BAC Information

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BAC

Clone NameB6Ng01-336O16
ChromosomeX (Build37)
Map Location 19,692,751 - 19,773,937
singlet/doubletdoublet
Overlap geneSlc9a7
Upstream geneLOC100043953, BC049702, LOC675558, LOC668995, LOC385336, Chst7
Downstream geneLOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336O16.bB6Ng01-336O16.g
ACCGA121697GA121698
length1,1471,182
definitionB6Ng01-336O16.b B6Ng01-336O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,692,751 - 19,693,640)(19,772,754 - 19,773,937)
sequence
gaattctcaactgaggaataccgaatggctgagaagcacctgaaaaaaat
ataaaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcaaaccagtcagaatggctaagatcaaaaattcaggtgacag
tagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaactggacatagtactacctgaagatacagcaataccactcctggg
catatatccagaagatgttccaactggtcataaggatgcatgctccacta
tgttcatagcagccctatttataatagccagaagctggaaggaacccaga
tgtccctcaacagaggaatggatacagaaaatgtgatacatttacacaat
ggagtactactaagcaattaaaaggatgaattcatgaaattcttagacaa
atggatgtatctggaggatatcatcctgagtgaggtaacccaatcacaaa
agaactcacgtgatatgcactcactgataagtggatgctatccctgaaac
ttggaatacccaaagtacaatttgtaaaacacatgaaactcaagcaaagg
aagaccaaagtgtggatacttcgtccctccttagaatggggaacaaaata
ccctggaaggatttacagaaacaaagtttggagctgagacagaagaaagg
accatccagagactgccccacctattctttactatacacaactattcatt
acacttgggtgggtgggggcattattttctgaaaaacttgagacaaggtc
ttacttagtccaggctggccttcagctcctgattctcttgccataggcat
gcaccacacaatttatttttaatttccaagactttttcttttcttcttca
actattttctaataatttgcccttatttcatgactggaagaaaacctttt
atttatttctaaaatttctatgtttggtgtttctttttttttttttctac
taagaacagtcccacacccagaagataacaagctgcctgtaactcatatt
aacctatgctgctgtaactcatgcatctgctcagccacctagtgctg

gaattcctggtctggagccctttgtacctttgtctcctgagttgagtctt
tattcacagggaagagctgagtgtagacagacatgcattgtctgtgtccc
tgtttgggggtgggggaggcagagtggagagcgaaggatactggaaatcg
aacatagaaaggctctctctggcatatatgcctctctgccattctctgta
ggcccctcaaacccagtcagcttcgaatccacactgctgtagcctatttt
gctgcccaagccccattcaggggttggggggcagtaaaattttacctcag
gttagttgagttcaaatcaatacattgggcaccaatttgttgtggtaaat
ctccaaccgaaataagcccgggcaatgaaaacacaactcaattaatatga
atacatgctgtgagcctagattgggcagatctaccgctacactaccatct
tccccatagaagagaccccttagaacttgtggtttctccaggccatgtgc
ttctgttccactttcttcttcctcttcctcttcctcttcctcctcctcct
cctcttcctcctcttcctcctcctcctcctcttccttctcctctaccatt
ctctctctctctctctctctctctctctctctctctccctctccctacca
ccccccatccccacagtagaagagaattaacatcaaatacaattagcccc
aggtctatccacagcatggcaggaaataatcaaactgaaagccaccaaat
agaaacaaaaagaactatacaaagaatcaacaaaatcaggagctggttct
ttgagaaaatcaacaagatagataaacccttagccagactaaccagaggg
cacagagacagtatctaaattaataaaatcagaaatgaaaagggagacat
aatgacaaatatatcttaaaatattattctgtttgttgaatattaaccag
tcaaaatataatatcatgtttacaaacaccatgaacatattataataatt
ttttccccactgtgcttgaattagcattttattaatgttactcaaagagg
ttttgctattttgaatattaaaaatatacctactgataaaataatttcct
ctcctagaaaacacctgataatctttttagtaaactggaatggtcagaac
atgttaacccaatatatatgcgtttttaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_19692751_19693640
seq2: B6Ng01-336O16.b_327_1199

seq1  GAAGATACAGCAATACCACTCCTGGGCATATATCCAGAAGATGTTCCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACAGCAATACCACTCCTGGGCATATATCCAGAAGATGTTCCAAC  50

seq1  TGGTCATAAGGATGCATGCTCCACTATGTTCATAGCAGCCCTATTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATAAGGATGCATGCTCCACTATGTTCATAGCAGCCCTATTTATAA  100

seq1  TAGCCAGAAGCTGGAAGGAACCCAGATGTCCCTCAACAGAGGAATGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGAAGCTGGAAGGAACCCAGATGTCCCTCAACAGAGGAATGGATA  150

seq1  CAGAAAATGTGATACATTTACACAATGGAGTACTACTAAGCAATTAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGTGATACATTTACACAATGGAGTACTACTAAGCAATTAAAAG  200

seq1  GATGAATTCATGAAATTCTTAGACAAATGGATGTATCTGGAGGATATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTCATGAAATTCTTAGACAAATGGATGTATCTGGAGGATATCAT  250

seq1  CCTGAGTGAGGTAACCCAATCACAAAAGAACTCACGTGATATGCACTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGAGGTAACCCAATCACAAAAGAACTCACGTGATATGCACTCAC  300

seq1  TGATAAGTGGATGCTATCCCTGAAACTTGGAATACCCAAAGTACAATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTGGATGCTATCCCTGAAACTTGGAATACCCAAAGTACAATTTG  350

seq1  TAAAACACATGAAACTCAAGCAAAGGAAGACCAAAGTGTGGATACTTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACATGAAACTCAAGCAAAGGAAGACCAAAGTGTGGATACTTCGT  400

seq1  CCCTCCTTAGAATGGGGAACAAAATACCCTGGAAGGATTTACAGAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTAGAATGGGGAACAAAATACCCTGGAAGGATTTACAGAAACAA  450

seq1  AGTTTGGAGCTGAGACAGAAGAAAGGACCATCCAGAGACTGCCCCACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGCTGAGACAGAAGAAAGGACCATCCAGAGACTGCCCCACCTA  500

seq1  TTCTTTACTATACACAACTATTCATTACACTTGGGTGGGTGGGGGCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACTATACACAACTATTCATTACACTTGGGTGGGTGGGGGCATTA  550

seq1  TTTTCTGAAAAACTTGAGACAAGGTCTTACTTAGTCCAGGCTGGCCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAAAAACTTGAGACAAGGTCTTACTTAGTCCAGGCTGGCCTTCA  600

seq1  GCTCCTGATTCTCTTGCCATAGGCATGCACCACACAATTTATTTTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGATTCTCTTGCCATAGGCATGCACCACACAATTTATTTTTAATT  650

seq1  TCCAAGACTTTTTCTTTTCTTCTTCAACTATTTTCTAATAATTTGCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACTTTTTCTTTTCTTCTTCAACTATTTTCTAATAATTTGCCCTT  700

seq1  ATTTCATGACTGGAAGAAAAACCTTTTATTTATTTCTAAAATTTCTATGT  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTCATGACTGGAAG-AAAACCTTTTATTTATTTCTAAAATTTCTATGT  749

seq1  TTTGGGTGTTTCTTTTTTTTTTTTTTTCTACTAAGACAAGGTCCCACACC  800
      ||  ||||||||  |||||||||||||||||||||| |  ||||||||||
seq2  TT--GGTGTTTC--TTTTTTTTTTTTTCTACTAAGA-ACAGTCCCACACC  794

seq1  CAGAAGATAACAAGCTGCCCTGTAACTCATTATTTAACCTATGCTGGCCT  850
      ||||||||||||||||| ||||||||||||   |||||||||||||  ||
seq2  CAGAAGATAACAAGCTG-CCTGTAACTCAT--ATTAACCTATGCTG--CT  839

seq1  GTAACTCATGGCAATTCTGCCTCAGCCACCCTAAGTGCTG  890
      ||||||||| |||  |||| ||||||||||   |||||||
seq2  GTAACTCAT-GCA--TCTG-CTCAGCCACC--TAGTGCTG  873


seq1: chrX_19772754_19773937
seq2: B6Ng01-336O16.g_68_1249 (reverse)

seq1  TATTT-AAAACGCATTATATAT---GTGTACATTGTCTAACAAT--CAGT  44
      ||||| |||||||| |||||||   ||  ||||  ||| || ||  ||||
seq2  TATTTAAAAACGCA-TATATATTGGGTTAACATGTTCTGACCATTCCAGT  49

seq1  TTACTTAAAAAAGATTATCA-GTG-TTTCTAGGAGA-GAAATTATTTTAT  91
      |||||  ||||||||||||| ||| ||||||||||| |||||||||||||
seq2  TTACT--AAAAAGATTATCAGGTGTTTTCTAGGAGAGGAAATTATTTTAT  97

seq1  CAGTAAGTATATTTTAAATATTTCAAAATAGCAAAAACTCTTTGAAGTAA  141
      ||||| ||||||||| |||| ||||||||||||||| ||||||| |||  
seq2  CAGTAGGTATATTTTTAATA-TTCAAAATAGCAAAACCTCTTTG-AGT--  143

seq1  AACATTAATAAAATGCTAATTTCAAGCACAGTGAG--AAAAATTATTAAT  189
      ||||||||||||||||||| ||||||||||||| |  |||||||||| ||
seq2  AACATTAATAAAATGCTAA-TTCAAGCACAGTGGGGAAAAAATTATT-AT  191

seq1  AATATGTTCATGGTGTTTGTAAAACATGATTATAATATTTTGAACTGTTA  239
      |||||||||||||||||||| |||||||| ||| |||||||||   ||||
seq2  AATATGTTCATGGTGTTTGT-AAACATGA-TATTATATTTTGACTGGTTA  239

seq1  ATATTCAACAAACAGAATAATTATTTTAAGATATATTTTGTCATTATGTC  289
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  ATATTCAACAAACAGAATAA-TATTTTAAGATATA-TTTGTCATTATGTC  287

seq1  TCCCTTTTCATTTCTGATTTTATTAATTTAGATACTGTCTCTGTGCCCTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTCATTTCTGATTTTATTAATTTAGATACTGTCTCTGTGCCCTC  337

seq1  TGGTTAGTCTGGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAAC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGTCTGGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAAC  387

seq1  CAGCTCCTGATTTTGTTGATTCTTTGTATAGTTCTTTTTGTTTCTATTTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGATTTTGTTGATTCTTTGTATAGTTCTTTTTGTTTCTATTTG  437

seq1  GTGGCTTTCAGTTTGATTATTTCCTGCCATGCTGTGGATAGACCTGGGGC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTCAGTTTGATTATTTCCTGCCATGCTGTGGATAGACCTGGGGC  487

seq1  TAATTGTATTTGATGTTAATTCTCTTCTACTGTGGGGATGGGGGGTGGTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTATTTGATGTTAATTCTCTTCTACTGTGGGGATGGGGGGTGGTA  537

seq1  GGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGG  587

seq1  TAGAGGAGAAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGAAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAG  637

seq1  GAGGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAAGTGGAACAGAAGCACA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAAGTGGAACAGAAGCACA  687

seq1  TGGCCTGGAGAAACCACAAGTTCTAAGGGGTCTCTTCTATGGGGAAGATG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGAGAAACCACAAGTTCTAAGGGGTCTCTTCTATGGGGAAGATG  737

seq1  GTAGTGTAGCGGTAGATCTGCCCAATCTAGGCTCACAGCATGTATTCATA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTAGCGGTAGATCTGCCCAATCTAGGCTCACAGCATGTATTCATA  787

seq1  TTAATTGAGTTGTGTTTTCATTGCCCGGGCTTATTTCGGTTGGAGATTTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAGTTGTGTTTTCATTGCCCGGGCTTATTTCGGTTGGAGATTTA  837

seq1  CCACAACAAATTGGTGCCCAATGTATTGATTTGAACTCAACTAACCTGAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAAATTGGTGCCCAATGTATTGATTTGAACTCAACTAACCTGAG  887

seq1  GTAAAATTTTACTGCCCCCCAACCCCTGAATGGGGCTTGGGCAGCAAAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTTACTGCCCCCCAACCCCTGAATGGGGCTTGGGCAGCAAAAT  937

seq1  AGGCTACAGCAGTGTGGATTCGAAGCTGACTGGGTTTGAGGGGCCTACAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACAGCAGTGTGGATTCGAAGCTGACTGGGTTTGAGGGGCCTACAG  987

seq1  AGAATGGCAGAGAGGCATATATGCCAGAGAGAGCCTTTCTATGTTCGATT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCAGAGAGGCATATATGCCAGAGAGAGCCTTTCTATGTTCGATT  1037

seq1  TCCAGTATCCTTCGCTCTCCACTCTGCCTCCCCCACCCCCAAACAGGGAC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATCCTTCGCTCTCCACTCTGCCTCCCCCACCCCCAAACAGGGAC  1087

seq1  ACAGACAATGCATGTCTGTCTACACTCAGCTCTTCCCTGTGAATAAAGAC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAATGCATGTCTGTCTACACTCAGCTCTTCCCTGTGAATAAAGAC  1137

seq1  TCAACTCAGGAGACAAAGGTACAAAGGGCTCCAGACCAGGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCAGGAGACAAAGGTACAAAGGGCTCCAGACCAGGAATTC  1182


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