BAC Information

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BAC

Clone NameB6Ng01-341A02
ChromosomeX (Build37)
Map Location 97,950,694 - 98,051,573
singlet/doubletdoublet
Overlap geneDlg3, Tex11
Upstream genePcna-ps1, EG620592, Eda, Dgat2l4, Otud6a, Igbp1, LOC668257, Dgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4, Gdpd2
Downstream geneLOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341A02.bB6Ng01-341A02.g
ACCGA124526GA124527
length1,0141,013
definitionB6Ng01-341A02.b B6Ng01-341A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,950,694 - 97,951,376)(98,051,056 - 98,051,573)
sequence
gaattcctctatgacaactgcatcagctcctgtcttcagattcttaccct
gtttgagttcctattgtgaattcctgatgacaaaaagtgatgtgtaagtt
aagccaaataaaccctttcctcctctgcttggttcttggccatggtgtct
catcacatctaagtgtgactctcaaactggcacctttttctttctctagt
agacagagattaatgaaataaactcataacttgtcaaaggccagagaata
agtatctgtgataagccagccacaaatggcacacctacattatctgtctc
cttataggcttagggaccattgcagaagcagagatagaaagattgtgaga
accagagactggggaggaccaggatcaaacagtgtcttctagacattata
gaactgctatacttatgaaattacaacatcagtgtttgccggcaagaggc
ctctacaatatcaagcaagtcaatattctagcatgtttatcaaacccaat
tatgcattctgaagcttggaaagtaactacaatgcaggtgcacattttac
ctactgcgaatcagacctcggctaagattccattggttaccttatgttct
taagtccctctgactgaagagccatgctctcaatgccatttgagatctcc
tgggattaacgtcaactcagagccgatgtaggtactaaaacatctgatta
tttccttttctcagcatacagttactatggcaaaagactgtagattcatt
ttaggagagattggaaaaagattaatagtaaaaagaaaatggctgggcag
tagaggcacaagtctttaattccagcacctgggaggcagagataggcaga
tctctgtgagttcaaggccaggctggtctatagagtgagttccagaatac
cctggtctacacagagaaaccttgtcttggaaaaccacacacacacacac
acacacacacacacacacacacacacacatgattgtatagtaaggtctct
ctcaaaggtatctg
gaattcattcacttctatgaaaaacggcttgatccgttctgagttaattt
ttgtatatggcatcaagtacaaatccaatttcattctttaacatgtaatt
atctacttgtcacagaagagttttatttcaaagactagtcattccctatg
aatagtcttatctcacgtgtggaaagttaatttgtcatagatacatgact
gcattcctggattattggttagatttcattgatgataggtctgtcctaat
ggaagtaccataatatccatctttttgttcctttagtaagctttgtaatc
acaaagttttagctactcaatttttatattctttcaagataattttgagt
attctaggccagttgactttccatataaactttggaatcagtttggaatt
ttggggagaggatgttttgaggcagggtttctttgtgtagccttggctgt
cctatagaccagactggcctgaaactcagagatccacctgcctctgcctc
ccaagtgctgagattagaggcgtgcgccaccaccacctcatggcttttat
ttattttgtaagtattggcttcttaactgtgttaaatcttctaattcatg
aacatgggatattttcccatttcattatatttttatttcaactgtattta
tgtataagatatagcaatacagtattcactgataaaatcaggacagttaa
catttccatctctgtattactttgattagagatttcaggctctactcttc
tgattattaatatatgattgatatataggatagtatgatttatggttacc
tcactgtgccgtagaacactagaacttgctacttttatctaactatattt
gagagggaactttttagatatgaatatacattttttcatacaatactaaa
attcagttgatagttattttaactgcctgtgatatggaaattaaacatat
gatgtagtttcatgcagtacactaaaattcagtgtctgatactcaaatgg
atcttttactaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_97950694_97951376
seq2: B6Ng01-341A02.b_44_726

seq1  GAATTCCTCTATGACAACTGCATCAGCTCCTGTCTTCAGATTCTTACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTATGACAACTGCATCAGCTCCTGTCTTCAGATTCTTACCCT  50

seq1  GTTTGAGTTCCTATTGTGAATTCCTGATGACAAAAAGTGATGTGTAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTTCCTATTGTGAATTCCTGATGACAAAAAGTGATGTGTAAGTT  100

seq1  AAGCCAAATAAACCCTTTCCTCCTCTGCTTGGTTCTTGGCCATGGTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAATAAACCCTTTCCTCCTCTGCTTGGTTCTTGGCCATGGTGTCT  150

seq1  CATCACATCTAAGTGTGACTCTCAAACTGGCACCTTTTTCTTTCTCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATCTAAGTGTGACTCTCAAACTGGCACCTTTTTCTTTCTCTAGT  200

seq1  AGACAGAGATTAATGAAATAAACTCATAACTTGTCAAAGGCCAGAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGATTAATGAAATAAACTCATAACTTGTCAAAGGCCAGAGAATA  250

seq1  AGTATCTGTGATAAGCCAGCCACAAATGGCACACCTACATTATCTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGTGATAAGCCAGCCACAAATGGCACACCTACATTATCTGTCTC  300

seq1  CTTATAGGCTTAGGGACCATTGCAGAAGCAGAGATAGAAAGATTGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGGCTTAGGGACCATTGCAGAAGCAGAGATAGAAAGATTGTGAGA  350

seq1  ACCAGAGACTGGGGAGGACCAGGATCAAACAGTGTCTTCTAGACATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACTGGGGAGGACCAGGATCAAACAGTGTCTTCTAGACATTATA  400

seq1  GAACTGCTATACTTATGAAATTACAACATCAGTGTTTGCCGGCAAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCTATACTTATGAAATTACAACATCAGTGTTTGCCGGCAAGAGGC  450

seq1  CTCTACAATATCAAGCAAGTCAATATTCTAGCATGTTTATCAAACCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAATATCAAGCAAGTCAATATTCTAGCATGTTTATCAAACCCAAT  500

seq1  TATGCATTCTGAAGCTTGGAAAGTAACTACAATGCAGGTGCACATTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTCTGAAGCTTGGAAAGTAACTACAATGCAGGTGCACATTTTAC  550

seq1  CTACTGCGAATCAGACCTCGGCTAAGATTCCATTGGTTACCTTATGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCGAATCAGACCTCGGCTAAGATTCCATTGGTTACCTTATGTTCT  600

seq1  TAAGTCCCTCTGACTGAAGAGCCATGCTCTCAATGCCATTTGAGATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCCTCTGACTGAAGAGCCATGCTCTCAATGCCATTTGAGATCTCC  650

seq1  TGGGATTAACGTCAACTCAGAGCCGATGTAGGT  683
      |||||||||||||||||||||||||||||||||
seq2  TGGGATTAACGTCAACTCAGAGCCGATGTAGGT  683

seq1: chrX_98051056_98051573
seq2: B6Ng01-341A02.g_68_585 (reverse)

seq1  TCTAATCTCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTGAGTTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTGAGTTTCAG  50

seq1  GCCAGTCTGGTCTATAGGACAGCCAAGGCTACACAAAGAAACCCTGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTGGTCTATAGGACAGCCAAGGCTACACAAAGAAACCCTGCCTC  100

seq1  AAAACATCCTCTCCCCAAAATTCCAAACTGATTCCAAAGTTTATATGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCCTCTCCCCAAAATTCCAAACTGATTCCAAAGTTTATATGGAA  150

seq1  AGTCAACTGGCCTAGAATACTCAAAATTATCTTGAAAGAATATAAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTGGCCTAGAATACTCAAAATTATCTTGAAAGAATATAAAAATT  200

seq1  GAGTAGCTAAAACTTTGTGATTACAAAGCTTACTAAAGGAACAAAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCTAAAACTTTGTGATTACAAAGCTTACTAAAGGAACAAAAAGAT  250

seq1  GGATATTATGGTACTTCCATTAGGACAGACCTATCATCAATGAAATCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTATGGTACTTCCATTAGGACAGACCTATCATCAATGAAATCTAA  300

seq1  CCAATAATCCAGGAATGCAGTCATGTATCTATGACAAATTAACTTTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATCCAGGAATGCAGTCATGTATCTATGACAAATTAACTTTCCAC  350

seq1  ACGTGAGATAAGACTATTCATAGGGAATGACTAGTCTTTGAAATAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGATAAGACTATTCATAGGGAATGACTAGTCTTTGAAATAAAACT  400

seq1  CTTCTGTGACAAGTAGATAATTACATGTTAAAGAATGAAATTGGATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGACAAGTAGATAATTACATGTTAAAGAATGAAATTGGATTTGT  450

seq1  ACTTGATGCCATATACAAAAATTAACTCAGAACGGATCAAGCCGTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGCCATATACAAAAATTAACTCAGAACGGATCAAGCCGTTTTTC  500

seq1  ATAGAAGTGAATGAATTC  518
      ||||||||||||||||||
seq2  ATAGAAGTGAATGAATTC  518