACATTACAGTCCCTCCACAACAATATTCAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTAAATAGGGCATTTACATTACAGTCCCTCCACAACAATATTCAG  790

seq1  GAACTATCCTGGAAGAGGAGTCACAAAGATTATAAGAGCCAGAAATGACG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATCCTGGAAGAGGAGTCACAAAGATTATAAGAGCCAGAAATGACG  840

seq1  ACAAGGAAACCATATTTGTTCAGACAGAGCAGTGGAGTTGTACTTCTGAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAACCATATTTGTTCAGACAGAGCAGTGGAGTTGTACTTCTGAA  890

seq1  CTCACAGTGGTTGTAAAAGCATGCACAAGACCTGCTCAAACACAAACTAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTGGTTGTAAAAGCATGCACAAGACCTGCTCAAACACAAACTAT  940

seq1  ACAGAATCCTAGCATGTAATGGAAATGTGGCCATGAAGTTATTCACCAAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCCTAGCATGTAATGGAAATGTGGCCATGAAGTTATTCACCAAG  990

seq1  TTGAAGAACATTTGTTATTCATACCTATGGAACACTTAGCTTTAATACAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACATTTGTTATTCATACCTATGGAACACTTAGCTTTAATACAG  1040

seq1  CATCTATATTATATCTTCTTAATGTGTTTTCAGTTTTATTGATACTTTAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATATTATATCTTCTTAATGTGTTTTCAGTTTTATTGATACTTTAG  1090

seq1  TTCTTCTTTCTCTTGAAAGAAATATTTGCAATCCATTATGGTTAGTACTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTCTCTTGAAAGAAATATTTGCAATCCATTATGGTTAGTACTC  1140

seq1  ATGGTCAGCTACACAGGATCTAGAGTGAAAAGAGACAAGTTTTGTAGCAT  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAGCTACACAGGATCTAGAGTGAAAAGAGACAAGTTTTGTAGCAT  1190

seq1  GTGTACCAAAATTATTTTGATTAGAATTTGGACTCCAAGAATTC  1234
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCAAAATTATTTTGATTAGAATTTGGACTCCAAGAATTC  1234


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