MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-338C21
Chromosome	X (Build37)
Map Location	102,180,714 - 102,367,562
singlet/doublet	doublet
Overlap gene	LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik
Upstream gene	C77370, Vcp-ps, EG621542, Uprt, Zdhhc15, Magee2, LOC622098
Downstream gene	LOC622202, LOC100043213, LOC668458, Cypt2, EG633570, Fgf16, Atrx, 2610529C04Rik, Cox7b, Atp7a, Tlr13
Link	Open Mouse BAC browser

Click to get alignment info.

name	C77370 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245555 MGI:2148050
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vcp-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:236937
definition	note : valosin containing protein pseudogene pseudo : _no_value

name	EG621542 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621542 MGI:3648913
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins

name	Uprt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:331487 MGI:2685620
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zdhhc15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108672 MGI:1915336
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Magee2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:272790 MGI:2148316
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC622098 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622098
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 46 ESTs, 8 Proteins pseudo : _no_value

name	LOC676331 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:676331
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	5530601H04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71445 MGI:1918695
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	2610029G23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67683 MGI:1914933
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Magee1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107528 MGI:2148149
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC622159 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622159
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins pseudo : _no_value

name	LOC668454 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668454
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	E530001F21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:279610 MGI:3036288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	LOC622202 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622202
definition	note : ribosomal protein L30 pseudogene pseudo : _no_value

name	LOC100043213 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	LOC668458 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 31 ESTs, 12 Proteins pseudo : _no_value

name	Cypt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245566 MGI:2676331
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG633570 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:633570 MGI:3649027
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 256 ESTs, 6 Proteins

name	Fgf16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80903 MGI:1931627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atrx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22589 MGI:103067
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2610529C04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67075 MGI:1914325
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cox7b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66142 MGI:1913392
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp7a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11977 MGI:99400
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tlr13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:279572 MGI:3045213
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C77370 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116325978 GeneID:245555 MGI:2148050
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence C77370 transcript_id : NM_001077354.1

name	EG621542 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83003142 GeneID:621542 MGI:3648913
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : predicted gene, EG621542 transcript_id : XM_887355.1

name	Uprt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487134 GeneID:331487 MGI:2685620
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) transcript_id : NM_001081189.1

name	Zdhhc15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388664 GeneID:108672 MGI:1915336
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, DHHC domain containing 15 transcript_id : NM_175358.3

name	Magee2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62990116 GeneID:272790 MGI:2148316
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melanoma antigen, family E, 2 transcript_id : NM_053206.1

name	5530601H04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271853 GeneID:71445 MGI:1918695
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : RIKEN cDNA 5530601H04 gene transcript_id : XM_001479596.1

name	2610029G23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803459 GeneID:67683 MGI:1914933
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610029G23 gene transcript_id : NM_026312.3

name	Magee1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111378376 GeneID:107528 MGI:2148149
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melanoma antigen, family E, 1 transcript_id : NM_053201.3

name	LOC100043213 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271856 GeneID:100043213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical protein LOC100043213 transcript_id : XM_001479629.1

name	Cypt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91206397 GeneID:245566 MGI:2676331
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine-rich perinuclear theca 2 transcript_id : NM_173436.1

name	EG633570 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407734 GeneID:633570 MGI:3649027
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 256 ESTs, 6 Proteins product : predicted gene, EG633570 transcript_id : XM_001001613.1

name	Fgf16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126116562 GeneID:80903 MGI:1931627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibroblast growth factor 16 transcript_id : NM_030614.2

name	Atrx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678608 GeneID:22589 MGI:103067
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : alpha thalassemia/mental retardation syndrome X-linked homolog (human) transcript_id : NM_009530.1

name	2610529C04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981110 GeneID:67075 MGI:1914325
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610529C04 gene transcript_id : NM_025952.2

name	Cox7b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909318 GeneID:66142 MGI:1913392
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome c oxidase subunit VIIb transcript_id : NM_025379.2

name	Atp7a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352884 GeneID:11977 MGI:99400
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, Cu++ transporting, alpha polypeptide transcript_id : NM_009726.3

name	Tlr13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45429998 GeneID:279572 MGI:3045213
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor 13 transcript_id : NM_205820.1

name	C77370 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116325979 GeneID:245555 MGI:2148050
definition	GO_function : GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006260 - DNA replication [Evidence IEA] codon_start : 1 product : hypothetical protein LOC245555 protein_id : NP_001070822.1

name	EG621542 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83003143 GeneID:621542 MGI:3648913
definition	codon_start : 1 product : similar to 39S ribosomal protein L30, mitochondrial precursor (L30mt) (MRP-L30) protein_id : XP_892448.1

name	Uprt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487135 GeneID:331487 MGI:2685620
definition	codon_start : 1 product : uracil phosphoribosyltransferase (FUR1) homolog protein_id : NP_001074658.1

name	Zdhhc15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425060 CCDS:CCDS30332.1 GeneID:108672 MGI:1915336
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016409 - palmitoyltransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045184 - establishment of protein localization [Evidence IDA]; GO:0018345 - protein palmitoylation [Evidence IDA]; GO:0016188 - synaptic vesicle maturation [Evidence IMP] [Evidence IGI] codon_start : 1 product : zinc finger, DHHC domain containing 15 protein_id : NP_780567.1

name	Magee2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62990117 CCDS:CCDS30333.1 GeneID:272790 MGI:2148316
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : melanoma antigen, family E, 2 protein_id : NP_444436.1

name	5530601H04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271854 GeneID:71445 MGI:1918695
definition	codon_start : 1 product : hypothetical protein LOC71445 protein_id : XP_001479646.1

name	2610029G23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385810 CCDS:CCDS30334.1 GeneID:67683 MGI:1914933
definition	codon_start : 1 note : novel protein containing Domain of Unknown Function (DUF757) product : hypothetical protein LOC67683 protein_id : NP_080588.1

name	Magee1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111378377 GeneID:107528 MGI:2148149
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0030425 - dendrite [Evidence IDA]; GO:0016010 - dystrophin-associated glycoprotein complex [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0048471 - perinuclear region [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0045211 - postsynaptic membrane [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IPI] [Evidence IEP] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : melanoma antigen, family E, 1 protein_id : NP_444431.3

name	LOC100043213 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271857 GeneID:100043213
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479679.1

name	Cypt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91206398 CCDS:CCDS30335.1 GeneID:245566 MGI:2676331
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation product : cysteine-rich perinuclear theca 2 protein_id : NP_775612.1

name	EG633570 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407735 GeneID:633570 MGI:3649027
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001001613.1

name	Fgf16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126116563 CCDS:CCDS30336.1 GeneID:80903 MGI:1931627
definition	codon_start : 1 product : fibroblast growth factor 16 protein_id : NP_085117.2

name	Atrx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678609 GeneID:22589 MGI:103067
definition	GO_component : GO:0000792 - heterochromatin [Evidence IDA]; GO:0000228 - nuclear chromosome [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003682 - chromatin binding [Evidence IDA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0030900 - forebrain development [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 exception : mismatches in translation note : X-linked nuclear protein; alpha thalassemia/mental retardation syndrome (X-linked) product : alpha thalassemia/mental retardation syndrome X-linked homolog protein_id : NP_033556.1

name	2610529C04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981111 GeneID:67075 MGI:1914325
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0008250 - oligosaccharyl transferase complex [Evidence ISS] GO_function : GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence ISS] GO_process : GO:0018279 - protein amino acid N-linked glycosylation via asparagine [Evidence ISS] codon_start : 1 exception : mismatches in translation product : implantation-associated protein protein_id : NP_080228.2

name	Cox7b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384754 GeneID:66142 MGI:1913392
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005746 - mitochondrial electron transport chain [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : cytochrome c oxidase subunit VIIb protein_id : NP_079655.1

name	Atp7a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982812 GeneID:11977 MGI:99400
definition	GO_component : GO:0043025 - cell soma [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IDA] [Evidence IEA]; GO:0030140 - trans-Golgi network transport vesicle [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA] [Evidence ISS]; GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0005507 - copper ion binding [Evidence ISS] [Evidence IEA]; GO:0005375 - copper ion transporter activity [Evidence IEA]; GO:0004008 - copper-exporting ATPase activity [Evidence ISS] [Evidence IDA] [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0046873 - metal ion transporter activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IEA]; GO:0030199 - collagen fibril organization [Evidence IMP]; GO:0006878 - copper ion homeostasis [Evidence IMP]; GO:0006825 - copper ion transport [Evidence IMP] [Evidence IDA] [Evidence ISS]; GO:0042417 - dopamine metabolism [Evidence IMP]; GO:0042414 - epinephrine metabolism [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0007626 - locomotory behavior [Evidence IMP]; GO:0008152 - metabolism [Evidence IEA]; GO:0030001 - metal ion transport [Evidence IEA]; GO:0042421 - norepinephrine biosynthesis [Evidence IMP]; GO:0042415 - norepinephrine metabolism [Evidence IMP]; GO:0018205 - peptidyl-lysine modification [Evidence IMP]; GO:0043473 - pigmentation [Evidence IMP]; GO:0043588 - skin development [Evidence IMP]; GO:0006810 - transport [Evidence IEA]; GO:0006568 - tryptophan metabolism [Evidence IMP]; GO:0006570 - tyrosine metabolism [Evidence IMP] codon_start : 1 exception : mismatches in translation note : Menkes protein product : ATPase, Cu++ transporting, alpha polypeptide protein_id : NP_033856.2

name	Tlr13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45429999 CCDS:CCDS30338.1 GeneID:279572 MGI:3045213
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 product : toll-like receptor 13 protein_id : NP_991389.1

name	LOC676331 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676331
definition	number : 1 pseudo : _no_value

name	LOC668454 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668454
definition	number : 2 pseudo : _no_value

name	LOC668454 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668454
definition	number : 1 pseudo : _no_value

name	LOC622098 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271852 GeneID:622098
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 46 ESTs, 8 Proteins product : similar to Ribosomal protein L12 pseudo : _no_value transcript_id : XR_034284.1

name	LOC622159 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271855 GeneID:622159
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins product : similar to spermine synthase pseudo : _no_value transcript_id : XR_034293.1

name	E530001F21Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:95006997 GeneID:279610 MGI:3036288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E530001F21 gene pseudo : _no_value transcript_id : NR_002167.2

name	LOC668458 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271858 GeneID:668458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 31 ESTs, 12 Proteins product : similar to small GTP binding protein pseudo : _no_value transcript_id : XR_034298.1

clone name	MSMg01-329G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055F12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-093K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093C22
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-338C21.b	B6Ng01-338C21.g
ACC	GA122562	GA122563
length	1,106	970
definition	B6Ng01-338C21.b	B6Ng01-338C21.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(102,366,444 - 102,367,562)	(102,180,714 - 102,181,411)
sequence	gaattcaaaagaatgatagtagatatgtttaaaaagtaaaagattaaata aacttctggaagaatttcaaaagaatacaaacaaatgaatgaaataaaga atgtaatatggtatataaaaatggaattcaataaagagatataaaaatcc tcagaatgaatcatgagggaaacaatacctgggcttgaagacaagataaa tgagttggagcattcatctaagaacaaacatagataaataaaaacattaa cagaacatgtaagatcttttgggacaccataaaaagacacaatctataaa ttgtgggcataaaagaagtccattctaacaccatagaaaatattttttag ctatattgtaacagaaaaaaatttgcaaatctatgaaaagaggttcccat ccaaatgaaagagacatatagaacacaaaaagaaagtccccatgtctact gcatttaaagtgccaaatatacaaaagaaagagaatataaatgctagaag gacttggagcaatatatttcaagttctgaaataccacagctgccaagcaa cacagaggagcagagtttggttcccagcatccttcccatgtatctcatca aggatactataccacagcaagaacatgtcatggttgaagggaaaattcca agataaaggtaggctaacataatgtttttctacaaacacagctctaatca tcccatccagatactttcagagtatagtatttctcagcatcccacagaac tttctttcaaatatgtcacacatgaagatacaatgcacatttcagcaaat ataggaaaactgaaataacttcttatgttttatttgatggaattaccatc aaatttattaccaccattaacaattacagattattaaaaataattacaag tagttgttaccattactatgatggaacaagaaatcaatacaagaaaaata cagaaattcaaagattaataacacccaattgaatgatgaatggatcactg agaaaccaagacacttaaagattcctggaacataaagtaaaagtttaaat gtatcaaatcttatatgattcaataaagcagtctagaggaaagtttaaat taataa	gaattctacctatcacacacacacatacacacacacacacacacacacac acacacacactttgactttaggtttgtacaaaggcagaatctataaacat ttaataaatacatagaacttaaatgtttatgtggaaaatgaacatcaaac aaagcatgaacaaaaatgaaagctatgtatcaggatgatatataatacag gtgtgatggttaattttaattgttcatttggcataatctagaatcacaca ggaagagagtatcaataaggggttgtctagatcaggttggcctatgggca tgatgagggggactatcctgattatgtttactgatgtgggtaaatccatc ccactgtgagtggtataatttcttggacttggtttctggtgagaaggtgc tgagcacaaatatacatgcatacaatcacttctctttgttcttgactgtg gatttaaagttcctgactctgactttgccactatggtggactataatctg aaattgtgggtaaaaataagttttttctccactaagttgatttttattca tttttattttaaaatatttttcatacaatatattttgagcatattccccc ccccccaacttcttccagaccgctggctcttacatcctttctgatccctc ttctgtgacattccctgagccaggcataggggttttgttgtagatgtttc agttggggttgaacacaccacagttgtggatctctgtaatggttttctat ctactgcaagaaagaaggtgatgggcaaagctgaatttatctctgtatat ggataaatatttagagtatcattataaattatattggtttagtgaagtgg cagtagccaattttcttggtctcaccagccaagggtaatagggtagggtt acagtactggttatgaattcccttctgttgagtgggcttaagcccaatca gatggctgttggttacccca
quality values	Open. Hide. 58 31 33 29 58 41 23 62 62 62 62 62 27 37 49 33 37 62 62 62 62 62 47 42 54 41 48 62 26 20 20 28 24 24 28 27 28 49 49 49 43 62 59 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 59 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 47 39 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 48 58 58 58 58 58 58 58 58 58 58 58 58 58 58 48 58 58 58 58 58 58 58 58 54 58 58 58 58 58 54 58 58 58 54 49 44 58 58 52 58 58 54 58 52 58 58 58 58 45 54 58 48 58 58 53 54 58 52 58 58 58 54 58 52 58 41 39 58 58 54 52 58 58 58 58 51 58 58 40 51 58 58 42 42 51 58 58 52 58 58 58 58 47 58 51 53 45 49 58 51 58 50 48 50 58 58 58 58 50 58 58 58 49 58 54 58 43 42 58 58 58 58 58 40 32 51 50 33 28 51 53 51 32 53 58 48 49 58 27 52 51 58 36 50 50 58 42 46 53 46 53 51 54 32 58 58 58 44 40 50 30 43 28 44 50 51 41 58 40 53 53 53 39 53 37 49 50 53 42 51 41 44 44 40 53 38 46 35 41 53 32 32 47 50 54 47 52 39 42 54 32 52 37 49 40 52 45 34 33 54 44 41 51 42 41 37 51 37 53 40 18 34 40 45 45 29 54 42 35 46 51 47 45 34 54 35 40 30 54 44 36 36 35 44 45 32 35 40 40 53 32 52 37 49 52 42 34 24 32 47 20 28 41 54 31 52 36 32 53 49 53 39 42 29 47 32 47 36 52 31 42 45 34 33 53 52 51 40 32 32 52 46 49 36 34 32 32 32 33 37 38 31 44 27 29 41 31 51 51 31 31 27 47 32 31 31 32 41 40 34 34 29 46 26 20 21 21 45 30 26 51 42 31 48 42 31 33 32 31 26 20 15 33 26 26 31 46 28 31 33 22 27 41 42 32 42 19 31 37 24 33 27 28 34 33 46 46 46 29 30 25 24 21 39 31 31 26 28 31 30 31 31 29 28 31 21 33 24 26 18 20 33 44 31 31 31 30 31 32 30 20 30 38 23 25 22 29 19 27 31 43 16 33 35 21 21 26 16 6 9 25 31 38 48 44 43 25 32 29 33 24 38 35 48 22 27 30 20 20 9 25 10 33 11 17 24 30 24 18 20 22 16 14 24 10 7 12 19 20 34 21 23 31 32 27 24 23 22 22 21 22 25 10 32 28 23 19 29 33 16 12 6 21 9 9 16 10 26 24 17 16 7 23 17 22 14 34 15 13 17 19 19 11 20 22 16 19 11 6 11 16 28 9 28 24 16 15 25 38 38 23 19 23 47 28 21 40 20 12 12 7 7 15 7 11 28 24 10 14 12 21 14 6 7 19 12 21 13 19 20 20 8 14 11 29 24 12 22 19 19 17 22 9 8 4 13 13 12 11 6 6 4 7 28 13 8 26 7 18 6 6 4 4 3 2	Open. Hide. 62 44 44 44 62 62 62 26 34 34 17 12 24 9 12 15 14 62 43 46 62 62 54 54 54 62 62 59 38 38 54 59 59 59 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 59 51 49 34 18 30 18 27 18 25 54 54 62 54 32 54 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 54 54 62 62 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 62 62 59 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 42 62 62 62 62 62 62 62 62 62 62 62 62 54 58 58 54 58 52 44 52 54 58 58 58 58 42 58 58 54 58 58 58 58 47 58 58 54 58 54 52 54 54 58 58 52 58 58 58 54 41 58 58 58 54 54 47 58 58 42 58 58 58 58 39 58 54 58 58 58 54 58 58 58 54 52 58 58 58 58 58 49 49 54 58 58 33 58 58 58 58 58 58 58 58 54 58 58 53 58 52 51 53 58 58 58 41 41 47 58 58 58 58 58 58 45 35 49 48 54 51 42 58 50 58 50 41 46 58 35 51 51 54 51 58 58 50 54 53 54 43 44 50 46 51 49 48 50 54 48 49 50 42 50 40 40 51 51 51 53 58 49 47 50 58 50 50 47 32 41 50 52 38 51 51 39 53 58 32 54 40 39 50 52 50 32 37 30 8 58 58 38 50 58 58 50 53 28 51 51 32 52 32 47 34 40 30 38 54 40 35 35 35 37 52 54 54 54 31 47 34 33 33 37 42 52 39 52 52 50 53 53 36 53 37 45 38 46 35 25 38 31 53 37 33 44 34 26 33 33 41 46 33 54 54 26 33 42 42 40 42 33 31 37 40 45 31 40 45 29 47 49 42 26 53 53 13 51 33 32 43 27 53 53 32 32 32 46 37 33 40 40 26 52 32 32 52 51 31 32 40 45 36 32 45 31 35 31 18 27 31 46 28 30 31 51 31 31 30 26 46 18 31 27 51 26 30 30 30 29 29 25 45 30 29 31 51 9 22 31 31 28 26 16 30 33 31 37 48 31 31 30 28 31 26 37 20 28 31 31 31 32 32 31 31 10 6 9 20 26 18 48 46 9 21 13 39 25 25 21 31 31 31 31 26 21 27 17 31 23 16 18 21 46 28 23 25 29 32 36 24 33 24 20 32 18 41 26 8 28 20 34 27 29 29 33 35 31 27 26 7 15 14 20 33 38 33 32 17 25 36 19 19 31 32 26 38 17 19 18 30 18 21 31 48 13 20 7 14 14 22 21 24 25 24 11 21 19 22 20 7 31 14 21 25 18 32 34 20 21 21 26 11 18 24 32 39 34 30 23

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_102366444_102367562
seq2: B6Ng01-338C21.b_49_1154 (reverse)

seq1  TTATAAATTTAAACTCTCCTCTTAGGACTGCTTTTATTGAATCATATAAG  50
      |||| |||||||||| ||||||   |||||| ||||||||||||||||||
seq2  TTATTAATTTAAACTTTCCTCT--AGACTGC-TTTATTGAATCATATAAG  47

seq1  ATTTGATACATTTTAAAACTTTTTACTTTATGTTCCAGGAATCTTTAAGT  100
      |||||||||||||  |||| ||||||||||||||||||||||||||||||
seq2  ATTTGATACATTT--AAAC-TTTTACTTTATGTTCCAGGAATCTTTAAGT  94

seq1  GTCTTGGTTTCCTCAGTGATCCATTCATCATTCAATTGGGTGTTATTTAA  150
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  GTCTTGGTTT-CTCAGTGATCCATTCATCATTCAATTGGGTGTTA-TTAA  142

seq1  TCTTTTTGAATTTCTGTATTTTTTCTTGTTATTGATTTCTTTGTTCCATC  200
      ||  |||||||||||||| ||||||||| |||||||||| ||||||||||
seq2  TC--TTTGAATTTCTGTA-TTTTTCTTG-TATTGATTTC-TTGTTCCATC  187

seq1  ATAGTAATGGTAACAACTACTTGTAATTATTTTTAATAATCTGTAATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATGGTAACAACTACTTGTAATTATTTTTAATAATCTGTAATTGT  237

seq1  TAATGGTGGTAATAAATTTGATGGTAATTCCATCAAATAAAACATAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGGTAATAAATTTGATGGTAATTCCATCAAATAAAACATAAGAA  287

seq1  GTTATTTCAGTTTTCCTATATTTGCTGAAATGTGCATTGTATCTTCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCAGTTTTCCTATATTTGCTGAAATGTGCATTGTATCTTCATGT  337

seq1  GTGACATATTTGAAAGAAAGTTCTGTGGGATGCTGAGAAATACTATACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATATTTGAAAGAAAGTTCTGTGGGATGCTGAGAAATACTATACTC  387

seq1  TGAAAGTATCTGGATGGGATGATTAGAGCTGTGTTTGTAGAAAAACATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTATCTGGATGGGATGATTAGAGCTGTGTTTGTAGAAAAACATTA  437

seq1  TGTTAGCCTACCTTTATCTTGGAATTTTCCCTTCAACCATGACATGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCTACCTTTATCTTGGAATTTTCCCTTCAACCATGACATGTTCT  487

seq1  TGCTGTGGTATAGTATCCTTGATGAGATACATGGGAAGGATGCTGGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGTATAGTATCCTTGATGAGATACATGGGAAGGATGCTGGGAAC  537

seq1  CAAACTCTGCTCCTCTGTGTTGCTTGGCAGCTGTGGTATTTCAGAACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTGCTCCTCTGTGTTGCTTGGCAGCTGTGGTATTTCAGAACTTG  587

seq1  AAATATATTGCTCCAAGTCCTTCTAGCATTTATATTCTCTTTCTTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTGCTCCAAGTCCTTCTAGCATTTATATTCTCTTTCTTTTGTA  637

seq1  TATTTGGCACTTTAAATGCAGTAGACATGGGGACTTTCTTTTTGTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCACTTTAAATGCAGTAGACATGGGGACTTTCTTTTTGTGTTCT  687

seq1  ATATGTCTCTTTCATTTGGATGGGAACCTCTTTTCATAGATTTGCAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTCTTTCATTTGGATGGGAACCTCTTTTCATAGATTTGCAAATT  737

seq1  TTTTTCTGTTACAATATAGCTAAAAAATATTTTCTATGGTGTTAGAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTTACAATATAGCTAAAAAATATTTTCTATGGTGTTAGAATGG  787

seq1  ACTTCTTTTATGCCCACAATTTATAGATTGTGTCTTTTTATGGTGTCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTTATGCCCACAATTTATAGATTGTGTCTTTTTATGGTGTCCCA  837

seq1  AAAGATCTTACATGTTCTGTTAATGTTTTTATTTATCTATGTTTGTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTTACATGTTCTGTTAATGTTTTTATTTATCTATGTTTGTTCTT  887

seq1  AGATGAATGCTCCAACTCATTTATCTTGTCTTCAAGCCCAGGTATTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATGCTCCAACTCATTTATCTTGTCTTCAAGCCCAGGTATTGTTT  937

seq1  CCCTCATGATTCATTCTGAGGATTTTTATATCTCTTTATTGAATTCCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATGATTCATTCTGAGGATTTTTATATCTCTTTATTGAATTCCATT  987

seq1  TTTATATACCATATTACATTCTTTATTTCATTCATTTGTTTGTATTCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATACCATATTACATTCTTTATTTCATTCATTTGTTTGTATTCTTT  1037

seq1  TGAAATTCTTCCAGAAGTTTATTTAATCTTTTACTTTTTAAACATATCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCTTCCAGAAGTTTATTTAATCTTTTACTTTTTAAACATATCTA  1087

seq1  CTATCATTCTTTTGAATTC  1119
      |||||||||||||||||||
seq2  CTATCATTCTTTTGAATTC  1106

seq1: chrX_102180714_102181411
seq2: B6Ng01-338C21.g_67_764

seq1  GAATTCTACCTATCACACACACACATACACACACACACACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTATCACACACACACATACACACACACACACACACACACAC  50

seq1  ACACACACACTTTGACTTTAGGTTTGTACAAAGGCAGAATCTATAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTTTGACTTTAGGTTTGTACAAAGGCAGAATCTATAAACAT  100

seq1  TTAATAAATACATAGAACTTAAATGTTTATGTGGAAAATGAACATCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAATACATAGAACTTAAATGTTTATGTGGAAAATGAACATCAAAC  150

seq1  AAAGCATGAACAAAAATGAAAGCTATGTATCAGGATGATATATAATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGAACAAAAATGAAAGCTATGTATCAGGATGATATATAATACAG  200

seq1  GTGTGATGGTTAATTTTAATTGTTCATTTGGCATAATCTAGAATCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGGTTAATTTTAATTGTTCATTTGGCATAATCTAGAATCACACA  250

seq1  GGAAGAGAGTATCAATAAGGGGTTGTCTAGATCAGGTTGGCCTATGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGTATCAATAAGGGGTTGTCTAGATCAGGTTGGCCTATGGGCA  300

seq1  TGATGAGGGGGACTATCCTGATTATGTTTACTGATGTGGGTAAATCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGGGGGACTATCCTGATTATGTTTACTGATGTGGGTAAATCCATC  350

seq1  CCACTGTGAGTGGTATAATTTCTTGGACTTGGTTTCTGGTGAGAAGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGAGTGGTATAATTTCTTGGACTTGGTTTCTGGTGAGAAGGTGC  400

seq1  TGAGCACAAATATACATGCATACAATCACTTCTCTTTGTTCTTGACTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAAATATACATGCATACAATCACTTCTCTTTGTTCTTGACTGTG  450

seq1  GATTTAAAGTTCCTGACTCTGACTTTGCCACTATGGTGGACTATAATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAGTTCCTGACTCTGACTTTGCCACTATGGTGGACTATAATCTG  500

seq1  AAATTGTGGGTAAAAATAAGTTTTTTCTCCACTAAGTTGATTTTTATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGGGTAAAAATAAGTTTTTTCTCCACTAAGTTGATTTTTATTCA  550

seq1  TTTTTATTTTAAAATATTTTTCATACAATATATTTTGAGCATATTCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTAAAATATTTTTCATACAATATATTTTGAGCATATTCCCCC  600

seq1  CCCCCCAACTTCTTCCAGACCGCTGGCTCTTACATCCTTTCTGATCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAACTTCTTCCAGACCGCTGGCTCTTACATCCTTTCTGATCCCTC  650

seq1  TTCTGTGACATTCCCTGAGCCAGGCATAGGGGTTTTGTTGTAGATGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACATTCCCTGAGCCAGGCATAGGGGTTTTGTTGTAGATGTT  698

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Alignment Information