MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-347K05
Chromosome	X (Build37)
Map Location	40,026,460 - 40,027,673
singlet/doublet	singlet
Overlap gene	Odz1
Upstream gene	Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a
Downstream gene	Gm362, LOC100039977
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gria3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53623 MGI:95810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039802 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039802
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC676077 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:676077
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Thoc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:331401 MGI:2442413
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665488 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665488
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	EG333830 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:333830 MGI:3646830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins

name	LOC100039838 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Birc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11798 MGI:107572
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stag2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20843 MGI:1098583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100039899 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039899
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein

name	Sh2d1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20400 MGI:1328352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Odz1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23963 MGI:1345185
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm362 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236774 MGI:2685208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC100039977 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Gria3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781716 GeneID:53623 MGI:95810
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutamate receptor, ionotropic, AMPA3 (alpha 3) transcript_id : NM_016886.2

name	Thoc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125656162 GeneID:331401 MGI:2442413
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : THO complex 2 transcript_id : NM_001033422.1

name	EG333830 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407343 GeneID:333830 MGI:3646830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins product : predicted gene, EG333830 transcript_id : XM_912534.2

name	Birc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753087 GeneID:11798 MGI:107572
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : baculoviral IAP repeat-containing 4 transcript_id : NM_009688.1

name	Stag2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118150673 GeneID:20843 MGI:1098583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : stromal antigen 2 transcript_id : NM_001077712.1

name	Stag2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118150671 GeneID:20843 MGI:1098583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : stromal antigen 2 transcript_id : NM_021465.3

name	LOC100039899 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271525 GeneID:100039899
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : hypothetical protein LOC100039899 transcript_id : XM_001473737.1

name	Sh2d1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363688 GeneID:20400 MGI:1328352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SH2 domain protein 1A transcript_id : NM_011364.3

name	Odz1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130019 GeneID:23963 MGI:1345185
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : odd Oz/ten-m homolog 1 (Drosophila) transcript_id : NM_011855.3

name	Gm362 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38086140 GeneID:236774 MGI:2685208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : gene model 362, (NCBI) transcript_id : XM_141720.2

name	LOC100039977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271527 GeneID:100039977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039977 transcript_id : XM_001473881.1

name	Thoc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125656163 GeneID:331401 MGI:2442413
definition	codon_start : 1 note : transcription/export complex subunit 2 product : THO complex subunit 2 protein_id : NP_001028594.1

name	EG333830 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407344 GeneID:333830 MGI:3646830
definition	codon_start : 1 product : similar to ribosomal protein S7 protein_id : XP_917627.2

name	Birc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753088 CCDS:CCDS30098.1 GeneID:11798 MGI:107572
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IDA]; GO:0006915 - apoptosis [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IDA]; GO:0043154 - negative regulation of caspase activity [Evidence IDA] codon_start : 1 exception : mismatches in translation note : apoptosis inhibitor 3; X-linked inhibitor of apoptosis product : baculoviral IAP repeat-containing 4 protein_id : NP_033818.1

name	Stag2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118150674 GeneID:20843 MGI:1098583
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 note : nuclear protein SA2 product : stromal antigen 2 protein_id : NP_001071180.1

name	Stag2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118150672 GeneID:20843 MGI:1098583
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 note : nuclear protein SA2 product : stromal antigen 2 protein_id : NP_067440.3

name	LOC100039899 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271526 GeneID:100039899
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473787.1

name	Sh2d1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755494 CCDS:CCDS30099.1 GeneID:20400 MGI:1328352
definition	GO_process : GO:0006959 - humoral immune response [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 note : Duncan disease homolog product : SH2 domain protein 1A protein_id : NP_035494.1

name	Odz1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657413 GeneID:23963 MGI:1345185
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IDA] codon_start : 1 product : odd Oz/ten-m homolog 1 protein_id : NP_035985.2

name	Gm362 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38086141 GeneID:236774 MGI:2685208
definition	codon_start : 1 product : hypothetical protein protein_id : XP_141720.2

name	LOC100039977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271528 GeneID:100039977
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473931.1

name	LOC100039802 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039802
definition	number : 3 pseudo : _no_value

name	LOC100039802 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039802
definition	number : 2 pseudo : _no_value

name	LOC100039802 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039802
definition	number : 1 pseudo : _no_value

name	LOC676077 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676077
definition	number : 4 pseudo : _no_value

name	LOC676077 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676077
definition	number : 3 pseudo : _no_value

name	LOC676077 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676077
definition	number : 2 pseudo : _no_value

name	LOC676077 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676077
definition	number : 1 pseudo : _no_value

name	LOC665488 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665488
definition	number : 1 pseudo : _no_value

name	LOC665488 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665488
definition	number : 2 pseudo : _no_value

name	LOC100039838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039838
definition	number : 1 pseudo : _no_value

name	LOC100039838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039838
definition	number : 2 pseudo : _no_value

name	LOC100039838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039838
definition	number : 3 pseudo : _no_value

clone name	MSMg01-526A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388M04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-484H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302B15
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-347K05.b	B6Ng01-347K05.g
ACC	GA129181	GA129182
length	1,242	1,188
definition	B6Ng01-347K05.b	B6Ng01-347K05.g
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctttgttcagttctgagccccattttttaagggggttatttgatt ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca ttaggtcccatttgtcaattctcgatcttacagtacaagccattgctgtt ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt tatccttgagaagagtttttgctatcctcggttttttgttattccagatg aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt aatggggattgcattgaatctgtagattgcttttggcaagatagccattt ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata cagatctttcacttccttcgttagagtcacgccgagatattttatattat ttgtggctattgagaaggtgttgtttccctaatttctttctcagcctgtt attctttgtgtagagaaggccattgacttgtttgagttaattttatatcc agctacttcaccgagctgtttatcaggtttaggagttctctgttggattt tagggtcacttatatataccttcatatcactctgcaaagtgaatttgact ccttttcatgattcctgaattccgtgtggcaagctggctaactcagacta tgtgaacgtagggaaaatgggcgaagcttggtgtctagatcg	gaattcatgagtggaaagaaatgaaagattattatctctgctagctttcc tgacaggaagtcactggggcatagaaattgggtgcttgttaaggtgggtc aagaatgacagcagaaaaagacatgcagcgtccatctgagttggaattcc tgctcatcacaggcttttaggctctttctgaacctcagactcttcctctg gatattggagatcttattaattgtgctatgcctaccaagcaggaatgcta tatggattaaaatgaaataatgtatgtgaaagtaccttgcaaattgtaaa gcactccttatttattattaaaatattcagtgtgtcctgttctcatggct gcccagctagtttaggttttactgaaggaaaatttatgaacactaaagca tcattctcaggagtgttttgtgagcacaaagcagctatagcttaacacct attactattaatgttcccctgtttctctctaacacaatttagacagactc ctatgcgttgtgaaccttcaggaagtctagttctcacagaaacaccactc tttcttgccaaactactgtactaaataaatatgcaatcattgttgccaat aaccttgaagaaaaataggattgtttatggcagtactactaaaggcggat ggctgattttctgaacttccaggactctaaactgcagcaatttaatttaa ttaaaatgaagaccaggcagaatgcattattatacattgataatatatgc agacacaggcggacatagggaattattttgacaaaattcacataatggat gcagatcagaggccctgaacaagctagtttgtcaaatttaatatgccatc tctagaattttaacagcactatgaacctaacagtagtgatttttatattg ttgtgtaagccatagagttgggaaagaaatgaaataaaaatacaatgatt tctagacagtataggtgcttcagaacaaggaaatgaagaactatggtcaa accctttcaatgatcatgggcagttttcagcaagcagtcttgtctatgaa tcagaccaaaagtctttaagctgatgactagtgatgctgctttaagctga tgactagtgattgctgcttaagctgatgactatgatgctgctttgtatga gattagggtgtactccttccattgaacaatagtgcttg
quality values	Open. Hide. 62 47 25 33 62 62 47 62 62 38 62 62 31 16 47 47 62 62 47 47 62 62 62 62 62 62 44 62 51 51 45 28 38 39 20 28 43 32 62 54 59 62 62 59 62 62 42 54 59 62 62 62 62 62 59 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 54 62 59 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 54 62 59 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 54 49 62 62 54 54 54 54 62 62 62 62 62 54 49 54 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 56 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 45 58 58 58 54 58 54 58 58 58 58 58 58 58 58 58 58 54 58 58 52 58 58 58 58 58 58 58 58 58 58 58 52 58 54 54 54 58 58 58 49 58 58 54 54 41 58 50 58 54 54 58 47 50 54 58 58 52 58 42 30 54 58 49 52 51 49 50 51 49 24 58 50 51 53 53 58 58 53 42 53 58 58 51 58 58 58 34 58 58 50 58 40 46 58 58 58 58 49 41 39 50 52 58 58 54 58 51 44 40 58 58 58 58 58 51 31 50 42 41 41 50 49 39 46 58 50 46 49 41 39 58 58 43 41 39 58 41 42 51 58 41 51 51 51 52 50 52 39 50 51 40 51 50 45 50 53 41 50 51 21 49 22 18 58 52 53 38 52 53 53 40 47 37 19 54 54 37 32 39 37 54 49 49 40 35 23 54 47 32 32 42 54 52 45 34 33 45 41 53 37 42 31 40 37 36 46 33 54 54 54 42 47 52 28 42 45 40 39 32 53 33 33 30 33 31 54 54 54 40 29 43 28 51 37 54 12 40 46 40 25 32 53 40 45 29 39 26 32 31 32 32 28 32 45 53 29 32 24 31 35 49 47 39 32 29 13 32 36 51 51 30 35 30 37 45 31 42 39 30 31 38 18 30 18 32 29 46 31 30 47 31 31 31 31 51 30 31 26 51 31 36 37 37 31 12 28 48 10 31 16 26 29 31 27 33 28 36 48 46 46 31 25 31 31 30 31 31 31 29 24 38 30 31 31 48 30 27 27 31 25 31 24 27 30 27 30 31 24 26 31 22 37 22 30 32 24 24 27 19 21 14 39 22 15 11 15 16 48 48 33 33 19 29 19 22 21 26 48 32 24 24 32 28 23 29 12 13 27 23 23 21 37 5 10 10 20 31 16 18 21 10 34 24 21 43 20 22 21 30 18 47 21 32 20 43 18 16 27 32 28 21 22 23 24 8 17 9 15 31 17 15 12 43 22 12 9 23 15 22 10 24 14 33 28 9 17 15 20 18 17 13 17 19 23 28 9 20 9 28 20 7 20 8 18 21 13 13 21 38 34 5 6 11 13 12 13 27 13 19 24 13 15 28 16 20 24 11 10 25 6 14 7 14 20 16 6 30 16 15 8 16 9 14 14 8 27 19 9 13 9 19 6 19 4 4 6 8 8 11 4 8 8 6 15 9 28 28 18 12 11 23 24 7 7 5 10 18 10 10 7 4 2 7 11 8 10 4 1 2 6 6 7 7 7 7 16 5 6 4 6 22 6 18 28 16 6 4 7 5 7 12 26 22 14 11 7 13 4 3 2 3 6 17 19 3 3 3 1 5 3 12 8 2 6 6 10 16 5 6 3 2 2 3 6 4 4 6 14 3 3 2 6 7 14 7 5 23 13 5 15 5 10 6 3 8 6 20 10 16 14 4 4 4 1 3 3 4 7 9 4 4 6 17 9 1 3 7 14 6 4 12 6 6 9 2 4 4 4 6 4 4 7 6 5 4 1 1 7 4	Open. Hide. 62 49 59 59 62 59 43 59 50 50 25 28 38 31 28 32 45 50 62 62 59 59 62 62 62 62 62 59 49 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 54 62 62 62 62 59 62 59 59 54 42 49 54 59 62 62 59 62 62 54 49 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 49 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 54 58 58 58 58 52 58 58 58 58 58 58 58 58 58 58 58 58 58 52 54 39 58 58 58 58 52 58 58 58 58 58 58 54 58 58 58 54 58 58 58 58 58 42 54 58 54 58 58 58 54 54 58 58 53 58 58 58 45 32 58 54 51 49 47 58 58 58 58 58 58 37 58 58 58 58 58 41 54 54 58 49 42 58 58 39 58 48 50 51 58 58 46 37 51 53 50 51 47 53 51 39 32 58 51 50 58 46 58 48 46 32 58 58 32 58 58 41 23 58 58 58 51 47 41 48 50 50 54 41 50 51 32 40 51 41 30 58 53 53 31 58 51 52 58 49 52 37 39 53 50 37 50 58 53 40 36 39 58 54 46 39 51 39 30 31 10 23 41 53 49 49 32 42 37 49 40 49 47 52 42 45 54 29 37 52 52 32 49 49 35 42 52 45 49 32 53 32 38 41 49 47 52 35 53 41 39 53 34 39 47 49 33 35 44 32 30 51 26 46 44 44 37 51 28 25 24 53 34 25 54 32 44 35 26 34 40 31 54 54 54 37 33 33 30 54 54 37 32 39 23 12 32 26 53 23 34 28 46 30 23 20 34 31 26 30 30 30 32 36 28 52 18 38 25 47 26 18 26 41 30 32 28 32 33 41 34 32 39 31 51 28 31 14 30 26 51 25 25 51 37 22 29 30 30 26 34 26 31 26 38 36 31 31 34 35 36 37 25 12 51 51 32 25 18 27 26 31 30 16 30 36 32 31 30 31 30 32 31 36 26 37 33 32 36 32 43 24 29 33 34 35 48 48 48 43 26 31 26 34 31 44 21 22 24 10 27 22 27 33 30 31 35 30 32 31 16 38 32 32 24 31 48 32 41 46 32 14 22 46 33 25 30 32 46 15 14 32 48 48 48 32 31 24 30 23 22 24 31 31 21 44 25 15 24 32 29 31 19 26 31 20 13 19 30 18 22 15 18 25 21 32 10 6 6 17 38 20 13 9 7 17 6 31 6 6 16 20 22 6 22 31 22 32 31 32 21 29 15 31 24 48 13 23 30 13 22 48 23 12 34 32 28 32 24 21 27 18 24 33 39 30 17 22 10 20 48 48 21 27 24 15 28 18 15 25 8 28 24 9 14 26 20 22 12 9 4 10 27 20 27 14 7 15 5 5 23 13 18 21 34 38 28 20 10 6 4 28 27 5 20 16 23 24 25 7 12 14 30 11 10 24 11 11 27 12 16 12 21 20 27 13 13 40 14 13 12 10 22 13 17 6 7 8 23 10 11 16 8 7 13 21 10 10 23 16 8 16 8 11 6 8 17 16 23 10 20 4 4 6 24 13 16 7 3 7 17 14 17 14 4 7 8 14 26 4 3 4 11 3 14 15 8 22 5 11 4 3 12 3 1 1 5 2 3 7 10 13 3 4 9 14 4 4 6 8 14 6 4 8 25 8 16 4 4 17 21 6 6 20

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_40026460_40027673
seq2: B6Ng01-347K05.g_68_1255

seq1  GAATTCATGAGTGGAAAGAAATGAAAGATTATTATCTCTGCTAGCTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGTGGAAAGAAATGAAAGATTATTATCTCTGCTAGCTTTCC  50

seq1  TGACAGGAAGTCACTGGGGCATAGAAATTGGGTGCTTGTTAAGGTGGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAAGTCACTGGGGCATAGAAATTGGGTGCTTGTTAAGGTGGGTC  100

seq1  AAGAATGACAGCAGAAAAAGACATGCAGCGTCCATCTGAGTTGGAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGACAGCAGAAAAAGACATGCAGCGTCCATCTGAGTTGGAATTCC  150

seq1  TGCTCATCACAGGCTTTTAGGCTCTTTCTGAACCTCAGACTCTTCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCACAGGCTTTTAGGCTCTTTCTGAACCTCAGACTCTTCCTCTG  200

seq1  GATATTGGAGATCTTATTAATTGTGCTATGCCTACCAAGCAGGAATGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGGAGATCTTATTAATTGTGCTATGCCTACCAAGCAGGAATGCTA  250

seq1  TATGGATTAAAATGAAATAATGTATGTGAAAGTACCTTGCAAATTGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTAAAATGAAATAATGTATGTGAAAGTACCTTGCAAATTGTAAA  300

seq1  GCACTCCTTATTTATTATTAAAATATTCAGTGTGTCCTGTTCTCATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCTTATTTATTATTAAAATATTCAGTGTGTCCTGTTCTCATGGCT  350

seq1  GCCCAGCTAGTTTAGGTTTTACTGAAGGAAAATTTATGAACACTAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTAGTTTAGGTTTTACTGAAGGAAAATTTATGAACACTAAAGCA  400

seq1  TCATTCTCAGGAGTGTTTTGTGAGCACAAAGCAGCTATAGCTTAACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCAGGAGTGTTTTGTGAGCACAAAGCAGCTATAGCTTAACACCT  450

seq1  ATTACTATTAATGTTCCCCTGTTTCTCTCTAACACAATTTAGACAGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATTAATGTTCCCCTGTTTCTCTCTAACACAATTTAGACAGACTC  500

seq1  CTATGCGTTGTGAACCTTCAGGAAGTCTAGTTCTCACAGAAACACCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCGTTGTGAACCTTCAGGAAGTCTAGTTCTCACAGAAACACCACTC  550

seq1  TTTCTTGCCAAACTACTGTACTAAATAAATATGCAATCATTGTTGCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCCAAACTACTGTACTAAATAAATATGCAATCATTGTTGCCAAT  600

seq1  AACCTTGAAGAAAAATAGGATTGTTTATGGCAGTACTACTAAAGGCGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGAAGAAAAATAGGATTGTTTATGGCAGTACTACTAAAGGCGGAT  650

seq1  GGCTGATTTTCTGAACTTCCAGGACTCTAAACTGCAGCAATTTAATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATTTTCTGAACTTCCAGGACTCTAAACTGCAGCAATTTAATTTAA  700

seq1  TTAAAATGAAGACCAGGCAGAATGCATTATTATACATTGATAATATATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGAAGACCAGGCAGAATGCATTATTATACATTGATAATATATGC  750

seq1  AGACACAGGCGGACATAGGGAATTATTTTGACAAAATTCACATAATGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGGCGGACATAGGGAATTATTTTGACAAAATTCACATAATGGAT  800

seq1  GCAGATCAGAGGCCCTGAACAAGCTAGTTTGTCAAATTTAATATGCCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCAGAGGCCCTGAACAAGCTAGTTTGTCAAATTTAATATGCCATC  850

seq1  TCTAGAATTTTAACAGCACTATGAACCTAACAGTAGTGATTTTTATATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATTTTAACAGCACTATGAACCTAACAGTAGTGATTTTTATATTG  900

seq1  TTGTGTAAGCCATAGAGTTGGGAAAGAAATGAAATAAAAATACAATGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAAGCCATAGAGTTGGGAAAGAAATGAAATAAAAATACAATGATT  950

seq1  TCTAGACAGTATAGGTGCTTCAGAACAAGGGAATGAAGAACTATGGTCAA  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTAGACAGTATAGGTGCTTCAGAACAAGGAAATGAAGAACTATGGTCAA  1000

seq1  ACCCTTTCAAATGATCATGGGCAGTTTTCAGCAAGGCAGTCTTGTCTATG  1050
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  ACCCTTTC-AATGATCATGGGCAGTTTTCAGCAA-GCAGTCTTGTCTATG  1048

seq1  AATCAGACCAAAAAGTCTTTAAGCTGGATGAACTAGTGATTGCTGCTTTA  1100
      ||||||||| ||||||||||||||| |||| |||||||| ||||||||||
seq2  AATCAGACC-AAAAGTCTTTAAGCT-GATG-ACTAGTGA-TGCTGCTTTA  1094

seq1  AGCTGGATGAACTAGTGATTGCTGCTTTAAGCTGGATGAACTAGTGATTG  1150
      |||| |||| ||||||||||||||| ||||||| |||| |||| ||| ||
seq2  AGCT-GATG-ACTAGTGATTGCTGC-TTAAGCT-GATG-ACTA-TGA-TG  1137

seq1  CTGCTTTTGTAGTGAAGATTAGGGTGAGTTTTACTCTCCTTCCACTTGAT  1200
      |||| |||||| || |||||||||||     ||  ||||||||| |||| 
seq2  CTGC-TTTGTA-TG-AGATTAGGGTG-----TA--CTCCTTCCA-TTGAA  1176

seq1  CAATAATGTGCTTG  1214
      |||||  |||||||
seq2  CAATA--GTGCTTG  1188

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information