BAC Information

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BAC

Clone NameB6Ng01-343H20
ChromosomeX (Build37)
Map Location 159,642,745 - 159,643,941
singlet/doubletsinglet
Overlap genenone
Upstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343H20.bB6Ng01-343H20.g
ACCGA126251GA126252
length1,1811,181
definitionB6Ng01-343H20.b B6Ng01-343H20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatgagaggatgcaaagaggggtagaaagagcaaacatagtgcc
tcaccatagtgtaagtgctcaatgattgtgagctatgaataatcaaactg
gccattattacacacacaaagtcttctctcagtttccctgggtctgtgtg
gttgctagcatgcctcaaagagcagactcttttggtattgtggaatttct
gggtcttggatccttgctaatcttaacagctgatgtggcaggaggccatg
gctgatgattccttgctaatctcgagccctcagaagtgggactgtcatca
gagttaatgctttccaattttctgtcacacctattgggtaaacggcaact
tcgaactcagagagatggcattttatcaggcaagaccaaggcattctaag
aggacgatcacccatatgttctcttcctctgaccttttgggaaaattact
gctgtttgctttcgtcttcattaaatggcagaaaaattcttctacaaaag
caattaatgaaaagctaagtatattaaagccatattttctgtctttatta
cagtcaaaatggcagctctaatgaagccttgaaagtgtgattaggggttt
ccatggcaaccagttgggggatgagtaaggaggccaagttctgggttata
ggtgcttttctttaaacttttggctcactctactgctgagctatatcctc
agcccatatgtgctcacccccactcctctgaaactccagagattcctgtg
tgttatggaacatgaacctctgaatatagcaacctaccattcccttcatt
atcagaatagctgcgaacagagagaaacctgcaaggttgagcctgatgat
gtttcctcacagaaggaggatggggagggtcattaaatcttcatcctaga
tcccagtcaccgtttccttcatgcccctctgaggtgtatgtaattctgct
ccagatgcacagtctctggggaggcaggttctcaatctgtggatcacact
tcttgacaacctctagcttcaaaatacttacagtcatacagtatcacatt
acagtcatgagtagaatgaaattattttatggttggcaacaccacaatat
aagaacctgtataaagggccactgcactagaagcctgagaacacatatgt
cgagtactggacatgatgctgaacttaagtg
gaattccagtgtcagcagtagaagctgtggcttcccagcctagtagaggt
ggtttttctgtcacagcaaaggtaatgtgttggctccaagttgcaagacc
caaactcaatgctcaaaagctagctgtacttctatatgctagcaatgaac
agatcaaagggggaagaaattggaggaagacacatttgtaataggatcaa
aaagaatgcctatgggcaaacttaaggaagcaaaagactgtatactagaa
ttgaaaaaaaaaacactgatagaaaaaatccaagaagctataggtcagta
ggaaaatatcccatgtctatctgttataacagtgttgcttagtcaataac
atttaccttgcaagactaaggatacgagtttgatacccagaaccaatgtt
aaaaataatgtttggtatgatgaccttataacctgtacatcagagatttg
gagacaagaagagccctgggtcttgctagcctcctcagtctaatcttcta
gacaagctccaggccagtggtggaccttgcctcaaaaaacatggtggata
ccataacacaaatgacatggaaagttgatctctgctccccacacacatgt
gcacatacatgcatatgtatcatcatagaaatatacacatctacccacat
agacacaaaaattgtctaaatgcccatactacctagtacaattacaagtt
taatgcaatgccatcaaatattgtatagaaattgtacaatatttgaccta
caagaggccacacacttaaagaaaactgacttttttatattaagtatttt
aaagttaatgtagataaactatcaaacttccagaagttaaataagcatta
aaagcttcatgacattagaatgaataatcatttcttgggtaggacagcaa
atgtgtagacatcaaaaacaaagacaaagggactagatgaatcataaaac
tttgagacactgaaatggcaacctatggtattgggggagatatttgcaaa
tgatagacgcatatgaggtcatatctggtaccatatatactcatatataa
agtgctctactactcaataataaaaatttagtgtcagatctatgtataca
tttctctaagaaatacacaatggctaaaggccattgaaaagacttcatgt
cactatctattaagacaaacgaaccaagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159642745_159643941
seq2: B6Ng01-343H20.b_48_1228

seq1  GAATTCAATGAGAGGATGCAAAGAGGGGTAGAAAGAGCAAACATAGTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAGAGGATGCAAAGAGGGGTAGAAAGAGCAAACATAGTGCC  50

seq1  TCACCATAGTGTAAGTGCTCAATGATTGTGAGCTATGAATAATCAAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATAGTGTAAGTGCTCAATGATTGTGAGCTATGAATAATCAAACTG  100

seq1  GCCATTATTACACACACAAAGTCTTCTCTCAGTTTCCCTGGGTCTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATTACACACACAAAGTCTTCTCTCAGTTTCCCTGGGTCTGTGTG  150

seq1  GTTGCTAGCATGCCTCAAAGAGCAGACTCTTTTGGTATTGTGGAATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAGCATGCCTCAAAGAGCAGACTCTTTTGGTATTGTGGAATTTCT  200

seq1  GGGTCTTGGATCCTTGCTAATCTTAACAGCTGATGTGGCAGGAGGCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGGATCCTTGCTAATCTTAACAGCTGATGTGGCAGGAGGCCATG  250

seq1  GCTGATGATTCCTTGCTAATCTCGAGCCCTCAGAAGTGGGACTGTCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGATTCCTTGCTAATCTCGAGCCCTCAGAAGTGGGACTGTCATCA  300

seq1  GAGTTAATGCTTTCCAATTTTCTGTCACACCTATTGGGTAAACGGCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATGCTTTCCAATTTTCTGTCACACCTATTGGGTAAACGGCAACT  350

seq1  TCGAACTCAGAGAGATGGCATTTTATCAGGCAAGACCAAGGCATTCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAGAGATGGCATTTTATCAGGCAAGACCAAGGCATTCTAAG  400

seq1  AGGACGATCACCCATATGTTCTCTTCCTCTGACCTTTTGGGAAAATTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGATCACCCATATGTTCTCTTCCTCTGACCTTTTGGGAAAATTACT  450

seq1  GCTGTTTGCTTTCGTCTTCATTAAATGGCAGAAAAATTCTTCTACAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGCTTTCGTCTTCATTAAATGGCAGAAAAATTCTTCTACAAAAG  500

seq1  CAATTAATGAAAAGCTAAGTATATTAAAGCCATATTTTCTGTCTTTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATGAAAAGCTAAGTATATTAAAGCCATATTTTCTGTCTTTATTA  550

seq1  CAGTCAAAATGGCAGCTCTAATGAAGCCTTGAAAGTGTGATTAGGGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAAATGGCAGCTCTAATGAAGCCTTGAAAGTGTGATTAGGGGTTT  600

seq1  CCATGGCAACCAGTTGGGGGATGAGTAAGGAGGCCAAGTTCTGGGTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAACCAGTTGGGGGATGAGTAAGGAGGCCAAGTTCTGGGTTATA  650

seq1  GGTGCTTTTCTTTAAACTTTTGGCTCACTCTACTGCTGAGCTATATCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTTTCTTTAAACTTTTGGCTCACTCTACTGCTGAGCTATATCCTC  700

seq1  AGCCCATATGTGCTCACCCCCACTCCTCTGAAACTCCAGAGATTCCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATATGTGCTCACCCCCACTCCTCTGAAACTCCAGAGATTCCTGTG  750

seq1  TGTTATGGAACATGAACCTCTGAATATAGCAACCTACCATTCCCTTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGAACATGAACCTCTGAATATAGCAACCTACCATTCCCTTCATT  800

seq1  ATCAGAATAGCTGCGAACAGAGAGAAACCTGCAAGGTTGAGCCTGATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATAGCTGCGAACAGAGAGAAACCTGCAAGGTTGAGCCTGATGAT  850

seq1  GTTTCCTCACAGAAGGAGGATGGGGAGGGTCATTAAATCTTCATCCTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCACAGAAGGAGGATGGGGAGGGTCATTAAATCTTCATCCTAGA  900

seq1  TCCCAGTCACCGTTTCCTTCATGCCCCTCTGAGGTGTATGTAATTCTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCACCGTTTCCTTCATGCCCCTCTGAGGTGTATGTAATTCTGCT  950

seq1  CCAGATGCACAGTCTCTGGGGAGGCAGGTTCTCAATCTGTGGATCACAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCAGATGCACAGTCTCTGGGGAGGCAGGTTCTCAATCTGTGGATCAC-AC  999

seq1  TTCTTTGACAAACCTCTAGCTTCAAAAATACTTACAAGTCATAACAGTAT  1050
      ||| ||||| ||||||||||||| ||||||||||| |||||| |||||||
seq2  TTC-TTGAC-AACCTCTAGCTTC-AAAATACTTAC-AGTCAT-ACAGTAT  1044

seq1  CACAATTACAGTCATGAAGTAGAAATGAAAATAATTTTATGGTTGGGCAA  1100
      ||| |||||||||||| ||||| |||| |||| ||||||||||| |||||
seq2  CAC-ATTACAGTCATG-AGTAG-AATG-AAATTATTTTATGGTT-GGCAA  1089

seq1  CACCACAATATAAAGAACTGTATTAAAGGGCCACTGCACTAGGAAGGCCG  1150
      |||||||||||||  | ||||| |||||||||||||||||| |||| | |
seq2  CACCACAATATAAGAACCTGTA-TAAAGGGCCACTGCACTA-GAAGCCTG  1137

seq1  AGAAACAC-TATGTTAGAGTACTTGAGTATGAAGGGTGAACTTAAGTG  1197
      || ||||| |||| | ||||||| ||  ||| | | ||||||||||||
seq2  AG-AACACATATG-TCGAGTACTGGA-CATG-ATGCTGAACTTAAGTG  1181