BAC Information

Click to search

BAC

Clone NameB6Ng01-338F07
ChromosomeX (Build37)
Map Location 3,642,755 - 3,646,189
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385516, LOC434721, LOC668957, LOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961
Downstream geneLOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338F07.bB6Ng01-338F07.g
ACCGA122669GA122670
length1,2141,169
definitionB6Ng01-338F07.b B6Ng01-338F07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaactccaacaacaaaagtaacaggaagcaacaatgactattcc
tcaatatctcttaatatcttttaatatcaatggactcaattctccaatta
aaaggtatagactgacagagtggttatgtaaacagggcccaaaatttcac
tgcatagaggaaatccatctcagtgacaaagacagacactaactccaagt
aaaggactggaaaacaattttccaagtaaatggtcacaagaaccaggctg
gagtagccattctaatcttgaataaaatcgactttctacctcatgttata
aaaagataaaaaatgaaaaaaaaaagaaaagaaaagaaaagaaaagaaaa
tgagagacaattcatactaatcaaaggtaaaatttatcaagattaactct
aaattctgaacatctatgctctaaatgcaagggcagccacattcattaaa
gaaactatagtaaagttcaaaccacacaatgtaccacacacggtaataat
gagagactttaacaccccacactcatcaatggacagatcctggaaaaaga
aaataaaaagacaaagtgaaactaactgaagttatgaaacatatgtattt
aacagatatctacagaacattttatactaaaaggaaaggatataactttt
tcttagcacctcatagtaccttctccaaagttgaccatataattcgtcac
aaaataggcctcaacaaatagaagaagattgaaattatcccatgcatcct
atcagatcaccacagactaaggctgatcttcaatagcaatataaataata
gaaagtcaacgttcactggaaggtgaacaacattctactcaatgatgaca
tggtcaaggaagaaataaagaaagaaattaaagacttttttagagtttaa
tgaaaatgaagccacaaaatacccacacttatgggacacaatgaaagcag
tcttaagaggaaagtcatagctctgagtgcctccaaaaagaaactgtagt
gagcatacattagagcttgacagcacacctgaagctctagaacaaaaaag
aagctatttcacaagagtagatgcagaaaatatccaaaacagggctgaat
cagcatgtaagaaacaaaaagattctatattaagatcatcaaccgggaac
tggtctggatgcacaattgatgaacctagcggaaccttgcctagaggggc
atataaagagttcg
gaattccaagataaactgcaagatgtttgaagcctgcaatcagcatctgc
cccagatgtccatccctttctatgtacttttattgttcccccttggcccc
tgcctattttctcccattgtgtgcttataatcaggctcctagcctccatt
aaatagaatatgctcaggccagggagtggcactattagaaggaattgccc
tgttggagtaggtatgaccttgttggagtaggtttgtcactctgaaagtg
ggttttaatatcctacttctagctgcatagaagccagtattctcctagta
gcctttagatgaagatatagaactctcaggtccttttgcaccatgcctgc
ctagatgctgccatgtttccaccttgatttttatggactaaacctctgaa
cctgtaagccaaaaccaattaaatgttgtccttataagagtttcctctgt
cacagtgtttgttcgcagcagtaaaaccctgactaaaacaaatacataaa
aacatatgtttgacatacacagtcagatcacactgagtggggcaagatac
ctaaaagcacagaaaaaggaaaatcctttgagtaattgttattttcaaga
aaaatctcaggtctagcagggcacaagattcttatgaataaatgtattct
cacctacttccaatgtggaattgatatatttgatttttgagatgattttc
aggagttactagaatgtgcatgttaaaatacaacacaaattgggtgatat
ttcagcttaaaatgaaccaacttgtcccgcactcacacaaagtaaaggaa
aaattaacctgtagaggttgtaacctgcagggttttgagctttccgacta
ccctgtcgcatctgggaattcacctaagacaattctctaccttcctccat
cagctccagccatgccaccatccagctgctgcttctcatgcttcccaggt
cttctctgaccactgagcctcagcactgtcgtcacattatctggaatgca
tattctcttgatgctgctgaaggccacactctcctctatctgcatgtttt
catcagactcgggaggttccctggatacccttcctggccactctgacctc
tctcgaaaaggaattgctcacccttggcatctcattttttttgacgttag
gcctgtccatgcctctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_3642755_3646189
seq2: B6Ng01-338F07.g_67_1235 (reverse)

seq1  AAGAGAGAGCAT-GACAAGCCTAACTTC-AAAAAAATGAAATTCC-AGGG  47
      ||||||| |||| |||| ||||||| || |||||||||| || || ||||
seq2  AAGAGAG-GCATGGACAGGCCTAACGTCAAAAAAAATGAGATGCCAAGGG  49

seq1  TGAGCA--TTCTTTTC-AGAGA-GTCAGAGTGGCCAGGAAAGGTAT-CAA  92
      ||||||  | |||||| ||||| ||||||||||||||||| ||||| || 
seq2  TGAGCAATTCCTTTTCGAGAGAGGTCAGAGTGGCCAGGAAGGGTATCCAG  99

seq1  GGAACCT-CCGAGTCTGGAATGAAAACATGCAGATAGA-GAGAGTGTGGC  140
      ||||||| |||||||||  ||||||||||||||||||| |||||||||||
seq2  GGAACCTCCCGAGTCTG--ATGAAAACATGCAGATAGAGGAGAGTGTGGC  147

seq1  CTTCAGCAGCATTCAAGAAGAATATGCATTCCAGATAATGTGACGACAGT  190
      ||||||||||| ||||| ||||||||||||||||||||||||||||||| 
seq2  CTTCAGCAGCA-TCAAG-AGAATATGCATTCCAGATAATGTGACGACAG-  194

seq1  TGCTGAGGCTCAGTGGTCAGAGAAGACCTGGGAAGCATGAGAAGCAGCAG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGCTCAGTGGTCAGAGAAGACCTGGGAAGCATGAGAAGCAGCAG  244

seq1  CTGGGATGGTGGCATGGCTGGAGCTGATGGAGGAAGGTAGAGAATTGTCT  290
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-GGATGGTGGCATGGCTGGAGCTGATGGAGGAAGGTAGAGAATTGTCT  293

seq1  TAGGTGAATTCCCAGATGCGACAGGGTAGTCGGAAAGCTCAAAACCCTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAATTCCCAGATGCGACAGGGTAGTCGGAAAGCTCAAAACCCTGC  343

seq1  AGGTTACAACCTCTACAGGGTAATTTTTCCTTTACTTTGTGTGAGTGCGG  390
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGTTACAACCTCTACAGGTTAATTTTTCCTTTACTTTGTGTGAGTGCGG  393

seq1  GACAAGTTGGTTCATTTTAAGCTGAAATATCACCCAATTTGTGTTGTATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTGGTTCATTTTAAGCTGAAATATCACCCAATTTGTGTTGTATT  443

seq1  TTAACATGCACATTCTAGTAACTCCTGAAAATCATCTCAAAAATCAAATA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATGCACATTCTAGTAACTCCTGAAAATCATCTCAAAAATCAAATA  493

seq1  TATCAATTCCACATTGGAAGTAGGTGAGAATACATTTATTCATAAGAATC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTCCACATTGGAAGTAGGTGAGAATACATTTATTCATAAGAATC  543

seq1  TTGTGCCCTGCTAGACCTGAGATTTTTCTTGAAAATAACAATTACTCAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCCTGCTAGACCTGAGATTTTTCTTGAAAATAACAATTACTCAAA  593

seq1  GGATTTTCCTTTTTCTGTGCTTTTAGGTATCTTGCCCCACTCAGTGTGAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCCTTTTTCTGTGCTTTTAGGTATCTTGCCCCACTCAGTGTGAT  643

seq1  CTGACTGTGTATGTCAAACATATGTTTTTATGTATTTGTTTTAGTCAGGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTGTATGTCAAACATATGTTTTTATGTATTTGTTTTAGTCAGGG  693

seq1  TTTTACTGCTGCGAACAAACACTGTGACAGAGGAAACTCTTATAAGGACA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGCTGCGAACAAACACTGTGACAGAGGAAACTCTTATAAGGACA  743

seq1  ACATTTAATTGGTTTTGGCTTACAGGTTCAGAGGTTTAGTCCATAAAAAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAATTGGTTTTGGCTTACAGGTTCAGAGGTTTAGTCCATAAAAAT  793

seq1  CAAGGTGGAAACATGTCAGCATCTAGGCAGGCATGGTGCAAAAGGACCTG  840
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGAAACATGGCAGCATCTAGGCAGGCATGGTGCAAAAGGACCTG  843

seq1  AGAGTTCTATATCTTCATCTAAAGGCTACTAGGAGAATACTGGCTTTTTT  890
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  AGAGTTCTATATCTTCATCTAAAGGCTACTAGGAGAATACTGGCTTCTAT  893

seq1  GCAGCAAGAAGTAGGATATTAAAACCCACTTCCAGAGTGACAAACCTACT  940
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCAGCTAGAAGTAGGATATTAAAACCCACTTTCAGAGTGACAAACCTACT  943

seq1  CCAACAAGGTCATACCTACTCCAAAAGGGCAATTCCTTCTAATAGTGCCA  990
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAACAAGGTCATACCTACTCCAACAGGGCAATTCCTTCTAATAGTGCCA  993

seq1  CTCCCTGGCCTGAGCATATTCAAACCATAACATTCCACTCCCAGGCCCCA  1040
      |||||||||||||||||||||          |||  |             
seq2  CTCCCTGGCCTGAGCATATTC---------TATTTAA------------T  1022

seq1  GTAGGCTTGTTTGAACATATGAATCTTTGGGGCCATGCAGAAGCATAGCA  1090
      | ||||| |   || |   ||| |              | |||||   ||
seq2  GGAGGCTAG---GAGC--CTGATT--------------ATAAGCA---CA  1050

seq1  TAATGCAAAAAACATTTAGTCTAACTTCAAAACTCCCCATTGTCTATAGC  1140
       ||||  | |||    |||                  ||  | | |    
seq2  CAATGGGAGAAA---ATAG-----------------GCAGGGGCCA----  1076

seq1  AGTCTCAACAATTTTAAAACTCCAAAGTTCAAAGTCTCTTCTGATAGTCA  1190
      ||    |||||   ||||| | || ||   ||||        ||| | ||
seq2  AGGGGGAACAA---TAAAAGTACATAG---AAAG-------GGATGGACA  1113

seq1  TCCAATCACATAACTAATCCCCAAAGCAAGAAAGGAATATACCGA-GGCA  1239
      ||                               || | || | ||  |||
seq2  TC----------------------------TGGGGCAGATGCTGATTGCA  1135

seq1  AACTCCAAAC-TC-TGCATCTCTATGTCTGATATCAAAGTGGTCTTCAGA  1287
        || ||||| || ||||  | ||| |  ||  ||               
seq2  GGCTTCAAACATCTTGCA-GTTTATCTTGGAATTC---------------  1169

seq1  TCTCCAACCCTGTGATGGGTTGTGTGTGCTCAGTCCAGGGAGTAGCACTA  1337
                                                        
seq2  --------------------------------------------------  1169

seq1  ATAGAAGATATGGCCCTGTTGGAGTTTGTATGTTACTTTGGGTGTGGGCT  1387
                                                        
seq2  --------------------------------------------------  1169

seq1  TTGATACCCTCATCCTAGCTGCCCAGAAGCCAGTACACTGCTAGCTGCTT  1437
                                                        
seq2  --------------------------------------------------  1169

seq1  TCAGATGAATATGCAGAGCTCCTCCTGCACCAAGCCTGCCTGAATGCCTC  1487
                                                        
seq2  --------------------------------------------------  1169

seq1  TATGTTCCTGCCTTGATGATAATGGATCAAACCTCTAAACCTGTAAGCCA  1537
                                                        
seq2  --------------------------------------------------  1169

seq1  GTCACAATTAAATGTTGTCCTTATAAGAGTTGCCTTGGTCATGGTGTTTG  1587
                                                        
seq2  --------------------------------------------------  1169

seq1  TTCACAGCAGTAAAATCCTAACTAAGACAGAAATTAGTAGTAGAAGTGGG  1637
                                                        
seq2  --------------------------------------------------  1169

seq1  GTATTGCTATGATAGGCCTGACCATGTATTTTTTTGGAAGAATGTAGATT  1687
                                                        
seq2  --------------------------------------------------  1169

seq1  TAGGGACTTTGGATTTGGAAAGGAGTGGAATGCGTTAAATGGGGCTTACT  1737
                                                        
seq2  --------------------------------------------------  1169

seq1  GGGCCATCCTAATAGGAATATGGATGATTTTGTTGCTGAGAGTAATTTGT  1787
                                                        
seq2  --------------------------------------------------  1169

seq1  GCTGGGCTGACCTTTCCCAAGAGGTTTTAAAAAAGAAGAATTTCAGTATG  1837
                                                        
seq2  --------------------------------------------------  1169

seq1  TGGAATAAAGATTGTTTTGTGGTATTTTGGTGGTGAATGTGCCTACTTTT  1887
                                                        
seq2  --------------------------------------------------  1169

seq1  TCCTCTAGTAGAAGTAATCTGCCTGAGGCTAAGGTAAATATACCAAGATT  1937
                                                        
seq2  --------------------------------------------------  1169

seq1  AATTACATTGACAAAGGAAGTCCCAGAAATGCCCAGAATAGACTTTGTTC  1987
                                                        
seq2  --------------------------------------------------  1169

seq1  TCCTTTTACGTCTCACAGTACTGGCTGGTTTTGTGTGTCAACTTGACCCA  2037
                                                        
seq2  --------------------------------------------------  1169

seq1  AGCTGGAGTTATCACTGAGAAAGGAGCCTTCCTTAAGGAAATCCCTCCAT  2087
                                                        
seq2  --------------------------------------------------  1169

seq1  GAGATCCACCTGCAAGGCAGTTTCTCAATTAGTGATCAAGGCAGAGGGTC  2137
                                                        
seq2  --------------------------------------------------  1169

seq1  CGTTGTGGGTGGTGACATCACTGGACTGGTAGTCTTGGGTTCCATATAGA  2187
                                                        
seq2  --------------------------------------------------  1169

seq1  ACCAAGCTGGCCAGGCATGGTGGAGCACGCCTTTAATCCCAGCACTTGGG  2237
                                                        
seq2  --------------------------------------------------  1169

seq1  AGGCAGAGGCAGGTGGGTTTCTGAGTTCAAGGCCAGACTGGTCTACAAAG  2287
                                                        
seq2  --------------------------------------------------  1169

seq1  TGAGTTCCTGGACAGCCAGGGCTATACAGAGAAACCCTGTCTAGAAAAAC  2337
                                                        
seq2  --------------------------------------------------  1169

seq1  CAAAAAAAAAAAAAAAACAAAAAAACAAAAAAACAAAAAAAAAAAAAAAC  2387
                                                        
seq2  --------------------------------------------------  1169

seq1  AAGCTGACCAAGCCAGTGGAAGCAACCAGTAAGTAACATCCCTCCATGGC  2437
                                                        
seq2  --------------------------------------------------  1169

seq1  CTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTT  2487
                                                        
seq2  --------------------------------------------------  1169

seq1  CCTTTGATGGTGAACAGCAATGTGGAAGTGTAAGCTGAATAAACCCTTTC  2537
                                                        
seq2  --------------------------------------------------  1169

seq1  CTCCCCACCTTGCTTCTTGGTCATGATGTTTTGTGCAGAAATTGAAACCA  2587
                                                        
seq2  --------------------------------------------------  1169

seq1  TGACTAAGACACTCATGAAGAACATTTTAAACAAGAGTAGCAAGCCGAGA  2637
                                                        
seq2  --------------------------------------------------  1169

seq1  AAGGAAAAATACAAAGTATATGGTTCAAGAGTTCAATTAAAGGGGCATCA  2687
                                                        
seq2  --------------------------------------------------  1169

seq1  GGAAGTAGAATAGAGCTAAATTCTAAGTTCTAGAAAATACTCCATTAAGG  2737
                                                        
seq2  --------------------------------------------------  1169

seq1  GAGTGGGACTTTGGGGCAAGATCTCTCCCAGCTAAGTTTAGGTCCACCAT  2787
                                                        
seq2  --------------------------------------------------  1169

seq1  GTTGGTATACACCTTTAATGCCGGGTGACAAAGCCAAGGAGATCTCTGAG  2837
                                                        
seq2  --------------------------------------------------  1169

seq1  TTCAAGGATAGAGTGGGACAAAATAAATTGTAGATGAAGAAAAGCTTAAA  2887
                                                        
seq2  --------------------------------------------------  1169

seq1  TCCAGGGGTAGTAGCACACACCTTTAATTCCAGGAGATAAGGATGCAGAT  2937
                                                        
seq2  --------------------------------------------------  1169

seq1  CTCTGAGTTCAAGGTCAATCTACAGATCAAGATCCAAGACAGCCAAGGTT  2987
                                                        
seq2  --------------------------------------------------  1169

seq1  AGTCAGTTAAGCAGGTAGAAAACAGAAAGCTAGTGATAATGTAATAGAAC  3037
                                                        
seq2  --------------------------------------------------  1169

seq1  AAGGGGGGCATGTTCCAGCTCCTGCAAGCAGCAGAACTCAGCAGCTTTGG  3087
                                                        
seq2  --------------------------------------------------  1169

seq1  CCATATGGGTCTGGCTTTAGAGTGAAAAATAGAAGGGACTACTGTGACAA  3137
                                                        
seq2  --------------------------------------------------  1169

seq1  TTGATGCTGGTTAGCTGGAGCTAAGAAATTAGTGGTTATCCCGACCCATG  3187
                                                        
seq2  --------------------------------------------------  1169

seq1  GGACTTAGTTAGTCGTGGGATCGAGGGGGACCAACCATGAAAAAGAAAGA  3237
                                                        
seq2  --------------------------------------------------  1169

seq1  GGCGAGAAAATGGTGCGAGACCATGCAAAGAGTTGTCCAAGTCTATTTAA  3287
                                                        
seq2  --------------------------------------------------  1169

seq1  TGGAGGCTAGGAGCCTGATTATAAGCACACAATGGGAGAAAATAGGCAGG  3337
                                                        
seq2  --------------------------------------------------  1169

seq1  GGCCAAGGGGGAACAATAAAAGTACATAGAAAGGGATGGACATCTGGGGC  3387
                                                        
seq2  --------------------------------------------------  1169

seq1  AGATGCTGATTGCAGGCTTCAAACATCTTGCAGTTTATCTTGGAATTC  3435
                                                      
seq2  ------------------------------------------------  1169