BAC Information

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BAC

Clone NameB6Ng01-344P11
ChromosomeX (Build37)
Map Location 159,464,318 - 159,465,266
singlet/doubletsinglet
Overlap geneCtps2
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344P11.bB6Ng01-344P11.g
ACCGA127315GA127316
length9471,206
definitionB6Ng01-344P11.b B6Ng01-344P11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctttctttctgaaaagaaaagaaacaagagggtccggaagagag
tgattcatgcctgtactcccagtacctaggaggtagagttgagtttcggc
tacaagagtctaagagaccttgcttcaaataaaccaaataaagcagggat
gtagttcaacaataaaatacttgcctaccataggcaaggccctgcattcc
atccccagtaccaatccagacacccttccccaaatacacatctattatat
atctattatatatctatatccatctattatatatctattatatatatcta
tatatctatatctatatctatatctatatctatatctatatctatatcta
tatctatatctatatctatatctatatctatatatatggcacaggagtct
tttcaggagataaagacccaaacagagaaaccttattttgttttttcttt
tgttaatcacacaagtcaagaataagaccactaccacaatttaaagccaa
atttggagcaagctttaattaaatgctggccaggaccactctagggttcc
ctggaaatggaaacaagtcacattttgaagggacttaaaaagacaaaatg
cagaattcattacattttctatcaggtcaaatcaggggcaagcatacatc
ctgacatatttccagcctgtgtacctcctgtctacatccaatcaggggca
agcatacatcctgaggtacttccctgtcacatgtgaccaagcacataagc
gtatccagtgcggatggctcagacaaatttgttggaggtagtagtagcct
ccagcatttcagagatatctgttcttgggtgtactggttagaggcatttt
gtttcatggatctcttaggcacagtaattaaaacctaaaatgtaattttg
gctttcacactttctttctccttccttcttccctccttccttccctc
gaattctcccctgaggaataccgagtggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaagcttgtacatccactctggaaatcagtctggcagttcctca
gaaaattggacatactactacgggaggatcccacaatacctctccttgga
gtatatctagaaaatgttccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaatgaatttatgaaattcctaggcaaatg
gatggacctggagggcatcatcctgagtgaggtaacccattcacaaagga
actcgcacaatatgtactcactgataagtggatattagcgcagaaactta
ggatacccaagatataagatacaacttgctaaaggcatgaaattcaagaa
ggaagaccaaagtgtggacactttactccttcctagaaatgggaacaaaa
tacccatagaaggagttacagagacaaaatttggagctgtgacaaaaaga
tggaccatctagtgattgccatatgcagggatccattccataatcagctt
ccaaacgctgacaccatttcacacactagcaaaattttgctgaaaggact
ccagatatagctctctcttgtgagactatgctggggcctagcaaatacag
aagtggatgatcacagtcagcttattggatgggtcatacgggcccccaat
gcaaggagcttagagatattaccaagagctaaagggaactgcaaccctta
taggtggaacacatatgactaaccagtacccccggagctcttgtctctta
gcttcatatgcatcaaaagatggcttagtcgtcattcattgcagaagagg
tccatgacttgcactttagatgccccagttacagtcaaaggggaacgtgg
tgtggatagacgcatatccaaatcatagagtatagaacgtaatgtgagac
gctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159464318_159465266
seq2: B6Ng01-344P11.b_48_994

seq1  GAATTCCTTTCTTTCTGAAAAGAAAAGAAACAAGAGGGTCCGGAAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTTTCTGAAAAGAAAAGAAACAAGAGGGTCCGGAAGAGAG  50

seq1  TGATTCATGCCTGTACTCCCAGTACCTAGGAGGTAGAGTTGAGTTTCGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATGCCTGTACTCCCAGTACCTAGGAGGTAGAGTTGAGTTTCGGC  100

seq1  TACAAGAGTCTAAGAGACCTTGCTTCAAATAAACCAAATAAAGCAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGTCTAAGAGACCTTGCTTCAAATAAACCAAATAAAGCAGGGAT  150

seq1  GTAGTTCAACAATAAAATACTTGCCTACCATAGGCAAGGCCCTGCATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCAACAATAAAATACTTGCCTACCATAGGCAAGGCCCTGCATTCC  200

seq1  ATCCCCAGTACCAATCCAGACACCCTTCCCCAAATACACATCTATTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGTACCAATCCAGACACCCTTCCCCAAATACACATCTATTATAT  250

seq1  ATCTATTATATATCTATATCCATCTATTATATATCTATTATATATATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTATATATCTATATCCATCTATTATATATCTATTATATATATCTA  300

seq1  TATATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCTA  350

seq1  TATCTATATCTATATCTATATCTATATCTATATATATGGCACAGGAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATATCTATATCTATATCTATATCTATATATATGGCACAGGAGTCT  400

seq1  TTTCAGGAGATAAAGACCCAAACAGAGAAACCTTATTTTGTTTTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAGATAAAGACCCAAACAGAGAAACCTTATTTTGTTTTTTCTTT  450

seq1  TGTTAATCACACAAGTCAAGAATAAGACCACTACCACAATTTAAAGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATCACACAAGTCAAGAATAAGACCACTACCACAATTTAAAGCCAA  500

seq1  ATTTGGAGCAAGCTTTAATTAAATGCTGGCCAGGACCACTCTAGGGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGCAAGCTTTAATTAAATGCTGGCCAGGACCACTCTAGGGTTCC  550

seq1  CTGGAAATGGAAACAAGTCACATTTTGAAGGGACTTAAAAAGACAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATGGAAACAAGTCACATTTTGAAGGGACTTAAAAAGACAAAATG  600

seq1  CAGAATTCATTACATTTTCTATCAGGTCAAATCAGGGGCAAGCATACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCATTACATTTTCTATCAGGTCAAATCAGGGGCAAGCATACATC  650

seq1  CTGACATATTTCCAGCCTGTGTACCTCCTGTCTACATCCAATCAGGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATATTTCCAGCCTGTGTACCTCCTGTCTACATCCAATCAGGGGCA  700

seq1  AGCATACATCCTGAGGTACTTCCCTGTCACATGTGACCAAGCACATAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACATCCTGAGGTACTTCCCTGTCACATGTGACCAAGCACATAAGC  750

seq1  GTATCCAGTGCGGATGGCTCAGACAAATTTGTTGGAGGTAGTAGTAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGTGCGGATGGCTCAGACAAATTTGTTGGAGGTAGTAGTAGCCT  800

seq1  CCAGCATTTCAGGAGATATCTGTTCTTGGGTGTACTGGTTAGAGGCATTT  850
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  CCAGCATTTCA-GAGATATCTGTTCTTGGGTGTACTGGTTAGAGGCA-TT  848

seq1  TTGTTTCATGGATCTCTTAGGCACAGTAATTAAAACCTAAAATGTAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATGGATCTCTTAGGCACAGTAATTAAAACCTAAAATGTAATTT  898

seq1  TGGCTTTCACACTTTCTTTCTCCTTCCTTCTTCCCTCCTTCCTTCCCTC  949
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCACACTTTCTTTCTCCTTCCTTCTTCCCTCCTTCCTTCCCTC  947