BAC Information

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BAC

Clone NameB6Ng01-345J02
Chromosome12 (Build37)X (Build37)
Map Location 67,651,113 - 67,652,255107,689,135 - 107,689,303
singlet/doubletsingletsinglet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345J02.bB6Ng01-345J02.g
ACCGA127720GA127721
length1,122412
definitionB6Ng01-345J02.b B6Ng01-345J02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,651,113 - 67,652,255)(107,689,135 - 107,689,303)
sequence
gaattcaatccctcaatagctctctgtttcacttgtttgaaattccattt
ttctgagctgcttagcctatgaccctcggggtcatccctgattcttcttt
tctcataacactaatcagagtctcaaaactaaccagtaaacagatttaac
tttaataatatgactttacaagcagaatagttccttatggaagaaggaat
ataatttttttaaatttcttttaattgcatattttatttgtttacatttc
aaatgttcttccctttcctggtttcccctctgcaaaccccctatcccatc
cccacttaccctgcttctgtgagggtgctcccccagccacccacccactt
ctgcctcactgccctagcattcctctaagctggggcatcaagccttcaca
ggaccaaggccctcccctccctttgatgccagataaggcccattcagttc
ctccagtccttcccctaactcctccattggggtccctgtgctcagtctga
tggttggctacgatcatctgcatctgtatcgttcaggatctggcagagcc
tctcaggagactgctgtatcaggctcaacagtgagtatgtacaaggtccg
atatgtctacagtcacactgagtcactttctgctttcaggaaaggcctat
gccccagagttctactatgacacctacaaccccgtgtggcagaaccgaca
ccgagtgtattcttacagtctacagtggacacaaatgaaccctgatgcag
ttgatcgaattgttgcataccgcttgggtattcggcaggtaagaaatttt
gtgcctactttgtttttgttttattgtagtcccttcttcagactttgttg
ctgtaatttttattaatgtattaaatgcattgtagaatttatttttaatt
ttttaatctctaaattttattttatgacatattgcttttcaatactactc
agaatattactgatattatctatttatatactggaataacttattgagtt
atttcctctcagcttctgagggctacatcttagatgtgctcagagatcat
atgtgcactgctgcaagaattagatgtcctgtgccatacctattacttta
tgatcatacttcctttatctag

tttgtatagttctataccccacttttgattgggtcatttgtgataaccag
aagctggaaacaacccagatgtcccacaacagaagaatggatacagaaaa
tgtggttcatttacacaatggaatactactcagatattaaaaatgaggac
atcatgagttttgcaggcaaatggatggaactagaaaatatcctgagtga
gataactcagacccaaaaggatacgcactctacatactcactaataagtg
gctagtacccaaaaaaggtacagaattcccaggatacagtccacagaact
caagaaggctaacaagctgaagggcccaagtaaggatgtctcaatcccac
ttgggagggagaaaaaagcaatcacaggaagccgggggggggggggcagg
gggcgttggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_67651113_67652255
seq2: B6Ng01-345J02.b_48_1169 (reverse)

seq1  CTAGATAAAGAGAGTAATGGATTCATAAAGTAATA-GTAT-GCACAAGAA  48
      ||||||||||  ||| |||   ||||||||||||| |||| |||| || |
seq2  CTAGATAAAGGAAGT-ATG--ATCATAAAGTAATAGGTATGGCAC-AGGA  46

seq1  CATCTTAAATTCCTTTTGCAGCAGTGCACAATATGATCTCTTGAGCACAT  98
      |||||  |||||   |||||||||||||| |||||||||| |||||||||
seq2  CATCT--AATTC---TTGCAGCAGTGCAC-ATATGATCTC-TGAGCACAT  89

seq1  CTAAAGATGTAGCCCTTCAGAAGGCTGAGAGGAAATAACTTCAATAAGTT  148
      || |||||||||||| |||||| |||||||||||||||| |||||||| |
seq2  CT-AAGATGTAGCCC-TCAGAA-GCTGAGAGGAAATAAC-TCAATAAG-T  134

seq1  TATTCCAGTAATATAAAATAGATTAATTATCAGTAAATAATTCTGAGTAG  198
      ||||||||| |||| ||||||||  | |||||||||   |||||||||||
seq2  TATTCCAGT-ATAT-AAATAGAT--AATATCAGTAA--TATTCTGAGTAG  178

seq1  TATTGAAAAGCAATATTGTCATAAAATAAAATTTAGAGATTAAAAAATTA  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTGAAAAGCAATA-TGTCATAAAATAAAATTTAGAGATTAAAAAATTA  227

seq1  AAAATAAATTCTACAATGCATTTAATACATTAATAAAAATTACAGCAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATTCTACAATGCATTTAATACATTAATAAAAATTACAGCAACA  277

seq1  AAGTCTGAAGAAGGGACTACAATAAAACAAAAACAAAGTAGGCACAAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGAAGAAGGGACTACAATAAAACAAAAACAAAGTAGGCACAAAAT  327

seq1  TTCTTACCTGCCGAATACCCAAGCGGTATGCAACAATTCGATCAACTGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCTGCCGAATACCCAAGCGGTATGCAACAATTCGATCAACTGCA  377

seq1  TCAGGGTTCATTTGTGTCCACTGTAGACTGTAAGAATACACTCGGTGTCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTCATTTGTGTCCACTGTAGACTGTAAGAATACACTCGGTGTCG  427

seq1  GTTCTGCCACACGGGGTTGTAGGTGTCATAGTAGAACTCTGGGGCATAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCCACACGGGGTTGTAGGTGTCATAGTAGAACTCTGGGGCATAGG  477

seq1  CCTTTCCTGAAAGCAGAAAGTGACTCAGTGTGACTGTAGACATATCGGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTGAAAGCAGAAAGTGACTCAGTGTGACTGTAGACATATCGGAC  527

seq1  CTTGTACATACTCACTGTTGAGCCTGATACAGCAGTCTCCTGAGAGGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACATACTCACTGTTGAGCCTGATACAGCAGTCTCCTGAGAGGCTC  577

seq1  TGCCAGATCCTGAACGATACAGATGCAGATGATCGTAGCCAACCATCAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGATCCTGAACGATACAGATGCAGATGATCGTAGCCAACCATCAGA  627

seq1  CTGAGCACAGGGACCCCAATGGAGGAGTTAGGGGAAGGACTGGAGGAACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACAGGGACCCCAATGGAGGAGTTAGGGGAAGGACTGGAGGAACT  677

seq1  GAATGGGCCTTATCTGGCATCAAAGGGAGGGGAGGGCCTTGGTCCTGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGCCTTATCTGGCATCAAAGGGAGGGGAGGGCCTTGGTCCTGTGA  727

seq1  AGGCTTGATGCCCCAGCTTAGAGGAATGCTAGGGCAGTGAGGCAGAAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGATGCCCCAGCTTAGAGGAATGCTAGGGCAGTGAGGCAGAAGTG  777

seq1  GGTGGGTGGCTGGGGGAGCACCCTCACAGAAGCAGGGTAAGTGGGGATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGGCTGGGGGAGCACCCTCACAGAAGCAGGGTAAGTGGGGATGG  827

seq1  GATAGGGGGTTTGCAGAGGGGAAACCAGGAAAGGGAAGAACATTTGAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGGGTTTGCAGAGGGGAAACCAGGAAAGGGAAGAACATTTGAAAT  877

seq1  GTAAACAAATAAAATATGCAATTAAAAGAAATTTAAAAAAATTATATTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAATAAAATATGCAATTAAAAGAAATTTAAAAAAATTATATTCC  927

seq1  TTCTTCCATAAGGAACTATTCTGCTTGTAAAGTCATATTATTAAAGTTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCATAAGGAACTATTCTGCTTGTAAAGTCATATTATTAAAGTTAA  977

seq1  ATCTGTTTACTGGTTAGTTTTGAGACTCTGATTAGTGTTATGAGAAAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTACTGGTTAGTTTTGAGACTCTGATTAGTGTTATGAGAAAAGA  1027

seq1  AGAATCAGGGATGACCCCGAGGGTCATAGGCTAAGCAGCTCAGAAAAATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGGGATGACCCCGAGGGTCATAGGCTAAGCAGCTCAGAAAAATG  1077

seq1  GAATTTCAAACAAGTGAAACAGAGAGCTATTGAGGGATTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAAACAAGTGAAACAGAGAGCTATTGAGGGATTGAATTC  1122


seq1: chrX_107689135_107689303
seq2: B6Ng01-345J02.g_104_211 (reverse)

seq1  TTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TATCCATTCCTCTCTTAATAGCTGGCTAGTATTCCTTTTTGCAAATGAAT  100
                  | |||||| |||  ||||||||| || || ||||||| 
seq2  -----------TTTTTAATATCTGAGTAGTATTCCATTGTGTAAATGAAC  39

seq1  CACATTCTCTGTATCCATTTTTCTGTCGTGGGACATCTAGGTTGTTTCCA  150
      |||||| |||||||||||| |||||| ||||||||||| |||||||||||
seq2  CACATTTTCTGTATCCATTCTTCTGTTGTGGGACATCTGGGTTGTTTCCA  89

seq1  GCTTCTGGCTATCACAAAT  169
      |||||||| ||||||||||
seq2  GCTTCTGGTTATCACAAAT  108


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