BAC Information

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BAC

Clone NameB6Ng01-338L03
ChromosomeX (Build37)
Map Location 3,640,864 - 3,641,711
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385516, LOC434721, LOC668957, LOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961
Downstream geneLOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338L03.bB6Ng01-338L03.g
ACCGA122909GA122910
length1,217888
definitionB6Ng01-338L03.b B6Ng01-338L03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctgaacataataaaagcaatatacagcaatcca
aacccaacattaaactaaatggagagaaacttgacacaatcccactaaaa
tcaggaatgagacaaggctgcccacttttttcctacctattcaatatagt
acttgaaatcctagccagagcaattagacaacaaaggagataaaggggat
acaaattggaaaggaagaagtcaaaatatcactatttgtaaatgatatga
taatatacataagtggccctaaaaattccaccagagaacttctaaacctg
ataaacagtttcagtgtagtagctggatataaaattaactcaaaaatcag
tggtctttctctacataaaggataaacagcctgaaaaagaaattagggaa
acaatacctttcataatagtcacaaataatatcaaataccgtagtgtgac
tctaactaaggaagtaaaagatctctatgataagatcttcaggtctctga
agaaagaaatcaaagaagatctcagaagatgtaatgatcgcccgtactca
tggattggcaggattaatatagtaaaaatgactatcttgctgaaggcaat
ctaatgattcaatgcaatccccatcaaaattccaactcagttcttcacta
agttagaaagggcaatttgcaaattcatctggaataacaacaacaacaaa
aaaactaggataacaaaaagtattctcaacaattaaagaacctctggtgg
aatcactatgcctgaactcaagctgtattacagagcaattgtgataaaaa
ctacatggtactggtacagcaaaagccgggtagatcaatggaatagagta
gaagacccagaaatgaatccacacacttgagtattgacaagggagctaag
accatccagtgggaaaaagtcagcattttcaacaaatggtgttggaacat
ctataggttatcatgtagagaatgagaattgacccattttatctcttgta
caatcctcaatctaagtggatcaggactccccataaaagcagagactctg
aaacttatagagtagaagtgggaaatctttaaagatatggatgggcacga
ggaaaaaatctgaacagaacagccatgccttttttctgtagatcaatatg
gacagtggaaccttaattgcacttctgtaagaaaagaacccgtttagtta
gaacaatagctcacgca
gaattcaggaatggttcaggagtctgatgaaggtagaggagaggtgttga
agagtaggaggctccctgggatagcaggctattcaaggcagcttggcttg
gcccataaggctcagcaagcagggaagatgtgtgggaatagggattctat
cctctattatccaagagtctgatgaaggtataggacaggtggtagtagaa
tagaagtccctcaggtatagtgaaagaacctagtggggaaacacccactc
atatcccgagtcagacctctgaggactatcaatagcaggctgctccaggc
agcttggattggctgagagggttccccaatttgatttttgataagttcat
acccaataacatggctgctctggcaagcaatcatatccaaagtttttctg
ggtctctgtaatctggctggaaagtagatattctggattactctatgatc
tggctagaatacagacaggtccttacacctttaatagcaaacaatgtagg
taagtttaatttgtagaaggaaaccattatgtttgcaagtgacttctaat
tgagagaagataacaaatcagagcaaggtttgtcagaatgacttagacag
aagatatacccatctcaggagaacagcacaggaatgatttagctgccagt
gtccatggagaagtgtgtacctggaaggagagttggggatggatgggaag
gacagaagagagacaaatcagactaagataaagtttttgatcaggccata
tgtttaattcttaagtctgaatttaaagggtgaaacccatcccccacttt
gccagaatctcctcaggaaaacaagctcagcctgctcagcaggtagtggt
ttcttgaaagaagctgcatatgtggcaggacaatagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_3640864_3641711
seq2: B6Ng01-338L03.g_65_912

seq1  GAATTCAGGAATGGTTCAGGAGTCTGATGAAGGTAGAGGAGAGGTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAATGGTTCAGGAGTCTGATGAAGGTAGAGGAGAGGTGTTGA  50

seq1  AGAGTAGGAGGCTCCCTGGGATAGCAGGCTATTCAAGGCAGCTTGGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGAGGCTCCCTGGGATAGCAGGCTATTCAAGGCAGCTTGGCTTG  100

seq1  GCCCATAAGGTTCAGCAAGCAGGGAAGATGGGTGGGAAAAGGGATTCTAT  150
      |||||||||| ||||||||||||||||||| ||||||| |||||||||||
seq2  GCCCATAAGGCTCAGCAAGCAGGGAAGATGTGTGGGAATAGGGATTCTAT  150

seq1  CCTCTATTATCCAAGAGTCTGATGAAGGTATAGGACAGGTGGTAGTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTATCCAAGAGTCTGATGAAGGTATAGGACAGGTGGTAGTAGAA  200

seq1  TAGAAGTCCCTCAGGTATAGTGAAAGAACCTAGTGGGGAAACACCCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCCCTCAGGTATAGTGAAAGAACCTAGTGGGGAAACACCCACTC  250

seq1  ATATCCCGAGTCAGACCTCTGAGGACTATCAATAGCAGGCTGCTCCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCGAGTCAGACCTCTGAGGACTATCAATAGCAGGCTGCTCCAGGC  300

seq1  AGCTTGGATTGGCTGAGAGGGTTCCCCAATTTGATTTTTGATAAGTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGATTGGCTGAGAGGGTTCCCCAATTTGATTTTTGATAAGTTCAT  350

seq1  ACCCAATAACATGGCTGCTCTGGCAAGCAATCATATCCAAAGTTTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATAACATGGCTGCTCTGGCAAGCAATCATATCCAAAGTTTTTCTG  400

seq1  GGTCTCTGTAATCTGGCTGGAAAGTAGATATTCTGGATTACTCTATGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGTAATCTGGCTGGAAAGTAGATATTCTGGATTACTCTATGATC  450

seq1  TGGCTAGAATACAGACAGGTCCTTACACCTTTAATAGCAAACAATGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGAATACAGACAGGTCCTTACACCTTTAATAGCAAACAATGTAGG  500

seq1  TAAGTTTAATTTGTAGAAGGAAACCATTATGTTTGCAAGTGACTTCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAATTTGTAGAAGGAAACCATTATGTTTGCAAGTGACTTCTAAT  550

seq1  TGAGAGAAGATAACAAATCAGAGCAAGGTTTGTCAGAATGACTTAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAGATAACAAATCAGAGCAAGGTTTGTCAGAATGACTTAGACAG  600

seq1  AAGATATACCCATCTCAGGAGAACAGCACAGGAATGATGTAGCTGCCAGT  650
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGATATACCCATCTCAGGAGAACAGCACAGGAATGATTTAGCTGCCAGT  650

seq1  GTCCATGGAGAAGTGTGTACCTGGAAGGAGAGTTGGGGATGGATGGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGAGAAGTGTGTACCTGGAAGGAGAGTTGGGGATGGATGGGAAG  700

seq1  GACAGAAGAGAGACAAATCAGACTAAGATAAAGTTTTTGATCAAGGCCAT  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GACAGAAGAGAGACAAATCAGACTAAGATAAAGTTTTTGATC-AGGCCAT  749

seq1  ATGTTTAATTCTTAAGTCTGAATTTAAAGGGTGAAACCCATCCCCCACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAATTCTTAAGTCTGAATTTAAAGGGTGAAACCCATCCCCCACTT  799

seq1  TGCCAGAATCTCCTCAGGAAAACAAGCTCAG-CTGCTCAGCAGGTAGTG  848
      ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCCAGAATCTCCTCAGGAAAACAAGCTCAGCCTGCTCAGCAGGTAGTG  848