BAC Information

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BAC

Clone NameB6Ng01-344F05
ChromosomeX (Build37)
Map Location 44,179,588 - 44,339,451
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040075, Actrt1, EG245405, LOC665632
Downstream geneEG434775, LOC236775, LOC100040133, LOC100040145, EG624187, Smarca1, LOC676253, Ocrl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344F05.bB6Ng01-344F05.g
ACCGA126845GA126846
length1,1191,197
definitionB6Ng01-344F05.b B6Ng01-344F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,338,317 - 44,339,451)(44,179,588 - 44,180,805)
sequence
gaattcttatcagctctattaaaagtatgaattagtacagcttccataca
caataagaaaatatattttcacatatataaatgaatgctcatggaagtat
tgtttataaggggaaatccataaatagtatgtgtagattaataatatata
cctgtatatgtatattatgaatatcataaaatacatgaaaatggacatac
cataaactataaatataactataggtaaataaagattatatcatttacct
caaaatactacagtatgggtaaatgcaaggaattttgatttaatcatact
taaaatcagagaaaaaaataaaaaaaattacaaactgcattgtttatgaa
ttaattattaattttaggttgtaaattaaatactttttaaaagttagtca
atgaattacaagctatttgtaatagtcaatatctctttgtgaatgaacac
agagaaagatttgaaggtaaatgtataaaaggtgcttcacatatagcaaa
tatacttgtcagttacagaaaacctccttttgagagtatattatagctct
ggtaaacctggcacttgctataaggcataatcttacagaaatttccactg
agccttcttcctcagcctcccaattgttagaattagacgcctaagtcagc
acacatatcttgtcttggaaatttaaaatcactaaatacatatttctata
aaaacactgaagtataacacaatactcaataaaaattcacctacaactga
acaatgttctgagtgaaagattctggagcatttacccttaaatgagttgt
tttatcaaacctcaaatttcacagatctttctggaagatggctgatgtca
aggaaatggcttctagaaacaagagattgaagtctatataagctcaagtg
gattgtgacagcatgctcaagactttcacaagttcaaactgataaattct
atcctagagaagaggaaataaacacaaagtcccaagccttgctagaggct
atatcattgatagctgttgagaagaagaaaatattttccccacgggatgg
tggtgggtatatcatcacatctcagagcaactacatgcctataaggtgtg
ccatcaacagactcatgtt

gaattcttagaggtattcaataaactgaacatataattatacaaggcaga
taaagtactaaaactatggattatttttctgccctttctcagtttaccct
ctgccattttgtatttgccccttactcaaaattcaaaccacttgaaagtg
gctttccattacctcaggcatcttcaataacatatttattcttcttccat
ttactcccaccacacacacacacacacacacacacacacacacacatgaa
gaagactggagagtgtggcccagagcaagggtcagttaggtagccaactg
ggttcagggcagccatgatagaacatagaatttattaataactcaggatt
atctatgggaagaggattagagattagatagttgcccagctattgtggtg
tttaaggtatattaaaatataaaggctgcatgtgtgtctttcatttggga
atataaaacattggggagggtagtgtgaacaattcttccaggatttattt
agataattatttctacacacacacaactttttaaactcttttttatttta
ctattttgctttttaattaaataattgattggttttttttcttatttact
ctgattttcactgttaaattcatcagtacccattccatactaagaactat
agatttattgatggtcataaatgatatagcaatgctattctgaaagctat
tgtaaatttaattttatctttttggcctaccttttccactcctcacctag
tcaattgcttttgatgtattgctgtggaatactttagacattctcagagc
acagtttgacatgtattgaatcatataaatcttccctcttatgcagaaat
cccatatgttatatcccagaaagttagccatccatgtttaaatagtatat
atatactgaaagtatatttactctcttatagcagcctatactaccttaat
atcttgtttaggttgaaatagtgttgaaatttactagacattgcatctta
gttatgtctagaagacactgtctagcagtagatatcttttatcccctttt
cagaattttctggagctatatcaagggttgcagattgtctcttcttgggt
cagtacctcacagagtatatggaatcactgaacagtggaatctctgtata
gtctatctgccatagaagcttctattggtttaattctagcttggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_44338317_44339451
seq2: B6Ng01-344F05.b_49_1167 (reverse)

seq1  AACATGAGTCTGTTGAATTGGCCAACAACTTATAAGCATGTAGTGTGCTC  50
      ||||||||||||||||  ||||  ||| |||||| ||||||||| |||||
seq2  AACATGAGTCTGTTGA--TGGC--ACACCTTATAGGCATGTAGT-TGCTC  45

seq1  TGGAGTGTGGATGATATACCCACCACCATCCCGTTGGGGGAAAAAATAAT  100
      ||   ||| ||||||||||||||||||||||||| |||    ||||||  
seq2  TGAGATGT-GATGATATACCCACCACCATCCCGTGGGG----AAAATA--  88

seq1  TTTTCTTC-TCTCAACAGCTATCAATTGATAATAGCCTCTTAGCAAGGCT  149
      |||||||| |||||||||||||||| |||| |||||||| ||||||||||
seq2  TTTTCTTCTTCTCAACAGCTATCAA-TGAT-ATAGCCTC-TAGCAAGGCT  135

seq1  TGGGACTTTGTGTTTATTTCCTCTTCTCTAGGATAGAATTTTATCAGTTT  199
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  TGGGACTTTGTGTTTATTTCCTCTTCTCTAGGATAGAA-TTTATCAG-TT  183

seq1  TGAACTTGTGAAAGTCTTGAGCATGCTGTCACAATCCACTTGAGCTTATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGTGAAAGTCTTGAGCATGCTGTCACAATCCACTTGAGCTTATA  233

seq1  TAGACTTCAATCTCTTGTTTCTAGAAGCCATTTCCTTGACATCAGCCATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTCAATCTCTTGTTTCTAGAAGCCATTTCCTTGACATCAGCCATC  283

seq1  TTCCAGAAAGATCTGTGAAATTTGAGGTTTGATAAAACAACTCATTTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAAGATCTGTGAAATTTGAGGTTTGATAAAACAACTCATTTAAG  333

seq1  GGTAAATGCTCCAGAATCTTTCACTCAGAACATTGTTCAGTTGTAGGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGCTCCAGAATCTTTCACTCAGAACATTGTTCAGTTGTAGGTGA  383

seq1  ATTTTTATTGAGTATTGTGTTATACTTCAGTGTTTTTATAGAAATATGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTGAGTATTGTGTTATACTTCAGTGTTTTTATAGAAATATGTA  433

seq1  TTTAGTGATTTTAAATTTCCAAGACAAGATATGTGTGCTGACTTAGGCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGATTTTAAATTTCCAAGACAAGATATGTGTGCTGACTTAGGCGT  483

seq1  CTAATTCTAACAATTGGGAGGCTGAGGAAGAAGGCTCAGTGGAAATTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCTAACAATTGGGAGGCTGAGGAAGAAGGCTCAGTGGAAATTTCT  533

seq1  GTAAGATTATGCCTTATAGCAAGTGCCAGGTTTACCAGAGCTATAATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTATGCCTTATAGCAAGTGCCAGGTTTACCAGAGCTATAATATA  583

seq1  CTCTCAAAAGGAGGTTTTCTGTAACTGACAAGTATATTTGCTATATGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAAGGAGGTTTTCTGTAACTGACAAGTATATTTGCTATATGTGA  633

seq1  AGCACCTTTTATACATTTACCTTCAAATCTTTCTCTGTGTTCATTCACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTTTTATACATTTACCTTCAAATCTTTCTCTGTGTTCATTCACAA  683

seq1  AGAGATATTGACTATTACAAATAGCTTGTAATTCATTGACTAACTTTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATATTGACTATTACAAATAGCTTGTAATTCATTGACTAACTTTTAA  733

seq1  AAAGTATTTAATTTACAACCTAAAATTAATAATTAATTCATAAACAATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTAATTTACAACCTAAAATTAATAATTAATTCATAAACAATGC  783

seq1  AGTTTGTAATTTTTTTTATTTTTTTCTCTGATTTTAAGTATGATTAAATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTAATTTTTTTTATTTTTTTCTCTGATTTTAAGTATGATTAAATC  833

seq1  AAAATTCCTTGCATTTACCCATACTGTAGTATTTTGAGGTAAATGATATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCTTGCATTTACCCATACTGTAGTATTTTGAGGTAAATGATATA  883

seq1  ATCTTTATTTACCTATAGTTATATTTATAGTTTATGGTATGTCCATTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTTACCTATAGTTATATTTATAGTTTATGGTATGTCCATTTTC  933

seq1  ATGTATTTTATGATATTCATAATATACATATACAGGTATATATTATTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTATGATATTCATAATATACATATACAGGTATATATTATTAAT  983

seq1  CTACACATACTATTTATGGATTTCCCCTTATAAACAATACTTCCATGAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATACTATTTATGGATTTCCCCTTATAAACAATACTTCCATGAGC  1033

seq1  ATTCATTTATATATGTGAAAATATATTTTCTTATTGTGTATGGAAGCTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTATATATGTGAAAATATATTTTCTTATTGTGTATGGAAGCTGT  1083

seq1  ACTAATTCATACTTTTAATAGAGCTGATAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  ACTAATTCATACTTTTAATAGAGCTGATAAGAATTC  1119


seq1: chrX_44179588_44180805
seq2: B6Ng01-344F05.g_67_1263

seq1  GAATTCTTAGAGGTATTCAATAAACTGAACATATAATTATACAAGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGGTATTCAATAAACTGAACATATAATTATACAAGGCAGA  50

seq1  TAAAGTACTAAAACTATGGATTATTTTTCTGCCCTTTCTCAGTTTACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACTAAAACTATGGATTATTTTTCTGCCCTTTCTCAGTTTACCCT  100

seq1  CTGCCATTTTGTATTTGCCCCTTACTCAAAATTCAAACCACTTGAAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTTTGTATTTGCCCCTTACTCAAAATTCAAACCACTTGAAAGTG  150

seq1  GCTTTCCATTACCTCAGGCATCTTCAATAACATATTTATTCTTCTTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCATTACCTCAGGCATCTTCAATAACATATTTATTCTTCTTCCAT  200

seq1  TTACTCCCACCACACACACACACACACACACACACACACACACACATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCCACCACACACACACACACACACACACACACACACACACATGAA  250

seq1  GAAGACTGGAGAGTGTGGCCCAGAGCAAGGGTCAGTTAGGTAGCCAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTGGAGAGTGTGGCCCAGAGCAAGGGTCAGTTAGGTAGCCAACTG  300

seq1  GGTTCAGGGCAGCCATGATAGAACATAGAATTTATTAATAACTCAGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGGGCAGCCATGATAGAACATAGAATTTATTAATAACTCAGGATT  350

seq1  ATCTATGGGAAGAGGATTAGAGATTAGATAGTTGCCCAGCTATTGTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGGGAAGAGGATTAGAGATTAGATAGTTGCCCAGCTATTGTGGTG  400

seq1  TTTAAGGTATATTAAAATATAAAGGCTGCATGTGTGTCTTTCATTTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTATATTAAAATATAAAGGCTGCATGTGTGTCTTTCATTTGGGA  450

seq1  ATATAAAACATTGGGGAGGGTAGTGTGAACAATTCTTCCAGGATTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAACATTGGGGAGGGTAGTGTGAACAATTCTTCCAGGATTTATTT  500

seq1  AGATAATTATTTCTACACACACACAACTTTTTAAACTCTTTTTTATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTATTTCTACACACACACAACTTTTTAAACTCTTTTTTATTTTA  550

seq1  CTATTTTGCTTTTTAATTAAATAATTGATTGGTTTTTTTTCTTATTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGCTTTTTAATTAAATAATTGATTGGTTTTTTTTCTTATTTACT  600

seq1  CTGATTTTCACTGTTAAATTCATCAGTACCCATTCCATACTAAGAACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTCACTGTTAAATTCATCAGTACCCATTCCATACTAAGAACTAT  650

seq1  AGATTTATTGATGGTCATAAATGATATAGCAATGCTATTCTGAAAGCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTGATGGTCATAAATGATATAGCAATGCTATTCTGAAAGCTAT  700

seq1  TGTAAATTTAATTTTATCTTTTTGGCCTACCTTTTCCACTCCTCACCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTTAATTTTATCTTTTTGGCCTACCTTTTCCACTCCTCACCTAG  750

seq1  TCAATTGCTTTTGATGTATTGCTGTGGAATACTTTAGACATTCTCAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGCTTTTGATGTATTGCTGTGGAATACTTTAGACATTCTCAGAGC  800

seq1  ACAGTTTGACATGTATTGAATCATATAAATCTTCCCTCTTATGCAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGACATGTATTGAATCATATAAATCTTCCCTCTTATGCAGAAAT  850

seq1  CCCATATGTTATATCCCAGAAAGTTAGCCATCCATGTTTAAATAGTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGTTATATCCCAGAAAGTTAGCCATCCATGTTTAAATAGTATAT  900

seq1  ATATACTGAAAGTATATTTACTCTCTTATAGCAGCCTATACTACCTTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTGAAAGTATATTTACTCTCTTATAGCAGCCTATACTACCTTAAT  950

seq1  ATCTTGTTTAGGTTGACATAGTGTTGAAATTTTACTAGACATTGCATCCT  1000
      |||||||||||||||| |||||||||||| |||||||||||||||||| |
seq2  ATCTTGTTTAGGTTGAAATAGTGTTGAAA-TTTACTAGACATTGCATCTT  999

seq1  AGTTATGTCTAGAAGACACTGTCTAGCAGTAGATATCCTTTTATTCCCCT  1050
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  AGTTATGTCTAGAAGACACTGTCTAGCAGTAGATAT-CTTTTA-TCCCCT  1047

seq1  TTTCAGGATTTTCCTTGAGCCTTATATTCAGGGGTTGCAGA-TGTCTC-T  1098
      |||||| ||||| || ||||  |||| ||| |||||||||| |||||| |
seq2  TTTCAGAATTTT-CTGGAGC--TATA-TCAAGGGTTGCAGATTGTCTCTT  1093

seq1  CTTGGGTTCAGTACCTCACAGTCTATTAGTGTATTCACTTTGACCAGTTG  1148
      |||||| ||||||||||||||  |||   || | ||||  ||| ||||  
seq2  CTTGGG-TCAGTACCTCACAGAGTAT--ATGGAATCAC--TGAACAGT--  1136

seq1  TGAATCTCTGTAGTAGTTCTTATCTGCCACAATAAGAAGCTTCTATGGGT  1198
       ||||||||||| ||||   |||||||||     |||||||||||| |||
seq2  GGAATCTCTGTA-TAGT--CTATCTGCCA----TAGAAGCTTCTATTGGT  1179

seq1  TTTAAATTCTAGCTTGGATA  1218
      ||  ||||||||||||||||
seq2  TT--AATTCTAGCTTGGATA  1197


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