MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-340F10
Chromosome	X (Build37)
Map Location	141,560,395 - 141,561,540
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
Downstream gene	LOC623591, Lhfpl1, Amot, EG434860, LOC100039313, LOC623697, LOC623731, LOC237096
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC666628 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC666633 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666633
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC100039378 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039378
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 49 ESTs

name	LOC100039243 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039243
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	Alg13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67574 MGI:1914824
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039407 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039407
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Trpc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22067 MGI:109524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039436 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039436
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 38 Proteins

name	Zcchc16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619287 MGI:3588192
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666655 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666655
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC623591 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623591
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 Proteins pseudo : _no_value

name	Lhfpl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237091 MGI:1891214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amot (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27494 MGI:108440
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434860 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434860 MGI:3646381
definition	note : predicted gene, EG434860 pseudo : _no_value

name	LOC100039313 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039313
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC623697 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623697
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	LOC623731 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623731
definition	note : ribosomal RNA processing 15 homolog (S. cerevisiae) pseudogene pseudo : _no_value

name	LOC237096 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:237096
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100039378 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272419 GeneID:100039378
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 49 ESTs product : similar to gag protein transcript_id : XM_001472704.1

name	Alg13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385753 GeneID:67574 MGI:1914824
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparagine-linked glycosylation 13 homolog (S. cerevisiae) transcript_id : NM_026247.1

name	Trpc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130397 GeneID:22067 MGI:109524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily C, member 5 transcript_id : NM_009428.2

name	LOC100039436 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272421 GeneID:100039436
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 37 Proteins product : similar to RIKEN cDNA 2410003J06 gene, transcript variant 1 transcript_id : XM_001472784.1

name	LOC100039436 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272423 GeneID:100039436
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein product : similar to RIKEN cDNA 2410003J06 gene, transcript variant 2 transcript_id : XM_001472802.1

name	Zcchc16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361727 GeneID:619287 MGI:3588192
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, CCHC domain containing 16 transcript_id : NM_001033795.3

name	Lhfpl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328432 GeneID:237091 MGI:1891214
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lipoma HMGIC fusion partner-like 1 transcript_id : NM_178358.3

name	Amot (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125346195 GeneID:27494 MGI:108440
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : angiomotin transcript_id : NM_153319.2

name	LOC100039378 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272420 GeneID:100039378
definition	codon_start : 1 product : similar to gag protein protein_id : XP_001472754.1

name	Alg13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385754 CCDS:CCDS30456.1 GeneID:67574 MGI:1914824
definition	GO_function : GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0030259 - lipid glycosylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glycosyltransferase 28 domain containing 1 protein_id : NP_080523.1

name	Trpc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678435 CCDS:CCDS30457.1 GeneID:22067 MGI:109524
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : transient receptor protein 5; vtransient receptor potential cation channel, subfamily C, member 5; transient receptor potential cation channel subfamily C member 5 product : transient receptor potential cation channel, subfamily C, member 5 protein_id : NP_033454.1

name	LOC100039436 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272422 GeneID:100039436
definition	codon_start : 1 product : similar to RIKEN cDNA 2410003J06 gene isoform 1 protein_id : XP_001472834.1

name	LOC100039436 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272424 GeneID:100039436
definition	codon_start : 1 product : similar to RIKEN cDNA 2410003J06 gene isoform 2 protein_id : XP_001472852.1

name	Zcchc16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486592 GeneID:619287 MGI:3588192
definition	GO_function : GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : gag-like protein; zinc finger CCHC domain containing 16 product : zinc finger, CCHC domain containing 16 protein_id : NP_001028967.2

name	Lhfpl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30387618 CCDS:CCDS30458.1 GeneID:237091 MGI:1891214
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : lipoma HMGIC fusion partner-like 1 protein_id : NP_848135.1

name	Amot (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125346196 GeneID:27494 MGI:108440
definition	GO_component : GO:0005884 - actin filament [Evidence ISS]; GO:0031410 - cytoplasmic vesicle [Evidence ISS]; GO:0030139 - endocytic vesicle [Evidence ISS]; GO:0009897 - external side of plasma membrane [Evidence ISS]; GO:0030027 - lamellipodium [Evidence ISS] [Evidence IDA]; GO:0001726 - ruffle [Evidence ISS] GO_function : GO:0043532 - angiostatin binding [Evidence ISS]; GO:0004872 - receptor activity [Evidence ISS] GO_process : GO:0042074 - cell migration involved in gastrulation [Evidence IMP]; GO:0006935 - chemotaxis [Evidence IMP]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP]; GO:0016525 - negative regulation of angiogenesis [Evidence ISS]; GO:0045766 - positive regulation of angiogenesis [Evidence ISS]; GO:0043536 - positive regulation of blood vessel endothelial cell migration [Evidence ISS]; GO:0040019 - positive regulation of embryonic development [Evidence IMP]; GO:0030334 - regulation of cell migration [Evidence ISS]; GO:0001570 - vasculogenesis [Evidence IMP] codon_start : 1 product : angiomotin protein_id : NP_695231.2

name	LOC666628 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666628
definition	number : 1 pseudo : _no_value

name	LOC666633 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666633
definition	number : 1 pseudo : _no_value

name	LOC100039243 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039243
definition	number : 2 pseudo : _no_value

name	LOC100039243 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039243
definition	number : 1 pseudo : _no_value

name	LOC100039407 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039407
definition	number : 1 pseudo : _no_value

name	LOC666655 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666655
definition	number : 1 pseudo : _no_value

name	LOC623591 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623591
definition	number : 4 pseudo : _no_value

name	LOC623591 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623591
definition	number : 3 pseudo : _no_value

name	LOC623591 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623591
definition	number : 2 pseudo : _no_value

name	LOC623591 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623591
definition	number : 1 pseudo : _no_value

name	LOC100039313 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039313
definition	number : 1 pseudo : _no_value

name	LOC100039313 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039313
definition	number : 2 pseudo : _no_value

name	LOC100039313 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039313
definition	number : 3 pseudo : _no_value

name	LOC623697 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623697
definition	number : 1 pseudo : _no_value

name	LOC237096 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:237096
definition	number : 1 pseudo : _no_value

clone name	MSMg01-441A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366N10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-087E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085N05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-340F10.b	B6Ng01-340F10.g
ACC	GA124074	GA124075
length	1,142	1,186
definition	B6Ng01-340F10.b	B6Ng01-340F10.g
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattcaatttaaagatgaggaattaagatttacaacagctaacttatct gccccagtgatgtacttcgtaactgagataaaagttaaaaaaaaaaagca tatatttttctttctctttttattctttttccccctactactgagatttt tagcccagggtctcacacacgctaggtaagtactctaccactgagtcaca tcatgatccccaaagcatatctttctgttgctacagctttctgctatctg agacagaaaggaaatatgcttaagtcacacacccccattatccttgctga cttaattacacctcccacaggctccatacacagcagctactctaataact ggtattcacatagcaactgattgaaactcattttctagacagtactctat aaaggaaacacagcacaaatcagctccttctaggactttgaaatttcatt tgtgtttctaatgagttgagggaaaattacttgacacatctaaaaataca ctgcatctacattatttgactgggtaggtgcttgtttgttgagtcaggat tctaataacagtttctaactaacacaagactttcatacttctatagttct tcatttaaaggtattgaatctttgtgagcaatgttgttggcagttattga ataatgccaggagatgagaagtttatttgtggttatataccttcatcagt gcaaggttaagtgcatttttattaattcagatgtcagttagctatttaca cttgagaagtgctttaatgcatcagcctcgggaatatccaatccaacaaa ttggctcttaggggaattcatgggaagacaagcttattctttttatatat taaccccatgtttgacaacaactatcaagtaccatggttctcttaatgat gagattacatccattaattcattattaaattcacttgctttcagtttgga acagatatctaatgttatattggataccatagagttaaatttctgccatt taaatcatactcactttacatgctttcattcacttttataataaataaag taataactcctctataaatcatttcagaatattgagtctctgtgaaggtc atggctgctgctggaaaaaacctgctcctaatcacaggtacc	gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc atatatccagaagatgccccaacacgtaagaaggacacatgctccactat gttcatagcagccttatttataatagccagaagctggaaagaacctagat gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa gaaactcacacaatatgtattcactgataagtggatattagccccaaacc taggatacccaagatataagatataatttgctaaacacatgaaactcaag gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa caaaacacccatggaaggagttacagagacggagtttggagctgagatga aaggatggaccatgtagagactgccatagccagggatccaccccataatc agcatccaaacgctgacaccattgcatacattagcaagattttattgaaa ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac acagaagtggatgctcacagtcagctaatggatggatcatagggctccca atggaggagctagagaagtagccaggagctaaaggatctgcaccctatag gtggacacatatgactacagtaccctgagctcatgtctctagctgcatat atatcaagatggctagtcggccattcactgaagagaggccatgactgcaa cttatatgccagtacgggaatccaggtcaatggtgaagtggtggcaggga agtggtgatttaagcggccggagtgtagtgtgctcg
quality values	Open. Hide. 62 47 29 31 62 37 24 62 62 62 47 62 62 59 59 59 28 59 62 62 59 62 54 43 62 62 59 49 59 49 50 31 28 46 28 35 46 49 62 62 62 62 62 62 62 54 54 62 62 62 59 62 62 62 62 59 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 54 54 42 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 59 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 54 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 47 58 58 58 58 58 58 54 58 58 45 54 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 54 58 58 58 58 46 58 54 58 54 51 58 58 58 48 58 58 58 58 50 58 58 58 58 58 58 58 58 52 58 58 58 58 58 58 58 54 50 58 58 54 52 58 58 58 46 46 46 37 58 58 58 52 52 58 58 58 58 58 50 54 58 53 53 52 58 51 58 41 58 58 39 58 58 58 46 51 51 49 50 47 39 58 51 58 58 52 53 53 41 48 33 41 41 51 58 53 40 46 32 52 58 34 58 50 50 40 58 58 46 47 58 58 58 50 58 51 24 51 52 49 52 54 41 53 53 52 54 39 34 53 53 41 50 42 54 42 35 33 52 54 26 41 42 54 40 47 51 45 39 42 54 54 54 45 45 39 38 39 38 46 53 42 36 32 53 37 52 34 45 39 37 52 53 43 34 53 45 37 42 54 53 34 37 18 52 42 46 47 53 35 53 53 40 40 53 34 46 33 32 34 36 32 51 31 31 37 40 35 24 33 33 42 39 28 52 41 51 45 30 31 32 26 32 31 44 34 31 33 33 42 31 21 47 41 26 42 42 51 29 45 42 31 30 31 17 51 51 46 33 35 25 30 29 29 33 51 51 38 34 35 34 31 20 21 32 33 43 43 37 31 30 33 37 31 48 48 48 31 36 31 26 31 31 31 32 31 28 38 46 46 26 25 34 42 28 47 29 31 31 21 21 27 41 18 28 30 36 34 31 29 34 42 38 36 33 31 30 26 34 43 38 17 28 31 32 37 37 32 20 33 26 43 27 20 32 33 26 33 31 31 31 32 17 31 32 32 22 26 33 25 29 20 31 25 24 26 27 21 21 21 26 43 18 24 24 31 23 31 34 35 37 32 34 48 38 26 21 14 28 44 26 32 34 16 32 25 27 18 18 13 18 31 31 31 25 30 18 37 12 21 10 7 6 8 25 15 25 14 22 32 32 23 13 31 32 6 17 16 18 8 25 39 25 33 48 32 32 27 34 13 29 21 28 48 26 19 43 28 22 32 19 22 13 32 7 14 12 27 32 48 26 18 19 11 24 28 26 23 47 17 20 22 8 19 18 27 11 16 34 34 20 22 7 8 5 6 10 34 18 22 15 34 7 15 6 10 18 5 5 12 19 24 22 23 17 17 14 11 17 5 40 21 18 28 19 15 38 18 8 4 6 21 18 11 7 6 13 16 23 9 18 10 12 20 15 6 3 8 10 8 7 13 3 4 8 14 8 14 16 11 11 21 6 11 7 3 5 5 21 28 26 28 23 22 5 8 16 6 4 11 8 15 3 7 13 4 4 4 6 9 4 14 3 5 18 3	Open. Hide. 62 47 39 44 62 62 62 47 42 51 46 38 46 35 24 38 44 56 38 62 59 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 62 62 62 59 62 62 62 54 62 59 59 62 62 59 59 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 59 62 54 54 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 56 62 62 62 62 62 62 59 62 62 59 59 62 62 62 62 62 62 62 62 54 62 59 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 49 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 54 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 54 58 58 54 58 58 58 58 58 58 54 42 58 58 58 54 58 58 52 58 58 58 58 58 58 58 58 58 58 58 58 58 54 46 58 58 58 58 58 54 54 58 58 58 42 58 58 58 58 54 42 58 58 54 54 58 58 54 58 54 58 58 58 58 58 58 58 58 38 45 32 58 54 54 51 58 58 58 58 58 52 58 48 58 58 51 58 58 48 58 58 58 51 58 54 58 53 58 58 53 51 58 51 51 46 58 58 46 58 58 58 58 50 58 58 51 58 58 47 54 46 53 53 53 53 49 54 58 58 58 40 58 54 51 54 53 49 29 58 39 31 39 27 22 33 32 29 50 44 34 37 50 40 49 43 51 32 39 46 49 40 49 58 49 44 53 53 31 58 54 52 50 50 41 52 50 51 58 51 50 53 45 50 42 42 54 51 39 49 23 29 39 33 51 24 37 25 49 54 50 51 49 53 53 45 54 47 39 34 32 45 49 49 52 51 44 54 54 54 38 30 50 25 33 30 26 33 24 36 54 38 54 51 52 42 40 33 54 54 40 45 35 34 54 47 34 37 47 42 39 53 18 54 41 26 31 42 22 31 32 39 54 31 26 26 16 41 37 19 47 53 52 45 32 47 23 35 47 34 41 17 37 25 31 34 52 51 31 52 29 21 53 42 22 13 35 28 32 53 39 40 33 52 32 29 33 39 43 27 31 26 39 39 21 30 41 32 43 51 31 21 26 31 37 29 30 46 51 31 31 37 25 31 30 37 31 35 39 26 31 31 35 31 51 31 33 30 29 31 38 33 26 22 21 24 24 34 48 30 24 23 32 25 31 21 31 37 31 28 31 30 28 21 34 33 48 48 37 31 26 25 35 30 48 19 12 17 26 21 19 36 26 8 30 24 34 31 31 21 21 31 31 35 33 21 31 33 32 30 14 27 31 18 31 19 32 23 31 31 18 11 31 46 44 26 25 36 25 14 12 31 27 44 25 19 20 13 9 16 27 30 31 25 26 20 23 19 30 21 25 32 19 31 24 28 31 33 20 32 26 28 22 30 15 31 19 9 11 17 25 21 27 19 15 27 14 25 39 33 24 11 7 43 26 7 15 21 25 25 22 15 7 28 11 27 32 21 21 13 10 34 33 21 23 21 19 24 13 17 11 11 30 22 28 34 17 48 13 8 14 4 9 24 27 27 14 30 15 32 15 28 7 16 8 17 16 20 13 18 13 7 26 14 7 30 6 7 20 30 14 28 14 3 4 9 10 13 30 47 20 7 5 3 8 9 11 8 8 9 17 16 24 15 16 14 19 24 24 24 21 20 16 12 4 6 5 9 5 8 11 13 11 5 22 9 9 17 8 5 16 4 3 4 7 8 14 14 7 10 11 5 5 6 10 16 17 22 6 12 8 7 7 11 10 13 8 7 4 3 5 22 12 14 12 10 7 18 8 5 7 5 11 6 15 18 8 15 23 8 4 14 29 16 11 8 5 8 14 1 3 13 5 4 3 4 2 3 3 3 6 5 6 4 4 16 5 4 4 3 2 4 14 13 6 3 6 8 9 23 18 4 3 1 2 3 2 8 15 5 5 5 10 3 1 3 11 10 5 10 6 16 5 5 20 16 2 2 1 7 3 2

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_141560395_141561540
seq2: B6Ng01-340F10.b_47_1188

seq1  GAATTCAATTTAAAGATGAGGAATTAAGATTTACAACAGCTAACTTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAAAGATGAGGAATTAAGATTTACAACAGCTAACTTATCT  50

seq1  GCCCCAGTGATGTACTTCGTAACTGAGATAAAAGTTAAAAAAAAAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTGATGTACTTCGTAACTGAGATAAAAGTTAAAAAAAAAAAGCA  100

seq1  TATATTTTTCTTTCTCTTTTTATTCTTTTTCCCCCTACTACTGAGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTCTTTCTCTTTTTATTCTTTTTCCCCCTACTACTGAGATTTT  150

seq1  TAGCCCAGGGTCTCACACACGCTAGGTAAGTACTCTACCACTGAGTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAGGGTCTCACACACGCTAGGTAAGTACTCTACCACTGAGTCACA  200

seq1  TCATGATCCCCAAAGCATATCTTTCTGTTGCTACAGCTTTCTGCTATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCCCCAAAGCATATCTTTCTGTTGCTACAGCTTTCTGCTATCTG  250

seq1  AGACAGAAAGGAAATATGCTTAAGTCACACACCCCCATTATCCTTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAGGAAATATGCTTAAGTCACACACCCCCATTATCCTTGCTGA  300

seq1  CTTAATTACACCTCCCACAGGCTCCATACACAGCAGCTACTCTAATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTACACCTCCCACAGGCTCCATACACAGCAGCTACTCTAATAACT  350

seq1  GGTATTCACATAGCAACTGATTGAAACTCATTTTCTAGACAGTACTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCACATAGCAACTGATTGAAACTCATTTTCTAGACAGTACTCTAT  400

seq1  AAAGGAAACACAGCACAAATCAGCTCCTTCTAGGACTTTGAAATTTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAACACAGCACAAATCAGCTCCTTCTAGGACTTTGAAATTTCATT  450

seq1  TGTGTTTCTAATGAGTTGAGGGAAAATTACTTGACACATCTAAAAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTAATGAGTTGAGGGAAAATTACTTGACACATCTAAAAATACA  500

seq1  CTGCATCTACATTATTTGACTGGGTAGGTGCTTGTTTGTTGAGTCAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTACATTATTTGACTGGGTAGGTGCTTGTTTGTTGAGTCAGGAT  550

seq1  TCTAATAACAGTTTCTAACTAACACAAGACTTTCATACTTCTATAGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAACAGTTTCTAACTAACACAAGACTTTCATACTTCTATAGTTCT  600

seq1  TCATTTAAAGGTATTGAATCTTTGTGAGCAATGTTGTTGGCAGTTATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAAGGTATTGAATCTTTGTGAGCAATGTTGTTGGCAGTTATTGA  650

seq1  ATAATGCCAGGAGATGAGAAGTTTATTTGTGGTTATATACCTTCATCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCCAGGAGATGAGAAGTTTATTTGTGGTTATATACCTTCATCAGT  700

seq1  GCAAGGTTAAGTGCATTTTTATTAATTCAGATGTCAGTTAGCTATTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTTAAGTGCATTTTTATTAATTCAGATGTCAGTTAGCTATTTACA  750

seq1  CTTGAGAAGTGCTTTAATGCATCAGCCTCGGGAATATCCAATCCAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAGTGCTTTAATGCATCAGCCTCGGGAATATCCAATCCAACAAA  800

seq1  TTGGCTCTTAGGGGAATTCATGGGAAGACAAGCTTATTCTTTTTATATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTTAGGGGAATTCATGGGAAGACAAGCTTATTCTTTTTATATAT  850

seq1  TAACCCCATGTTTGACAACAACTATCAAGTACCATGGTTCTCTTAATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCATGTTTGACAACAACTATCAAGTACCATGGTTCTCTTAATGAT  900

seq1  GAGATTACATCCATTAATTCATTATTAAATTCACTTGCTTTCAGTTTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACATCCATTAATTCATTATTAAATTCACTTGCTTTCAGTTTGGA  950

seq1  ACAGATATCTAATGTTATATTGGATACCATAGAGTTAAATTTCTGCCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATCTAATGTTATATTGGATACCATAGAGTTAAATTTCTGCCATT  1000

seq1  TAAATCATACCTCACTTTACATGCTTTCAATTCAACTTTTAT-ATAAATA  1049
      ||||||||| |||||||||||||||||| |||| |||||||| |||||||
seq2  TAAATCATA-CTCACTTTACATGCTTTC-ATTC-ACTTTTATAATAAATA  1047

seq1  AAGGTAAT-ACTCCTCTATTAAATCATTTCAGAATA-TGAGTCTCTGTTG  1097
      || ||||| ||||||||| ||||||||||||||||| |||||||||| ||
seq2  AA-GTAATAACTCCTCTA-TAAATCATTTCAGAATATTGAGTCTCTG-TG  1094

seq1  AGGTTCATTGCTGCTGCTTGAAAAAA-CTGCTCCCTAAATCACAGGTACC  1146
      | | |||| ||||||||| ||||||| |||||||   |||||||||||||
seq2  AAGGTCATGGCTGCTGCTGGAAAAAACCTGCTCC--TAATCACAGGTACC  1142

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information