BAC Information

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BAC

Clone NameB6Ng01-345F07
ChromosomeX (Build37)
Map Location 98,314,905 - 98,315,983
singlet/doubletsinglet
Overlap genenone
Upstream geneEda, Dgat2l4, Otud6a, Igbp1, LOC668257, Dgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4, Gdpd2, Dlg3, Tex11, LOC668271, LOC100042392, Slc7a3
Downstream geneSnx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345F07.bB6Ng01-345F07.g
ACCGA127560GA127561
length1,1741,134
definitionB6Ng01-345F07.b B6Ng01-345F07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccagcatcaaagtaaatggtgagaagcttgaagcaatcccactaaa
atcagggactagacaaggctgtccactctctccctacctattcaacattg
tacttgaagtcctagccagagcaattagacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatatacgtgaccctaaaaattccaccagagaactcctaagcc
tgataaacagcttcagtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaaggacaaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaataccttggtg
tgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggatcggcaggatcaatatagtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaagggcaatctacaaatttatctggaataacaaaaaacc
taggatagcaaaaactctcctcaaggataaaagaacctctgatggaatca
ccatgcccaacctaaagatgtactacagagcaattgtgataaaaactgca
tgatactggtatagcgacagacaagtagaccaatggaacagaattgaagc
cccagagatgaacccacacacctatggtcacttgatctttgacaagggag
ataaaaccatccagtggaaaaaagacagcattttcaacaaatggtgctgg
cacaactgggctgttatcatgtagaagatttcaaattgatccagtactat
ctccttgtactaagtcaatctaagtgggattaaggattctcacataaaac
agaagaacactgaaactttattagagagacgtaaggaaagctcgagattg
gtacagcaaaaatcttgatgaacagcaatggcctggtcttaggatcgaga
atcaaataaaatgggaacctctac
gaattcagttggtagagtgctgacctaacctcagaagccagatgtggtgg
aacatgcctatagtcccagcatttggaataagaaggcagaaagatagaag
tgcaaggtcatcctctgctacattgtgagattgaggccagccaatctgag
ctacataagactgtctcaaaaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagggaaaggaaaggaaaggaaa
ggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaa
ggaaaggaaaggaaaggaaaagaaaggaaaagaaaagaaaaagcagggac
caggggaaatggaagagaggctagagagatgactcagtggttaagagcac
ctgctgctcttccagagattctgagtttggtggctagcacccatggcagc
aggctcacaaacatctgtaactccagtttcaggggtgttgatgcttctgg
cctctgtgggcacctgccctcaggcgcgcgcgcgcgcgcgcgcgcgcgca
cacacacacacacacacacacacacacacacacacacacacacacacaca
catacacacacacaccacacactcaaatctttttaaaagaaagagaaatg
tgcatctttaagtccattaaataaataattactatcattttgcttttcct
gaatcaactaaattctttttagctaaatttaattgtgtttttttcttttg
taatctacagtctcagaagacaggtctgcagttagtttcctttttctttc
ctccttgttcaatgaattctgatctccaacattctagtggtactactctg
ttctctgttcttatttcacagctacttaacaacccagtaaatctgtattg
cccattgaaaaaaaattgtgtttacaataatctttagaacagttctctat
cttgcctgttctgttttttttttccttgttcttttttatttttttttaaa
gaaaaaaaagataatttgtttgggacgttgttaagcttcaccactctttt
tatttctttagcacttcgggaggcagagaaacggaaggcagggaagaatt
ctttccatgaagtttgaagtcagtcttgatttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_98314905_98315983
seq2: B6Ng01-345F07.g_65_1198 (reverse)

seq1  GCAAATC-AGGCTGGCTTCAAAC-TCATGGAGA----TC-TCCCTG-CTT  42
      ||||||| || ||| |||||||| ||||||| |    || |||||| |||
seq2  GCAAATCAAGACTGACTTCAAACTTCATGGAAAGAATTCTTCCCTGCCTT  50

seq1  C--TGTCTCTGCCTCCTG-AGTGCTAA--GAATAAA------GGTGTGAG  81
      |  | ||||||||||| | ||||||||   ||||||      ||||  ||
seq2  CCGTTTCTCTGCCTCCCGAAGTGCTAAAGAAATAAAAAGAGTGGTG-AAG  99

seq1  CT--ACCACGTCC--AACAA--TAAC--TTTTTTCTTTAAAAAA----AT  119
      ||  || ||||||  |||||  || |  ||||||||||||||||    | 
seq2  CTTAACAACGTCCCAAACAAATTATCTTTTTTTTCTTTAAAAAAAAATAA  149

seq1  AAAAGA--CAGG---AAAAAAACAG-ACA-GCAAGATAGAG-ACTG-TCT  160
      ||||||   |||   |||||||||| ||| ||||||||||| |||| |||
seq2  AAAAGAACAAGGAAAAAAAAAACAGAACAGGCAAGATAGAGAACTGTTCT  199

seq1  -AAGATTA-TGT-AACACA--TTTTTTTCAATGGGCAATACAGATTTACT  205
       ||||||| ||| ||||||  |||||||||||||||||||||||||||||
seq2  AAAGATTATTGTAAACACAATTTTTTTTCAATGGGCAATACAGATTTACT  249

seq1  -GGTTGTTAAGTAGCTGTG-AATAAGAACAGAGAACAGAGTAGTACCACT  253
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGTTGTTAAGTAGCTGTGAAATAAGAACAGAGAACAGAGTAGTACCACT  299

seq1  AGAATGTTGGAGATCAGAATTCATTGAACAAGGAGGAAAGAAAAAGGAAA  303
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTGGAGATCAGAATTCATTGAACAAGGAGGAAAGAAAAAGGAAA  349

seq1  CTAACTGCAGACCTGTCTTCTGAGACTGTAGATTACAAAAG-AAAAAACA  352
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTAACTGCAGACCTGTCTTCTGAGACTGTAGATTACAAAAGAAAAAAACA  399

seq1  CAATTAAATTTAGCTAAAAAGAATTTAGTTGATTCAGGAAAAGCAAAATG  402
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATTTAGCTAAAAAGAATTTAGTTGATTCAGGAAAAGCAAAATG  449

seq1  ATAGTAATTATTTATTTAATGGACTTAAAGATGCACATTTCTCTTTCTTT  452
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATTATTTATTTAATGGACTTAAAGATGCACATTTCTCTTTCTTT  499

seq1  TAAAAAGATTTGAGTGTGTGGTGTGTGTGTGTATGTGTGTGTGTGTGTGT  502
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGATTTGAGTGTGTGGTGTGTGTGTGTATGTGTGTGTGTGTGTGT  549

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGC  552
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGC  599

seq1  GCGCGCGCGCGCCTGAGGGCAGGTGCCCACAGAGGCCAGAAGCATCAACA  602
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCGCGCCTGAGGGCAGGTGCCCACAGAGGCCAGAAGCATCAACA  649

seq1  CCCCTGAAACTGGAGTTACAGATGTTTGTGAGCCTGCTGCCATGGGTGCT  652
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAAACTGGAGTTACAGATGTTTGTGAGCCTGCTGCCATGGGTGCT  699

seq1  AGCCACCAAACTCAGAATCTCTGGAAGAGCAGCAGGTGCTCTTAACCACT  702
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCAAACTCAGAATCTCTGGAAGAGCAGCAGGTGCTCTTAACCACT  749

seq1  GAGTCATCTCTCTAGCCTCTCTTCCATTTCCCCTGGTCCCTGCTTTTTCT  752
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATCTCTCTAGCCTCTCTTCCATTTCCCCTGGTCCCTGCTTTTTCT  799

seq1  TTTCTTTTCCTTTCTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC  802
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCCTTTCTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC  849

seq1  TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC  852
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC  899

seq1  TTTCC--------CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  894
      |||||        |||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  949

seq1  TTTCTTTCTTTCTTTTTTGAGACAGTCTTATGTAGCTCAGATTGGCTGGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTTTTGAGACAGTCTTATGTAGCTCAGATTGGCTGGC  999

seq1  CTCAATCTCACAATGTAGCAGAGGATGACCTTGCACTTCTATCTTTCTGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCTCACAATGTAGCAGAGGATGACCTTGCACTTCTATCTTTCTGC  1049

seq1  CTTCTTATTCCAAATGCTGGGACTATAGGCATGTTCCACCACATCTGGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATTCCAAATGCTGGGACTATAGGCATGTTCCACCACATCTGGCT  1099

seq1  TCTGAGGTTAGGTCAGCACTCTACCAACTGAATTC  1079
      |||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTTAGGTCAGCACTCTACCAACTGAATTC  1134