BAC Information

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BAC

Clone NameB6Ng01-345E20
ChromosomeX (Build37)
Map Location 113,618,688 - 113,722,440
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039277, Cpxcr1
Downstream geneEG624153, LOC100039300, EG665045, LOC100039319, LOC624284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345E20.bB6Ng01-345E20.g
ACCGA127544GA127545
length1,1181,120
definitionB6Ng01-345E20.b B6Ng01-345E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,618,688 - 113,619,801)(113,721,318 - 113,722,440)
sequence
gaattcattgatagtatctttttttcttttcttttatttattattattat
tattattattattattattattatatccttttttagagtccagacttcat
cccctcctggttttcctcaccaccaccctgactgctctccatcccatacc
tcttctcctccctcctacccctcttaagtctctctaggtctaggtacatc
ttttctcactgaggccagaccaggcagtcctctactgtatatgtgttagg
gggcctcataccagctcctgtatgcagcctggttggtggtttaatgtctt
gagagatctcaggttatttgagactgctggtcttcccatggggccgccct
cctcctcagcttcttccagcttttcctaattcaaccaccgtggtccctgg
ggttatttttgggataattttttctccctcttctatagctataattcata
gattccatgttttcatggggttcaaatattcacagattttaaaagttatc
attgatcttgctcaaatgattgcaatcttctgtctttagtgatgatattc
tcttccattattcatatgtattctactgaaaaggatgagaactcccactg
aattgatttaatattttgttttcataatcatttcatttcagtctcagcag
actttctagctctgtattcagtaaaaatttttataacatttcctgttttt
tttttatccatttaaacatttttttttcttttttaactcatttaagagtt
caatcctgtcttctttgactttgtgaatatgtctgttttttggaatgttt
tctttttttatatcttcttaatttcttatttttaattaatttatttttta
tactcaatattttatctcccaatccaccctatgactgttccacatcacat
acctcagccccacacccctgtctccacgtggatatctccacccccacccc
acctgacctctaactccctgagcctccagtcttcttgagagtcatcttct
gaatgacccagactcggaagtctctactgtatgtgtgttgggggcctcat
atcagctggagtatgctgtctgtttggttgttccaacgttttgggaagaa
ttctcagggggttccaga
gaattccaggtcccacaaactagtctcttagcatctataaatataaattt
tcttcctctccctctctcccataaataaataagagaataggggcaaaaat
attctttatattttatgaagtattagctattctcttcaatgctttagtgt
tctaacattagcatacatataaatatataaattaatgttgtctgtaatga
aggtaattattattcccaagatttaataggagatatttcaattttcaaaa
aataaactttattaattgcatagttaattattgcactattactttcaatc
tattttcaatctgattcaatgagtagtgtttacttgtttgttttactttg
atttccagaattcagtgtatggctggagataactttctgagcaatgagat
attctcaaaagccagataaagaatgtaaatcaaagctatgtcatttgttt
ttccttgcaagtggtactaactaaaaataaattatgactgctattcactc
atgaatattccttccaaggtatacataaatactatatatcattcatgtca
tttctttttcctttgcaaaaaaggtttgcacttaccactgcttatatttt
tggtgtgtgccactgtctttattgttgccaattctctaacagcatatttg
taattcaggggtgagagagagagagagagagagagagcgagtgagagaga
gcaataacgatcatgttttaagtgatgacttgtattcattttacatgctt
aatttgaacatcattcattctcttagtgtagaaatagtcaaacagaattt
aagaacttcagcatcatgatttcaaatgagaatttgattgattgggtttt
ctacagtggatataaagagactagactaaaatcattaaataagcaacaga
gatgctatgtttaaatgtctgatctcagtcacctttatacctgaataagg
ttaaatttctataaaagaatttttatattcagctgacatgtgaaaattac
aaaaaaaaatctgggtataatcggtgcataaatacatctcaggtatatat
tggattggttgatttataaggaatctttaaatttctgtgggagttttcta
atgggataaaagtgacgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_113618688_113619801
seq2: B6Ng01-345E20.b_46_1163

seq1  GAATTCATTGATAGTATCTTTTTTTCTTTTCTTTTATTTATTATTATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGATAGTATCTTTTTTTCTTTTCTTTTATTTATTATTATTAT  50

seq1  TATTATTATTATTATTATTATTATATCCTTTTTTAGAGTCCAGACTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTATATCCTTTTTTAGAGTCCAGACTTCAT  100

seq1  CCCCTCCTGGTTTTCCTCACCACCACCCTGACTGCTCTCCATCCCATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTGGTTTTCCTCACCACCACCCTGACTGCTCTCCATCCCATACC  150

seq1  TCTTCTCCTCCCTCCTACCCCTCTTAAGTCTCTCTAGGTCTAGGTACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTCCCTCCTACCCCTCTTAAGTCTCTCTAGGTCTAGGTACATC  200

seq1  TTTTCTCACTGAGGCCAGACCAGGCAGTCCTCTACTGTATATGTGTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCACTGAGGCCAGACCAGGCAGTCCTCTACTGTATATGTGTTAGG  250

seq1  GGGCCTCATACCAGCTCCTGTATGCAGCCTGGTTGGTGGTTTAATGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCATACCAGCTCCTGTATGCAGCCTGGTTGGTGGTTTAATGTCTT  300

seq1  GAGAGATCTCAGGTTATTTGAGACTGCTGGTCTTCCCATGGGGCCGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCTCAGGTTATTTGAGACTGCTGGTCTTCCCATGGGGCCGCCCT  350

seq1  CCTCCTCAGCTTCTTCCAGCTTTTCCTAATTCAACCACCGTGGTCCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAGCTTCTTCCAGCTTTTCCTAATTCAACCACCGTGGTCCCTGG  400

seq1  GGTTATTTTTGGGATAATTTTTTCTCCCTCTTCTATAGCTATAATTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTTTGGGATAATTTTTTCTCCCTCTTCTATAGCTATAATTCATA  450

seq1  GATTCCATGTTTTCATGGGGTTCAAATATTCACAGATTTTAAAAGTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCATGTTTTCATGGGGTTCAAATATTCACAGATTTTAAAAGTTATC  500

seq1  ATTGATCTTGCTCAAATGATTGCAATCTTCTGTCTTTAGTGATGATATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCTTGCTCAAATGATTGCAATCTTCTGTCTTTAGTGATGATATTC  550

seq1  TCTTCCATTATTCATATGTATTCTACTGAAAAGGATGAGAACTCCCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATTATTCATATGTATTCTACTGAAAAGGATGAGAACTCCCACTG  600

seq1  AATTGATTTAATATTTTGTTTTCATAATCATTTCATTTCAGTCTCAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTTAATATTTTGTTTTCATAATCATTTCATTTCAGTCTCAGCAG  650

seq1  ACTTTCTAGCTCTGTATTCAGTAAAAATTTTTATAACATTTCCTGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAGCTCTGTATTCAGTAAAAATTTTTATAACATTTCCTGTTTTT  700

seq1  TTTTTATCCATTTAAACATTTTTTTTTCTTTTTTAACTCATTTAAGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCCATTTAAACATTTTTTTTTCTTTTTTAACTCATTTAAGAGTT  750

seq1  CAATCCTGTCTTCTTTGACTTTGTGAATATGTCTGTTTTTTGGAATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGTCTTCTTTGACTTTGTGAATATGTCTGTTTTTTGGAATGTTT  800

seq1  TCTTTTTTTATATCTTCTTAATTTCTTATTTTTAATTAATTTATTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTATATCTTCTTAATTTCTTATTTTTAATTAATTTATTTTTTA  850

seq1  TACTCAATATTTTATCTCCCAATCCACCCTATGACTGTTCCACATCACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAATATTTTATCTCCCAATCCACCCTATGACTGTTCCACATCACAT  900

seq1  ACCTCAGCCCCACACCCCTGTCTCCACGTGGATATCTCCACCCCCACCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCCCCACACCCCTGTCTCCACGTGGATATCTCCACCCCCACCCC  950

seq1  ACCTGACCTCTAAACTCCCTGAGGCCTCCAGTC-TCTTGAGAGTCATC-T  998
      ||||||||||| |||||||||| |||||||||| |||||||||||||| |
seq2  ACCTGACCTCT-AACTCCCTGA-GCCTCCAGTCTTCTTGAGAGTCATCTT  998

seq1  CTGAATGACCCCAGACTCGGAAGTCCTCTACTGTATGTGTGTTGGGGGCC  1048
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  CTGAATGA-CCCAGACTCGGAAGT-CTCTACTGTATGTGTGTTGGGGGCC  1046

seq1  TCATATCAGCTGGAGTATGCTGTCTGTTTGG-TGGTCCAACGTTT----G  1093
      ||||||||||||||||||||||||||||||| || ||||||||||     
seq2  TCATATCAGCTGGAGTATGCTGTCTGTTTGGTTGTTCCAACGTTTTGGGA  1096

seq1  AGAGATCTCAGGGGG-TCCAGA  1114
      |||  |||||||||| ||||||
seq2  AGAATTCTCAGGGGGTTCCAGA  1118

seq1: chrX_113721318_113722440
seq2: B6Ng01-345E20.g_64_1183 (reverse)

seq1  AATCGTCACTTTTTTATCATTTAGGAAAACT-CCACAGATA-TTAAAGAT  48
      ||||||||||||| |  ||||   ||||||| ||||||| | ||||||||
seq2  AATCGTCACTTTTATCCCATT--AGAAAACTCCCACAGAAATTTAAAGAT  48

seq1  TTCTTATAAATCAACAAAATTCAAATTAATATTACTGGAGATGTATTTAA  98
      | ||||||||||||| ||  || |||  ||| |||  ||||||||||| |
seq2  TCCTTATAAATCAACCAA--TCCAAT--ATA-TACCTGAGATGTATTT-A  92

seq1  TGCA-CGATTATA-CCAGA-TTTTTTTTGTAATTTTCACATGTCAGCTGA  145
      |||| |||||||| ||||| ||||||||||||||||||||||||||||||
seq2  TGCACCGATTATACCCAGATTTTTTTTTGTAATTTTCACATGTCAGCTGA  142

seq1  ATATAAAAATTCTTTTATAGAAATTTAA-CTTATTCAGGTATAAAAGGTG  194
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  ATATAAAAATTCTTTTATAGAAATTTAACCTTATTCAGGTAT-AAAGGTG  191

seq1  ACTGAGATCAGACATTTAAACATAGCATCTCTGTTGCTTATTTAATGATT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATCAGACATTTAAACATAGCATCTCTGTTGCTTATTTAATGATT  241

seq1  TTAGTCTAGTCTCTTTATATCCACTGTAGAAAACCCAATCAATCAAATTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTAGTCTCTTTATATCCACTGTAGAAAACCCAATCAATCAAATTC  291

seq1  TCATTTGAAATCATGATGCTGAAGTTCTTAAATTCTGTTTGACTATTTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAAATCATGATGCTGAAGTTCTTAAATTCTGTTTGACTATTTCT  341

seq1  ACACTAAGAGAATGAATGATGTTCAAATTAAGCATGTAAAATGAATACAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGAGAATGAATGATGTTCAAATTAAGCATGTAAAATGAATACAA  391

seq1  GTCATCACTTAAAACATGATCGTTATTGCTCTCTCTCACTCGCTCTCTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCACTTAAAACATGATCGTTATTGCTCTCTCTCACTCGCTCTCTCT  441

seq1  CTCTCTCTCTCTCTCTCACCCCTGAATTACAAATATGCTGTTAGAGAATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCACCCCTGAATTACAAATATGCTGTTAGAGAATT  491

seq1  GGCAACAATAAAGACAGTGGCACACACCAAAAATATAAGCAGTGGTAAGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAATAAAGACAGTGGCACACACCAAAAATATAAGCAGTGGTAAGT  541

seq1  GCAAACCTTTTTTGCAAAGGAAAAAGAAATGACATGAATGATATATAGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCTTTTTTGCAAAGGAAAAAGAAATGACATGAATGATATATAGTA  591

seq1  TTTATGTATACCTTGGAAGGAATATTCATGAGTGAATAGCAGTCATAATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTATACCTTGGAAGGAATATTCATGAGTGAATAGCAGTCATAATT  641

seq1  TATTTTTAGTTAGTACCACTTGCAAGGAAAAACAAATGACATAGCTTTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGTTAGTACCACTTGCAAGGAAAAACAAATGACATAGCTTTGA  691

seq1  TTTACATTCTTTATCTGGCTTTTGAGAATATCTCATTGCTCAGAAAGTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTCTTTATCTGGCTTTTGAGAATATCTCATTGCTCAGAAAGTTA  741

seq1  TCTCCAGCCATACACTGAATTCTGGAAATCAAAGTAAAACAAACAAGTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCATACACTGAATTCTGGAAATCAAAGTAAAACAAACAAGTAA  791

seq1  ACACTACTCATTGAATCAGATTGAAAATAGATTGAAAGTAATAGTGCAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTCATTGAATCAGATTGAAAATAGATTGAAAGTAATAGTGCAAT  841

seq1  AATTAACTATGCAATTAATAAAGTTTATTTTTTGAAAATTGAAATATCTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTATGCAATTAATAAAGTTTATTTTTTGAAAATTGAAATATCTC  891

seq1  CTATTAAATCTTGGGAATAATAATTACCTTCATTACAGACAACATTAATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAATCTTGGGAATAATAATTACCTTCATTACAGACAACATTAATT  941

seq1  TATATATTTATATGTATGCTAATGTTAGAACACTAAAGCATTGAAGAGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTATATGTATGCTAATGTTAGAACACTAAAGCATTGAAGAGAA  991

seq1  TAGCTAATACTTCATAAAATATAAAGAATATTTTTGCCCCTATTCTCTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAATACTTCATAAAATATAAAGAATATTTTTGCCCCTATTCTCTTA  1041

seq1  TTTATTTATGGGAGAGAGGGAGAGGAAGAAAATTTATATTTATAGATGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATGGGAGAGAGGGAGAGGAAGAAAATTTATATTTATAGATGCT  1091

seq1  AAGAGACTAGTTTGTGGGACCTGGAATTC  1123
      |||||||||||||||||||||||||||||
seq2  AAGAGACTAGTTTGTGGGACCTGGAATTC  1120