MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-335M05
Chromosome	X (Build37)
Map Location	100,508,002 - 100,650,508
singlet/doublet	doublet
Overlap gene	LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix
Upstream gene	Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik
Downstream gene	Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
Link	Open Mouse BAC browser

Click to get alignment info.

name	Hdac8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70315 MGI:1917565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phka1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18679 MGI:97576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC668331 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668331
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins pseudo : _no_value

name	LOC100042516 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042516
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG668339 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668339 MGI:3645559
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs

name	Dmrtc1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:632708 MGI:3639121
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668343 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668343 MGI:3648181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 309 ESTs, 6 Proteins pseudo : _no_value

name	LOC100043105 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043105
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	EG668349 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668349 MGI:3648179
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	EG382233 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382233 MGI:3648097
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Dmrtc1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71083 MGI:1918333
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 2 Proteins

name	EG668360 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668360 MGI:3648387
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC668357 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668357
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 2 Proteins

name	1700031F05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73300 MGI:1920550
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	EG668369 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668369 MGI:3648394
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Dmrtc1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70887 MGI:1918137
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	1700011M02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75443 MGI:1922693
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	1700018G05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69388 MGI:1916638
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	EG331480 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:331480 MGI:3649150
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 1 Protein

name	EG668382 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668382 MGI:3644774
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 16 Proteins pseudo : _no_value

name	LOC668387 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668387
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs, 5 Proteins pseudo : _no_value

name	EG245545 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245545 MGI:3645788
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 17 Proteins

name	LOC100042610 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042610
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	EG621205 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621205 MGI:3644890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 108 ESTs, 5 Proteins

name	Nap1l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17954 MGI:106654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668217 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668217
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins pseudo : _no_value

name	4930519F16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75106 MGI:1922356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042615 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042615
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Cdx4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12592 MGI:88362
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC671052 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671052
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Chic1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12212 MGI:1344694
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tsx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22127 MGI:108118
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tsix (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22097 MGI:1336196
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Xist (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213742 MGI:98974
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Rps12-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30964 MGI:1353638
definition	gene_synonym : pS12X note : ribosomal protein S12, pseudogene 1 pseudo : _no_value

name	LOC668406 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668406
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 218 ESTs, 2 Proteins pseudo : _no_value

name	LOC676246 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:676246
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	ENSMUSG00000043661 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621818 MGI:3641899
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668412 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668412
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC668415 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668415
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins pseudo : _no_value

name	B230206F22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78878 MGI:1926128
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Cnbp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75064 MGI:1922314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042640 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042640
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Slc16a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20502 MGI:1203732
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG621381 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621381 MGI:3648722
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 268 ESTs, 11 Proteins

name	EG668426 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668426 MGI:3646866
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 Proteins pseudo : _no_value

name	LOC668430 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668430
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Rnf12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19820 MGI:1342291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C77370 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245555 MGI:2148050
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vcp-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:236937
definition	note : valosin containing protein pseudogene pseudo : _no_value

name	EG621542 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621542 MGI:3648913
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins

name	Hdac8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801693 GeneID:70315 MGI:1917565
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histone deacetylase 8 transcript_id : NM_027382.2

name	Phka1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142355008 GeneID:18679 MGI:97576
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphorylase kinase alpha 1 transcript_id : NM_173021.2

name	Phka1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679300 GeneID:18679 MGI:97576
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphorylase kinase alpha 1 transcript_id : NM_008832.1

name	LOC100042516 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271813 GeneID:100042516
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042516 transcript_id : XM_001478363.1

name	EG668339 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407698 GeneID:668339 MGI:3645559
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs product : predicted gene, EG668339 transcript_id : XM_001001002.1

name	Dmrtc1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84993762 GeneID:632708 MGI:3639121
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DMRT-like family C1b transcript_id : NM_001039116.1

name	LOC100043105 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271839 GeneID:100043105
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : similar to novel member of the doublesex and mab-3 related transcription factor (Dmrt) family transcript_id : XM_001479377.1

name	EG668349 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407703 GeneID:668349 MGI:3648179
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG668349 transcript_id : XM_001001046.1

name	EG382233 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407705 GeneID:382233 MGI:3648097
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : predicted gene, EG382233, transcript variant 1 transcript_id : XM_356344.5

name	Dmrtc1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407710 GeneID:71083 MGI:1918333
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 2 Proteins product : DMRT-like family C1c transcript_id : XM_001001109.1

name	EG668360 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271815 GeneID:668360 MGI:3648387
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG668360 transcript_id : XM_001001097.2

name	LOC668357 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94407706 GeneID:668357
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 2 Proteins product : similar to Dmrtc1c protein transcript_id : XM_135517.4

name	1700031F05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407712 GeneID:73300 MGI:1920550
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700031F05 gene, transcript variant 1 transcript_id : XM_356346.4

name	EG668369 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407713 GeneID:668369 MGI:3648394
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG668369 transcript_id : XM_001001135.1

name	Dmrtc1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801315 GeneID:70887 MGI:1918137
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DMRT-like family C1a transcript_id : NM_027591.2

name	Dmrtc1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84490370 GeneID:70887 MGI:1918137
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DMRT-like family C1a transcript_id : NM_001038616.1

name	Dmrtc1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84490366 GeneID:70887 MGI:1918137
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DMRT-like family C1a transcript_id : NM_029378.1

name	1700011M02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271817 GeneID:75443 MGI:1922693
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA 1700011M02 gene transcript_id : XM_001001147.2

name	1700018G05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407717 GeneID:69388 MGI:1916638
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : RIKEN cDNA 1700018G05 gene transcript_id : XM_920174.2

name	EG245545 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271820 GeneID:245545 MGI:3645788
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 17 Proteins product : predicted gene, EG245545 transcript_id : XM_141989.6

name	EG621205 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407675 GeneID:621205 MGI:3644890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 108 ESTs, 4 Proteins product : predicted gene, EG621205, transcript variant 4 transcript_id : XM_897204.2

name	EG621205 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271844 GeneID:621205 MGI:3644890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 106 ESTs, 2 Proteins product : predicted gene, EG621205 transcript_id : XM_001479423.1

name	Nap1l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679009 GeneID:17954 MGI:106654
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleosome assembly protein 1-like 2 transcript_id : NM_008671.1

name	4930519F16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110626033 GeneID:75106 MGI:1922356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930519F16 gene transcript_id : NM_029170.1

name	Cdx4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802151 GeneID:12592 MGI:88362
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : caudal type homeo box 4 transcript_id : NM_007674.2

name	Chic1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55742748 GeneID:12212 MGI:1344694
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine-rich hydrophobic domain 1 transcript_id : NM_009767.1

name	Tsx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678450 GeneID:22127 MGI:108118
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : testis specific X-linked gene transcript_id : NM_009440.1

name	ENSMUSG00000043661 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865930 GeneID:621818 MGI:3641899
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, ENSMUSG00000043661 transcript_id : NM_001045541.1

name	B230206F22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271848 GeneID:78878 MGI:1926128
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA B230206F22 gene transcript_id : XM_001479486.1

name	Cnbp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385400 GeneID:75064 MGI:1922314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cellular nucleic acid binding protein 2 transcript_id : NM_029158.2

name	Slc16a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112421074 GeneID:20502 MGI:1203732
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 16 (monocarboxylic acid transporters), member 2 transcript_id : NM_009197.2

name	EG621381 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271850 GeneID:621381 MGI:3648722
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 264 ESTs, 11 Proteins product : predicted gene, EG621381 transcript_id : XM_887206.3

name	Rnf12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47078288 GeneID:19820 MGI:1342291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 12 transcript_id : NM_011276.3

name	C77370 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116325978 GeneID:245555 MGI:2148050
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence C77370 transcript_id : NM_001077354.1

name	EG621542 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83003142 GeneID:621542 MGI:3648913
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : predicted gene, EG621542 transcript_id : XM_887355.1

name	Hdac8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037203 GeneID:70315 MGI:1917565
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0000118 - histone deacetylase complex [Evidence TAS]; GO:0005634 - nucleus [Evidence TAS] [Evidence IEA] GO_function : GO:0004407 - histone deacetylase activity [Evidence IEA] [Evidence TAS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence TAS] GO_process : GO:0016568 - chromatin modification [Evidence TAS] [Evidence IEA]; GO:0016575 - histone deacetylation [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : histone deacetylase 8 protein_id : NP_081658.1

name	Phka1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27819665 CCDS:CCDS30324.1 GeneID:18679 MGI:97576
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004689 - phosphorylase kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0005977 - glycogen metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2 product : phosphorylase kinase alpha 1 isoform 2 protein_id : NP_766609.1

name	Phka1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679301 CCDS:CCDS30323.1 GeneID:18679 MGI:97576
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004689 - phosphorylase kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0005977 - glycogen metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1 product : phosphorylase kinase alpha 1 isoform 1 protein_id : NP_032858.1

name	LOC100042516 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271814 GeneID:100042516
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478413.1

name	EG668339 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407699 GeneID:668339 MGI:3645559
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001001002.1

name	Dmrtc1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84993763 CCDS:CCDS30325.1 GeneID:632708 MGI:3639121
definition	codon_start : 1 exception : mismatches in translation note : doublesex and mab-3 related transcription factor 8.2 product : DMRT-like family C1b protein_id : NP_001034205.1

name	LOC100043105 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271840 GeneID:100043105
definition	codon_start : 1 product : similar to novel member of the doublesex and mab-3 related transcription factor (Dmrt) family protein_id : XP_001479427.1

name	EG668349 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407704 GeneID:668349 MGI:3648179
definition	codon_start : 1 product : similar to doublesex and mab-3 related transcription factor 8.2 protein_id : XP_001001046.1

name	EG382233 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63747891 GeneID:382233 MGI:3648097
definition	codon_start : 1 product : similar to novel member of the doublesex and mab-3 related transcription factor (Dmrt) family isoform 1 protein_id : XP_356344.2

name	Dmrtc1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271841 GeneID:71083 MGI:1918333
definition	codon_start : 1 product : DMRT-like family C1c protein_id : XP_001001109.2

name	EG668360 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271816 GeneID:668360 MGI:3648387
definition	codon_start : 1 product : similar to doublesex and mab-3 related transcription factor 8.2 protein_id : XP_001001097.2

name	LOC668357 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271842 GeneID:668357
definition	codon_start : 1 product : similar to Dmrtc1c protein protein_id : XP_135517.4

name	1700031F05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38086482 GeneID:73300 MGI:1920550
definition	codon_start : 1 product : hypothetical protein LOC73300 isoform 1 protein_id : XP_356346.1

name	EG668369 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407714 GeneID:668369 MGI:3648394
definition	codon_start : 1 product : similar to doublesex and mab-3 related transcription factor 8.2 protein_id : XP_001001135.1

name	Dmrtc1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84490371 GeneID:70887 MGI:1918137
definition	GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform c is encoded by transcript variant 3; doublesex and mab-3 related transcription factor 8.1; likely ortologue to human doublesex-and mab-3-related transcription factor C1 (Dmrtc1) product : doublesex and mab-3 related transcription factor 8.1 isoform c protein_id : NP_001033705.1

name	Dmrtc1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21735457 CCDS:CCDS30327.1 GeneID:70887 MGI:1918137
definition	GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; doublesex and mab-3 related transcription factor 8.1; likely ortologue to human doublesex-and mab-3-related transcription factor C1 (Dmrtc1) product : doublesex and mab-3 related transcription factor 8.1 isoform a protein_id : NP_081867.1

name	Dmrtc1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84490367 GeneID:70887 MGI:1918137
definition	GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; doublesex and mab-3 related transcription factor 8.1; likely ortologue to human doublesex-and mab-3-related transcription factor C1 (Dmrtc1) product : doublesex and mab-3 related transcription factor 8.1 isoform b protein_id : NP_083654.1

name	1700011M02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407716 GeneID:75443 MGI:1922693
definition	codon_start : 1 product : hypothetical protein LOC75443 protein_id : XP_001001147.1

name	1700018G05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407718 GeneID:69388 MGI:1916638
definition	codon_start : 1 product : hypothetical protein LOC69388 protein_id : XP_925267.2

name	EG245545 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271821 GeneID:245545 MGI:3645788
definition	codon_start : 1 product : similar to LOC645974 protein protein_id : XP_141989.4

name	EG621205 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407676 GeneID:621205 MGI:3644890
definition	codon_start : 1 product : similar to constitutive photomorphogenic protein isoform 4 protein_id : XP_902297.2

name	EG621205 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271845 GeneID:621205 MGI:3644890
definition	codon_start : 1 product : similar to constitutive photomorphogenic protein protein_id : XP_001479473.1

name	Nap1l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679010 GeneID:17954 MGI:106654
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006334 - nucleosome assembly [Evidence IEA] codon_start : 1 exception : mismatches in translation product : nucleosome assembly protein 1-like 2 protein_id : NP_032697.1

name	4930519F16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626034 GeneID:75106 MGI:1922356
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : alternative splicing B; alternative splicing D; alternative splicing A; novel gene likely coding for a serine proteases, trypsin family/Chymotrypsin serine protease family (S1) containing protein; putative serine protease product : hypothetical protein LOC75106 protein_id : NP_083446.1

name	Cdx4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680914 CCDS:CCDS30328.1 GeneID:12592 MGI:88362
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0001568 - blood vessel development [Evidence IGI]; GO:0007275 - development [Evidence IEA]; GO:0001890 - placenta development [Evidence IGI]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 function : cdx 4 gene encoding DNA binding domain product : caudal type homeo box 4 protein_id : NP_031700.1

name	Chic1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55742749 GeneID:12212 MGI:1344694
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : cystein-rich hydrophobic domain 1; brain X-linked product : cysteine-rich hydrophobic domain 1 protein_id : NP_033897.1

name	Tsx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678451 GeneID:22127 MGI:108118
definition	codon_start : 1 product : testis specific X-linked protein_id : NP_033466.1

name	ENSMUSG00000043661 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865931 GeneID:621818 MGI:3641899
definition	codon_start : 1 note : BMI1-like; polycomb group ring finger 6-like product : hypothetical protein LOC621818 protein_id : NP_001039006.1

name	B230206F22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271849 GeneID:78878 MGI:1926128
definition	codon_start : 1 product : thrombocytosis, familial X-linked protein_id : XP_001479536.1

name	Cnbp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55925630 CCDS:CCDS30329.1 GeneID:75064 MGI:1922314
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron carrier activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006118 - electron transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : cellular nucleic acid binding-like protein product : cellular nucleic acid binding protein 2 protein_id : NP_083434.1

name	Slc16a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112421075 CCDS:CCDS30330.1 GeneID:20502 MGI:1203732
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : X-linked PEST-containing transporter; monocarboxylate transporter 8 product : solute carrier family 16, member 2 protein_id : NP_033223.2

name	EG621381 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271851 GeneID:621381 MGI:3648722
definition	codon_start : 1 product : similar to 16.7 kDa-like protein protein_id : XP_892299.2

name	Rnf12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47078289 CCDS:CCDS30331.1 GeneID:19820 MGI:1342291
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IC] codon_start : 1 note : Hoxa1 regulated product : ring finger protein 12 protein_id : NP_035406.3

name	C77370 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116325979 GeneID:245555 MGI:2148050
definition	GO_function : GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006260 - DNA replication [Evidence IEA] codon_start : 1 product : hypothetical protein LOC245555 protein_id : NP_001070822.1

name	EG621542 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83003143 GeneID:621542 MGI:3648913
definition	codon_start : 1 product : similar to 39S ribosomal protein L30, mitochondrial precursor (L30mt) (MRP-L30) protein_id : XP_892448.1

name	LOC100042610 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042610
definition	number : 1 pseudo : _no_value

name	LOC100042610 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042610
definition	number : 2 pseudo : _no_value

name	LOC100042610 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042610
definition	number : 3 pseudo : _no_value

name	LOC100042610 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042610
definition	number : 4 pseudo : _no_value

name	LOC100042610 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042610
definition	number : 5 pseudo : _no_value

name	LOC100042615 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042615
definition	number : 1 pseudo : _no_value

name	LOC100042615 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042615
definition	number : 2 pseudo : _no_value

name	LOC100042615 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042615
definition	number : 3 pseudo : _no_value

name	LOC100042615 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042615
definition	number : 4 pseudo : _no_value

name	LOC100042615 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042615
definition	number : 5 pseudo : _no_value

name	LOC100042615 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042615
definition	number : 6 pseudo : _no_value

name	LOC671052 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671052
definition	number : 1 pseudo : _no_value

name	LOC671052 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671052
definition	number : 2 pseudo : _no_value

name	LOC671052 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671052
definition	number : 3 pseudo : _no_value

name	LOC676246 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676246
definition	number : 1 pseudo : _no_value

name	LOC676246 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676246
definition	number : 2 pseudo : _no_value

name	LOC668412 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668412
definition	number : 1 pseudo : _no_value

name	LOC668415 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668415
definition	number : 1 pseudo : _no_value

name	LOC668415 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668415
definition	number : 2 pseudo : _no_value

name	LOC100042640 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042640
definition	number : 1 pseudo : _no_value

name	LOC100042640 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042640
definition	number : 2 pseudo : _no_value

name	EG668426 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668426
definition	number : 1 pseudo : _no_value

name	LOC668430 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668430
definition	number : 1 pseudo : _no_value

name	Rps12-ps1 (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	gene_synonym : pS12X note : S19 pseudogene pseudo : _no_value

name	LOC668331 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271812 GeneID:668331
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins product : similar to transcriptional adaptor 3-like pseudo : _no_value transcript_id : XR_033649.1

name	EG668343 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94407700 GeneID:668343 MGI:3648181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 309 ESTs, 6 Proteins product : predicted gene, EG668343 pseudo : _no_value transcript_id : XR_002167.1

name	EG331480 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94407719 GeneID:331480 MGI:3649150
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 1 Protein product : predicted gene, EG331480 transcript_id : XR_002365.1

name	EG668382 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149271819 GeneID:668382 MGI:3644774
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 16 Proteins product : predicted gene, EG668382 pseudo : _no_value transcript_id : XR_033707.1

name	LOC668387 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271843 GeneID:668387
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs, 5 Proteins product : similar to ribosomal protein S6 pseudo : _no_value transcript_id : XR_034189.1

name	LOC668217 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271846 GeneID:668217
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins product : similar to RIKEN cDNA 1700029P11 gene pseudo : _no_value transcript_id : XR_034207.1

name	Tsix (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:84872141 GeneID:22097 MGI:1336196
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : X (inactive)-specific transcript, antisense transcript_id : NR_002844.1

name	Xist (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:37704376 GeneID:213742 MGI:98974
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inactive X specific transcripts transcript_id : NR_001570.1

name	Xist (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:37704378 GeneID:213742 MGI:98974
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inactive X specific transcripts transcript_id : NR_001463.2

name	LOC668406 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271847 GeneID:668406
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 218 ESTs, 2 Proteins product : similar to ribosomal protein S12 pseudo : _no_value transcript_id : XR_034219.1

clone name	MSMg01-545O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161C14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-052A19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-123E10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-052A19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-123E10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-263L07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-529C20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-197I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045F04
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-335M05.b	B6Ng01-335M05.g
ACC	GA120885	GA120886
length	681	1,035
definition	B6Ng01-335M05.b	B6Ng01-335M05.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(100,649,830 - 100,650,508)	(100,508,002 - 100,509,061)
sequence	gaattctgtagacaagggagggctttctaggtttaaaattaatttactgg tccctaaaaaacaaacaaacaaaggggctggagaaatggctcattggtta agaatgctggctgctcttccggaccggaccgtggttgtggttcaattccc agcacccacatggcagctcacaactgtctgtaagtccagttccagggtat ctgacaccctcatacagacttacattcaggcaaaacaccaatgcactaaa taaatacatacatacacaccgaacaacaaaagactacaggtctgaaaaaa gccagtaggcattgcaagcctggaggtggtggaccatggatcagaattca aggctgggctgggctacatgagagcctttaaaagtaagtaaataaacaag gccttattctctattcccactagggaaatgaagcaaactataattggata tccctcgcatctacctacttggaatagctatctagaacctaggaaccagc tggtgttggaggcaagggcctgtaaccgcggcacttgggagatttagagc aagaagatgaagaatttgggtctatcctgggcaatgtcattgagactctg tctcaaaaaaaaaaagaaagaaagaggagagagagagagagagagagaga gatagatatagatagaggaagaagaagagga	gaattctcagttccttctccccccaccgtgtctgcccacatggtcccatg tcatgctccctctcatgatgaagatggacaaaacgtctaaaacttttttc taggcaaaggaagaaagataactttgattttcataaggctccctagtaag tcagagttgaaacataaagacaaatgcaaagagagagctgtacccaagaa accctaggatttggtttgccaaagttccacgaagaagcaagaggccaaga gtgaggagggatgcacagcatggagaaaggagacaaggcacagcctcact aactcagctgctcccaagaatcagccttggaaatggactaactcaaggac ttgttcccaggataaatcgaaacacttacacttttttttttaatgcttaa taagaatgataatcccgccgggtgtggtggcacacgcctttaatcccagc actcgggaggcagaggcaggcggatttctgagttcgaggccagtctggtc tacagagtgagttccaggacagccagagctaaaagagaaaccctgtctcg aaaaaccaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaagaaaaaaaaa aaaaaaagaatgataatccctagctgggcatggtggcgcacatctttaat cccagcaccttagaggcagaggcaggcggatttctgcgttcgaggccaac ctggtctacagagtgagttccaggacagccagggctacacagagaaatcc tgtctcgacccccccccccaaaaaaagaatgataatcccttcctgaggga tactcagtcacaaaggtgcaagtcaaacatggaggtaagtttatgttatg aaggtgaagctccaaatctgtacctaatatgtcatagtgcagtacagtcc ttatttcatgctttgagtgcagcatgtctgcccacaatgcctacataaaa acactttcaatttgcaaataaaagaacgtaagaagagaaactgatctgaa gagggagtgcagcaggctggtggcgcaccccttta
quality values	Open. Hide. 58 26 23 25 58 54 41 31 58 58 54 47 46 26 62 62 62 62 47 47 62 41 62 62 62 62 62 62 62 62 62 62 62 44 49 62 62 62 54 62 62 62 59 62 62 62 62 62 62 49 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 59 59 59 56 54 59 51 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 56 62 59 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 59 59 62 62 62 62 62 62 59 59 59 62 59 62 62 59 62 62 59 59 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 59 59 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 59 59 44 62 59 62 62 62 62 62 59 62 62 62 59 62 62 62 59 62 59 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 54 62 62 62 56 62 62 62 62 62 62 56 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 56 56 56 56 56 56 62 62 62 62 62 62 62 56 62 62 62 62 46 62 62 62 62 62 56 56 56 56 56 56 42 62 62 56 62 62 62 52 62 62 62 62 42 62 62 62 62 52 62 52 62 43 46 62 48 62 47 46 62 62 62 42 41 42 46 52 46 52 62 58 58 47 54 54 54 58 52 54 36 35 39 26 54 51 52 42 54 52 52 39 50 50 54 34 30 54 41 52 54 45 42 54 24 13 52 25 30 41 52 46 52 52 42 54 50 58 54 58 52 58 54 54 52 52 54 52 52 35 33 7 14 52 37 58 54 54 49 58 58 58 54 58 50 35 48 50 50 50 47 41 47 50 50 50 42 49 50 47 50 58 50 50 40 41 12 25 42 14 49 32 50 35 50 27 48 23 17 16 29 15 32 14 32 15 37 14 18 11 15 9 12 7 12 6 14 6 18 9 16 6 12 6 9 5 9 6 9 13 15 6 22 14 10 22 10 10 7 10 15 10	Open. Hide. 62 47 51 42 62 62 62 47 39 56 62 62 62 62 49 62 62 62 62 62 62 62 62 59 59 62 62 46 46 49 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 54 62 62 62 62 59 62 62 59 62 62 62 62 62 59 59 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 54 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 54 58 58 58 58 58 58 58 58 58 45 45 58 58 58 54 58 39 58 54 54 54 58 54 58 58 54 41 58 58 58 58 58 58 52 58 58 54 58 58 54 58 47 58 49 58 58 58 58 58 58 58 58 54 54 54 54 54 58 54 54 58 54 54 58 58 58 54 51 58 58 51 53 54 58 54 53 53 52 58 42 58 58 41 58 58 54 53 58 50 58 58 48 49 58 58 58 58 58 58 58 58 53 52 58 58 58 53 45 58 28 51 51 51 51 58 51 54 58 58 58 58 58 58 58 58 58 58 58 54 43 48 44 43 48 58 58 58 58 42 42 34 30 48 51 42 37 42 40 40 50 58 58 50 44 44 31 31 31 19 28 39 14 12 43 37 33 37 40 50 53 53 58 42 52 39 50 39 58 58 41 31 34 39 58 54 21 58 40 39 39 40 23 32 31 53 39 41 53 41 37 40 38 53 54 42 32 39 40 27 52 45 41 53 40 28 45 51 49 22 40 26 40 40 42 24 25 50 54 24 53 52 33 53 54 42 42 40 33 28 26 24 23 39 16 40 25 46 16 37 24 28 36 34 37 52 31 32 34 35 31 37 32 31 45 32 32 37 32 24 30 37 40 45 32 34 37 34 28 28 34 34 41 29 32 47 46 26 32 24 32 26 32 31 14 33 26 33 34 27 31 31 32 31 52 29 32 35 31 12 31 18 46 51 51 51 51 51 51 46 45 32 25 45 51 51 37 37 30 11 22 31 22 31 31 20 11 34 28 31 51 34 29 37 30 33 33 31 31 26 48 26 25 18 26 30 32 33 31 33 33 43 21 34 19 46 17 15 15 13 31 24 26 20 18 25 35 29 48 26 23 13 23 31 27 31 21 27 24 33 33 26 32 48 32 14 11 34 26 24 16 11 14 16 25 25 9 6 15 22 27 15 35 35 31 29 12 46 21 27 34 22 35 13 25 34 31 26 26 15 16 33 27 24 18 19 31 16 16 13 18 21 8 7 5 9 13 19 19 38 22 37 30 30 31 25 14 48 26 31 31 21 29 14 27 32 30 20 29 17 39 11 17 28 28 32 28 22 22 31 17 18 32 14 48 8 14 9 16 24 20 32 17 31 31 17 20 7 19 10 33 39 33 15 19 26 13 30 37 31 13 17 8 11 48 18 31 22 7 39 10 25 11 34 38 38 7 25 27 5 8 7 9 18 9 30 27 10 20 4 21 34 14 20 24 25 28 13 9 6 14 24 20 9 11 5 6 9 8 4 5 9 21 9 11 27 7 20 16 6 4 5 9 7 18 23 11 8 11 9 7 6 5 9 15 27 11 21

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_100649830_100650508
seq2: B6Ng01-335M05.b_45_725 (reverse)

seq1  TCCTCTTCTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      |||||||||||||||||| ||| | ||| |||||||||||||||||||||
seq2  TCCTCTTCTTCTTCCTCTATCTATATCTATCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTCCTCTTTCTTTCTTTTTTTTTTTGAGACAGAGTCTC-ATGACATTG  99
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCTCCTCTTTCTTTCTTTTTTTTTTTGAGACAGAGTCTCAATGACATTG  100

seq1  CCCAGGATAGACCC-AATTCTTCATCTTCTTGCTCTAAATCTCCCAAGTG  148
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCAGGATAGACCCAAATTCTTCATCTTCTTGCTCTAAATCTCCCAAGTG  150

seq1  CCGCGGTTACAGGCCCTTGCCTCCAACACCAGCTGGTTCCTAGGTTCTAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGTTACAGGCCCTTGCCTCCAACACCAGCTGGTTCCTAGGTTCTAG  200

seq1  ATAGCTATTCCAAGTAGGTAGATGCGAGGGATATCCAATTATAGTTTGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATTCCAAGTAGGTAGATGCGAGGGATATCCAATTATAGTTTGCT  250

seq1  TCATTTCCCTAGTGGGAATAGAGAATAAGGCCTTGTTTATTTACTTACTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCCTAGTGGGAATAGAGAATAAGGCCTTGTTTATTTACTTACTT  300

seq1  TTAAAGGCTCTCATGTAGCCCAGCCCAGCCTTGAATTCTGATCCATGGTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCTCTCATGTAGCCCAGCCCAGCCTTGAATTCTGATCCATGGTC  350

seq1  CACCACCTCCAGGCTTGCAATGCCTACTGGCTTTTTTCAGACCTGTAGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTCCAGGCTTGCAATGCCTACTGGCTTTTTTCAGACCTGTAGTC  400

seq1  TTTTGTTGTTCGGTGTGTATGTATGTATTTATTTAGTGCATTGGTGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTCGGTGTGTATGTATGTATTTATTTAGTGCATTGGTGTTTT  450

seq1  GCCTGAATGTAAGTCTGTATGAGGGTGTCAGATACCCTGGAACTGGACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAATGTAAGTCTGTATGAGGGTGTCAGATACCCTGGAACTGGACTT  500

seq1  ACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCACAACCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCACAACCA  550

seq1  CGGTCCGGTCCGGAAGAGCAGCCAGCATTCTTAACCAATGAGCCATTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCGGTCCGGAAGAGCAGCCAGCATTCTTAACCAATGAGCCATTTCT  600

seq1  CCAGCCCCTTTGTTTGTTTGTTTTTTAGGGACCAGTAAATTAATTTTAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCTTTGTTTGTTTGTTTTTTAGGGACCAGTAAATTAATTTTAAA  650

seq1  CCTAGAAAGCCCTCCCTTGTCTACAGAATTC  679
      |||||||||||||||||||||||||||||||
seq2  CCTAGAAAGCCCTCCCTTGTCTACAGAATTC  681

seq1: chrX_100508002_100509061
seq2: B6Ng01-335M05.g_66_1100

seq1  GAATTCTCAGTTCCTTCTCCCCCCACCGTGTCTGCCCACATGGTCCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTCCTTCTCCCCCCACCGTGTCTGCCCACATGGTCCCATG  50

seq1  TCATGCTCCCTCTCATGATGAAGATGGACAAAACGTCTAAAACTTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCCCTCTCATGATGAAGATGGACAAAACGTCTAAAACTTTTTTC  100

seq1  TAGGCAAAGGAAGAAAGATAACTTTGATTTTCATAAGGCTCCCTAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAAGGAAGAAAGATAACTTTGATTTTCATAAGGCTCCCTAGTAAG  150

seq1  TCAGAGTTGAAACATAAAGACAAATGCAAAGAGAGAGCTGTACCCAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTGAAACATAAAGACAAATGCAAAGAGAGAGCTGTACCCAAGAA  200

seq1  ACCCTAGGATTTGGTTTGCCAAAGTTCCACGAAGAAGCAAGAGGCCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGATTTGGTTTGCCAAAGTTCCACGAAGAAGCAAGAGGCCAAGA  250

seq1  GTGAGGAGGGATGCACAGCATGGAGAAAGGAGACAAGGCACAGCCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGGGATGCACAGCATGGAGAAAGGAGACAAGGCACAGCCTCACT  300

seq1  AACTCAGCTGCTCCCAAGAATCAGCCTTGGAAATGGACTAACTCAAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCTGCTCCCAAGAATCAGCCTTGGAAATGGACTAACTCAAGGAC  350

seq1  TTGTTCCCAGGATAAATCGAAACACTTACACTTTTTTTTTTAATGCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCAGGATAAATCGAAACACTTACACTTTTTTTTTTAATGCTTAA  400

seq1  TAAGAATGATAATCCCGCCGGGTGTGGTGGCACACGCCTTTAATCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGATAATCCCGCCGGGTGTGGTGGCACACGCCTTTAATCCCAGC  450

seq1  ACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGTCTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGTCTGGTC  500

seq1  TACAGAGTGAGTTCCAGGACAGCCAGAGCTAAAAGAGAAACCCTGTCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGAGTTCCAGGACAGCCAGAGCTAAAAGAGAAACCCTGTCTCG  550

seq1  AAAAACCAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGAAAAAAAAA  600

seq1  AAAAAAAGAATGATAATCCCTAGCTGGGCATGGTGGCGCACATCTTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAATGATAATCCCTAGCTGGGCATGGTGGCGCACATCTTTAAT  650

seq1  CCCAGCACCTTAGAGGCAGAGGCAGGCGGATTTCTGCGTTCGAGGCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACCTTAGAGGCAGAGGCAGGCGGATTTCTGCGTTCGAGGCCAAC  700

seq1  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAATCC  750

seq1  TGTCTCGAACCCCCCCCCCCAAAAAAAGAATGATAATCCCTTCCTGAGGG  800
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCG-ACCCCCCCCCCCAAAAAAAGAATGATAATCCCTTCCTGAGGG  799

seq1  ATACTCAGTCACAAAGGTGCAAGTCAAACATGGAGGTAAGTTTATGTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAGTCACAAAGGTGCAAGTCAAACATGGAGGTAAGTTTATGTTAT  849

seq1  GAAGGTGAAGCTCCAAATCTGTACCTAATATGTCAATAGTGCAGGTACAG  900
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  GAAGGTGAAGCTCCAAATCTGTACCTAATATGTC-ATAGTGCA-GTACAG  897

seq1  TCCTTATTTCAATGCTTTGAGTTGCAGCATGTTCTGCCCAACAAATGCCT  950
      |||||||||| |||||||||| ||||||||| ||||||||   |||||||
seq2  TCCTTATTTC-ATGCTTTGAG-TGCAGCATG-TCTGCCCA--CAATGCCT  942

seq1  ACATAAAAACAACTTTTCAAATTTGCAAATTAAAAAAGAAAGTAAAGAAA  1000
      |||||||||| |||||   |||||||||||   ||||||| ||     ||
seq2  ACATAAAAAC-ACTTT--CAATTTGCAAAT---AAAAGAACGT-----AA  981

seq1  GAAGA-AAACTGAATCTGAAAGAAGTGGAGTGCCAGCCAGGCGTGGTGGC  1049
      ||||| |||||| ||||| ||||   |||||| ||| ||||| |||||||
seq2  GAAGAGAAACTG-ATCTG-AAGA--GGGAGTG-CAG-CAGGC-TGGTGGC  1024

seq1  GCACGCCTTTA  1060
      |||| ||||||
seq2  GCACCCCTTTA  1035

BAC Information

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BAC

BAC End Information

Alignment Information