BAC Information

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BAC

Clone NameB6Ng01-345M21
ChromosomeX (Build37)4 (Build37)
Map Location 158,937,574 - 158,938,690133,499,366 - 133,499,521
singlet/doubletsingletsinglet
Overlap geneReps2
Upstream geneRai2, Gm47, Nhs
Downstream geneLOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345M21.bB6Ng01-345M21.g
ACCGA127883GA127884
length1,113966
definitionB6Ng01-345M21.b B6Ng01-345M21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(158,937,574 - 158,938,690)(133,499,366 - 133,499,521)
sequence
gaattctttgtttagctctgtaccccatttttaatggggttatttgaatt
tctggagttcagcttcttgagctctttgtatatattggatattagtcccc
tatcagatttaggattggtaaaaattctttcccaatctgttagtggcctt
tttgtcttattgacagtatcttttgccctacagaagctttgcaattttat
gaggtcccatttgtcaattcttgatcttacagcacaggccattgctatta
tctttaagctactctctctccataccttgacagcacatactgctttctat
caccctgtgggccccatcttttaaagaaggctttgttttttccacttaag
tcaatatcttgcttcatctcaaaccatcttcccttctttaccataccttt
tcttattcctgtttttataaacagagcagcccagatagacttgtgaaagg
agagactggagggataaggatctagcagagtggcagatcatttcagctgc
ccatggcctgttgacattctcacatgccttagagaagagaagcagagttc
ttaggaaaggtgaaaaaaatagtaaatggtacttgtgattcatcaacaca
agctgagtgaaccttgtgagcaaatgattcacaaaagatgaaataatggc
caataatagtgtaggggaaatgcttgaacttacaaggaatcgggaaagtt
tttgcctacattcaaaaggatgaagactgatgcctgagggtgtaggggac
acactgagacaatgctagaaataaagcaagctcacgggctttctgcagca
gtctagcaatatacatctggaccataaacatctatagcctttgatcccaa
aacccctccatttaggatttaacacaagaaaataattggacgagaaaagg
taagtgtagatttgaaatcactgacactttgggccttggttaatcctaag
agcaagtgggattgtggggagaaagagtgtgttgtctgttggagaaattt
ttcagcaatgcataatcactatgtacatcatatcatgcatcaattaaaag
aatgatacattttttttcactggtgaaaggtaaatgttaattggaatgcc
agacatggacagg
gaattcatttggcgttttggcagtctccttattactgcttcaatcttgtt
gctttttaaaaataaatgtaaattgtccacaatctttatttaattttggc
aagtcatatgttgtttaggaatttacctatttcttctagattttttgaat
atgttttcaaaatattccctaataattgtttagagtttatcattttcttt
tttttaaagaatttatttattatatgtaagtacattgtagctgtctttag
acaccagaagagggcgtcatatgttactacggatggttatgagccaccat
gtggttgctgggatttgaactcaggacttcctgaagagcagttagtgctt
ttacctactgagccatttcaccagcccccattttcttcttctttttttta
tcttaacttttattatcttgttttctctcttttttcactttgactaattt
agccagggtttagctaatttcattcactggttcaaagaatcaactctgtc
attgatatatttggttgattatatggatatttgtaaatttagtctccatt
taattaatttcttccctaatttttattatttcatgctgtacactactttt
gaattcccattgttatttttattcttggacattgagatgcaccattagat
tatttactcgagatatttctttggtttttaactttctttttttatggtaa
gcaccaatagctcattgttcctcagctctctcccaaaggttccagaaaac
tgcgcttccattttcctctgatctgaggcattttaagatttctttccctg
actcactcagcaatccatttaagagtgtagtttttagtctccgtgcattt
gctgcgctagtttattgcaccacaattgaatgcaatacaagaggattttt
caagtcttttgtgtttgtcccaaattgattgtggctgtatatgtgtgtac
atgttgtgtgcatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158937574_158938690
seq2: B6Ng01-345M21.b_46_1158

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTATTTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTATTTGAATT  50

seq1  TCTGGAGTTCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTTCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCC  100

seq1  TATCAGATTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTAGTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTAGTGGCCTT  150

seq1  TTTGTCTTATTGACAGTATCTTTTGCCCTACAGAAGCTTTGCAATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTGACAGTATCTTTTGCCCTACAGAAGCTTTGCAATTTTAT  200

seq1  GAGGTCCCATTTGTCAATTCTTGATCTTACAGCACAGGCCATTGCTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTCAATTCTTGATCTTACAGCACAGGCCATTGCTATTA  250

seq1  TCTTTAAGCTACTCTCTCTCCATACCTTGACAGCACATACTGCTTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGCTACTCTCTCTCCATACCTTGACAGCACATACTGCTTTCTAT  300

seq1  CACCCTGTGGGCCCCATCTTTTAAAGAAGGCTTTGTTTTTTCCACTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTGGGCCCCATCTTTTAAAGAAGGCTTTGTTTTTTCCACTTAAG  350

seq1  TCAATATCTTGCTTCATCTCAAACCATCTTCCCTTCTTTACCATACCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATCTTGCTTCATCTCAAACCATCTTCCCTTCTTTACCATACCTTT  400

seq1  TCTTATTCCTGTTTTTATAAACAGAGCAGCCCAGATAGACTTGTGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCCTGTTTTTATAAACAGAGCAGCCCAGATAGACTTGTGAAAGG  450

seq1  AGAGACTGGAGGGATAAGGATCTAGCAGAGTGGCAGATCATTTCAGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGGAGGGATAAGGATCTAGCAGAGTGGCAGATCATTTCAGCTGC  500

seq1  CCATGGCCTGTTGACATTCTCACATGCCTTAGAGAAGAGAAGCAGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCTGTTGACATTCTCACATGCCTTAGAGAAGAGAAGCAGAGTTC  550

seq1  TTAGGAAAGGTGAAAAAAATAGTAAATGGTACTTGTGATTCATCAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAGGTGAAAAAAATAGTAAATGGTACTTGTGATTCATCAACACA  600

seq1  AGCTGAGTGAACCTTGTGAGCAAATGATTCACAAAAGATGAAATAATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTGAACCTTGTGAGCAAATGATTCACAAAAGATGAAATAATGGC  650

seq1  CAATAATAGTGTAGGGGAAATGCTTGAACTTACAAGGAATCGGGAAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATAGTGTAGGGGAAATGCTTGAACTTACAAGGAATCGGGAAAGTT  700

seq1  TTTGCCTACATTCAAAAGGATGAAGACTGATGCCTGAGGGTGTAGGGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTACATTCAAAAGGATGAAGACTGATGCCTGAGGGTGTAGGGGAC  750

seq1  ACACTGAGACAATGCTAGAAATAAAGCAAGCTCACGGGCTTTCTGCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGACAATGCTAGAAATAAAGCAAGCTCACGGGCTTTCTGCAGCA  800

seq1  GTCTAGCAATATACATCTGGACCATAAACATCTATAGCCTTTGATCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCAATATACATCTGGACCATAAACATCTATAGCCTTTGATCCCAA  850

seq1  AACCCCTCCATTTAGGATTTAACACAAGAAAATAATTGGACGAGAAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTCCATTTAGGATTTAACACAAGAAAATAATTGGACGAGAAAAGG  900

seq1  TAAGTGTAGATTTGAAATCACTGACAACTTTGGCCTTGGTTAATCCTAAG  950
      ||||||||||||||||||||||||||  || |||||||||||||||||||
seq2  TAAGTGTAGATTTGAAATCACTGACACTTTGGGCCTTGGTTAATCCTAAG  950

seq1  AGCAAAGTGGGATTGTGGGGAGGAAAAGAAGGTGTGTGTCTGTTGGGAGA  1000
      ||| ||||||||||||||||||  |||||  |||| |||||||| |||||
seq2  AGC-AAGTGGGATTGTGGGGAG--AAAGAGTGTGT-TGTCTGTT-GGAGA  995

seq1  AATTTTTCCAGCAATGCATAATCAACTATTGTACATCCATATCATGCATC  1050
      ||||||| ||||||||||||||| |||| ||||||| |||||||||||||
seq2  AATTTTT-CAGCAATGCATAATC-ACTA-TGTACAT-CATATCATGCATC  1041

seq1  CATTAAAAAGAATGATACATTTTTTTTCACT-GTGAAAAAGGGAAAAAGG  1099
       ||| |||||||||||||||||||||||||| ||||||    |  ||| |
seq2  AATT-AAAAGAATGATACATTTTTTTTCACTGGTGAAA----GGTAAATG  1086

seq1  CTAATTGGA---------AAGGACAGG  1117
       ||||||||         | |||||||
seq2  TTAATTGGAATGCCAGACATGGACAGG  1113

seq1: chr4_133499366_133499521
seq2: B6Ng01-345M21.g_254_410 (reverse)

seq1  ACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGC  50
      |||||||||| | | |||| ||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCAGGAAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGC  50

seq1  TCACAACCATC----------TATAAGG---------AGTGTCTGTAGAC  81
      ||| |||||||          ||| | |          ||||||  ||||
seq2  TCATAACCATCCGTAGTAACATATGACGCCCTCTTCTGGTGTCTAAAGAC  100

seq1  AGCTACAGTGTACTTACATATAATAAATAAA-TCTTTAAACCAAAAAAAA  130
      ||||||| ||||||||||||||||||||||| |||||             
seq2  AGCTACAATGTACTTACATATAATAAATAAATTCTTT-------------  137

seq1  AAAAAAAAAAAAAGAAAATGAATAAA  156
           ||||||||||||||| |||||
seq2  -----AAAAAAAAGAAAATG-ATAAA  157