BAC Information

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BAC

Clone NameB6Ng01-349E16
ChromosomeX (Build37)
Map Location 165,307,234 - 165,416,191
singlet/doubletdoublet
Overlap geneArhgap6
Upstream geneFrmpd4, EG667822, EG637566, Msl31
Downstream geneAmelx, Hccs, LOC100040950, BC022960, Mid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349E16.bB6Ng01-349E16.g
ACCGA130325GA130326
length1,1691,147
definitionB6Ng01-349E16.b B6Ng01-349E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,415,010 - 165,416,191)(165,307,234 - 165,308,387)
sequence
gaattccttccccagaaacttttgaagctagattactcagttattccatt
tccatgagcttctcttcaaagacagtagtagtttttttttctcatacact
tgcatacccacagacaactgcttcatatcttaaccaagatcatatgatca
acatagggacggaaaggcacaaagctcaagaaccaaaaagacagggagca
tgggaagtagcagcaatgtttagagtgctgtcatggaaacgcaccaagct
gtggggctgtggtgagtggtaaaagctaatcaggccacagagggagtatg
ctgtggttgaagaataaactgagcacaccaggacactccagaatttagtc
atggcaggcatttccataatgaagtccctagagaaagaacacattccatt
ccaagcgctgttgccaaacaaaccacatgacacccagttcaaatctaaat
ttcagataaaacaggtatactttcatgttgtctttcttaaatattacaca
ggatagatctatactgaaaaaaatattgggttttattggaattcaaagtt
aactagacatcaaacatttgtgtttccaagcctaatttcaaaaggagaaa
gctgggcataatagatgtggtggtttgaatgaaaatgggtcccataggct
tatataatttaatacctggtacccaactggtggaacttttttgggaagga
ttaagtggtatggccttgttggtggaagtgtgtcacttgggacaggcttt
caggtttcaaaatgtgttctctgactcttgcttgtgagatgtaagctgtc
agctgttcctgttaccatgccttttggtctgtgatcatggactcttaata
gtctagagtcataagacaaattaaatgtcttcttttataagttgctttgc
taatatgcaatgtttatcatagcatagaaggtaactaagacacaagtaat
gtgaaaaaaagcagaactttacatggccattttactcttcactcccctag
catagcagagagaagacattaatgccaaactcattcactaaatactacag
gacgaaaggattatgcttatctgatagttcaggaagatcggtagttcaca
gtattgagtatttttctcagtggaattagctgaaactagtatccagagtg
ctacgaagctagtgttgtg
gaattccagcactgtccgcccctcccccgactccccatttggatctggat
aatctggtcgaactggtgttttatctcccaaatagacccttaaagtactg
tataggctgagttaccacactcttcctggaaaacattttctttgaggttg
ctttggcttcccaggaatctatgcaccctgggctcattttctgaacgcat
cttgattctctatgtagattttagagcccaatttcctctccatcagcctg
cttcctgtgaccaaatgcctcaagcccctgccactgtgccttttcccaca
ccctcaaagtatgagtcaaaataaactcttttctttcttcctttctttct
ttttctttctttctttctttctttctttctttctttctttctttctttct
ttcttcccttttttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttgtttttgagacagggtctggaactcattgt
gtataccagcctggctttgaacttacagagatacacctgcctttgcctcc
taagttcttggattaaaggtgtgtaccatccacccagctataaacacttt
ttttttaaaaagttgccttttgtcagatatttggtcacagcaatgataca
tatgagcagtatactagaccattgggtggtttataattgaaagtccagtt
ttattacaaatcgatggtggttctaccttgtgttctttatgttgtatatc
tggtgccctttgttttgaaatgattcatttgattactctgctcagtttca
tttcttgttttttatttgatagacacagatattttgcaatcatcattata
gtatggatgattatcatatccatacttcacatgtgtttgcatatatgttc
atgtgttttgtctataaccatcatagtctttctgtatctgaattatatat
agcccattcgatgtggttattcctcaaaaattgaaattaaacttactatc
ctaaccaacatctcacttccaggtatttactcaaatgaaatggaaatcat
gattcaatgagttaccgttctcttatattggtgtattatgttcacattag
ctagacatagaatgtctataggcaaatgaataaataaggacagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_165415010_165416191
seq2: B6Ng01-349E16.b_46_1214 (reverse)

seq1  CACAACACTTACCTCCTACAACTCTGGATACTAAGTTTTCAGCT-ATTCA  49
      |||||||||  | || ||  |||||||||||||   |||||||| |||| 
seq2  CACAACACTAGCTTCGTAGCACTCTGGATACTA--GTTTCAGCTAATTCC  48

seq1  ACTGAAGAAAATACCTTCCATACTGTGGAACTTACGATCTTTCTGGAAAC  99
      |||||  |||||||  || ||||||| |||||  ||||||| |||  |||
seq2  ACTGAGAAAAATAC--TCAATACTGT-GAACTACCGATCTTCCTG--AAC  93

seq1  TTATCAGATAAGCCATAATTCTTTTCTTCTGTGTTATTTAGTGAATGAGT  149
       ||||||||||| |||||| ||||  | ||||  ||||||||||||||||
seq2  -TATCAGATAAG-CATAATCCTTTCGTCCTGTAGTATTTAGTGAATGAGT  141

seq1  TTGGCATTTATGTCTTCTCTCTGCTATGCTAGGGGAGTGAAGAGTAAAAT  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTAATGTCTTCTCTCTGCTATGCTAGGGGAGTGAAGAGTAAAAT  191

seq1  GGCCATGTAAAGTTTCTGCTTTTTTTCACATTTACTTGTTGTCTTAGTTA  249
      |||||||||||| ||||||||||||||||| ||||||| |||||||||||
seq2  GGCCATGTAAAG-TTCTGCTTTTTTTCACA-TTACTTG-TGTCTTAGTTA  238

seq1  CCTTTCTATTGCTATGATAAACATTGCATATTAGCAAAGCAACTTATAAA  299
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CC-TTCTA-TGCTATGATAAACATTGCATATTAGCAAAGCAACTTATAAA  286

seq1  AGAAGACATTTAATTTGTCTTATGACTCTAGACTATTAAGAGTCCATGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACATTTAATTTGTCTTATGACTCTAGACTATTAAGAGTCCATGAT  336

seq1  CACAGACCAAAAGGCATGGTAACAGGAACAGCTGACAGCTTACATCTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACCAAAAGGCATGGTAACAGGAACAGCTGACAGCTTACATCTCAC  386

seq1  AAGCAAGAGTCAGAGAACACATTTTGAAACCTGAAAGCCTGTCCCAAGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAGTCAGAGAACACATTTTGAAACCTGAAAGCCTGTCCCAAGTG  436

seq1  ACACACTTCCACCAACAAGGCCATACCACTTAATCCTTCCCAAAAAAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTCCACCAACAAGGCCATACCACTTAATCCTTCCCAAAAAAGTT  486

seq1  CCACCAGTTGGGTACCAGGTATTAAATTATATAAGCCTATGGGACCCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGTTGGGTACCAGGTATTAAATTATATAAGCCTATGGGACCCATT  536

seq1  TTCATTCAAACCACCACATCTATTATGCCCAGCTTTCTCCTTTTGAAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAAACCACCACATCTATTATGCCCAGCTTTCTCCTTTTGAAATT  586

seq1  AGGCTTGGAAACACAAATGTTTGATGTCTAGTTAACTTTGAATTCCAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGAAACACAAATGTTTGATGTCTAGTTAACTTTGAATTCCAATA  636

seq1  AAACCCAATATTTTTTTCAGTATAGATCTATCCTGTGTAATATTTAAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAATATTTTTTTCAGTATAGATCTATCCTGTGTAATATTTAAGAA  686

seq1  AGACAACATGAAAGTATACCTGTTTTATCTGAAATTTAGATTTGAACTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACATGAAAGTATACCTGTTTTATCTGAAATTTAGATTTGAACTGG  736

seq1  GTGTCATGTGGTTTGTTTGGCAACAGCGCTTGGAATGGAATGTGTTCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATGTGGTTTGTTTGGCAACAGCGCTTGGAATGGAATGTGTTCTTT  786

seq1  CTCTAGGGACTTCATTATGGAAATGCCTGCCATGACTAAATTCTGGAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGACTTCATTATGGAAATGCCTGCCATGACTAAATTCTGGAGTG  836

seq1  TCCTGGTGTGCTCAGTTTATTCTTCAACCACAGCATACTCCCTCTGTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGTGCTCAGTTTATTCTTCAACCACAGCATACTCCCTCTGTGGC  886

seq1  CTGATTAGCTTTTACCACTCACCACAGCCCCACAGCTTGGTGCGTTTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAGCTTTTACCACTCACCACAGCCCCACAGCTTGGTGCGTTTCCA  936

seq1  TGACAGCACTCTAAACATTGCTGCTACTTCCCATGCTCCCTGTCTTTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCACTCTAAACATTGCTGCTACTTCCCATGCTCCCTGTCTTTTTG  986

seq1  GTTCTTGAGCTTTGTGCCTTTCCGTCCCTATGTTGATCATATGATCTTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGAGCTTTGTGCCTTTCCGTCCCTATGTTGATCATATGATCTTGG  1036

seq1  TTAAGATATGAAGCAGTTGTCTGTGGGTATGCAAGTGTATGAGAAAAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATATGAAGCAGTTGTCTGTGGGTATGCAAGTGTATGAGAAAAAAA  1086

seq1  AACTACTACTGTCTTTGAAGAGAAGCTCATGGAAATGGAATAACTGAGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTACTGTCTTTGAAGAGAAGCTCATGGAAATGGAATAACTGAGTA  1136

seq1  ATCTAGCTTCAAAAGTTTCTGGGGAAGGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  ATCTAGCTTCAAAAGTTTCTGGGGAAGGAATTC  1169

seq1: chrX_165307234_165308387
seq2: B6Ng01-349E16.g_64_1210

seq1  GAATTCCAGCACTGTCCGCCCCTCCCCCGACTCCCCATTTGGATCTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACTGTCCGCCCCTCCCCCGACTCCCCATTTGGATCTGGAT  50

seq1  AATCTGGTCGAACTGGTGTTTTATCTCCCAAATAGACCCTTAAAGTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGTCGAACTGGTGTTTTATCTCCCAAATAGACCCTTAAAGTACTG  100

seq1  TATAGGCTGAGTTACCACACTCTTCCTGGAAAACATTTTCTTTGAGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCTGAGTTACCACACTCTTCCTGGAAAACATTTTCTTTGAGGTTG  150

seq1  CTTTGGCTTCCCAGGAATCTATGCACCCTGGGCTCATTTTCTGAACGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTTCCCAGGAATCTATGCACCCTGGGCTCATTTTCTGAACGCAT  200

seq1  CTTGATTCTCTATGTAGATTTTAGAGCCCAATTTCCTCTCCATCAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTCTCTATGTAGATTTTAGAGCCCAATTTCCTCTCCATCAGCCTG  250

seq1  CTTCCTGTGACCAAATGCCTCAAGCCCCTGCCACTGTGCCTTTTCCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTGACCAAATGCCTCAAGCCCCTGCCACTGTGCCTTTTCCCACA  300

seq1  CCCTCAAAGTATGAGTCAAAATAAACTCTTTTCTTTCTTCCTTTCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAGTATGAGTCAAAATAAACTCTTTTCTTTCTTCCTTTCTTTCT  350

seq1  TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  400

seq1  TTCTTCCCTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  450

seq1  CTTTCTTTCTTTCTTTCTTTGTTTTTGAGACAGGGTCTGGAACTCATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTGTTTTTGAGACAGGGTCTGGAACTCATTGT  500

seq1  GTATACCAGCCTGGCTTTGAACTTACAGAGATACACCTGCCTTTGCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCAGCCTGGCTTTGAACTTACAGAGATACACCTGCCTTTGCCTCC  550

seq1  TAAGTTCTTGGATTAAAGGTGTGTACCATCCACCCAGCTATAAACACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTTGGATTAAAGGTGTGTACCATCCACCCAGCTATAAACACTTT  600

seq1  TTTTTTAAAAAGTTGCCTTTTGTCAGATATTTGGTCACAGCAATGATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAGTTGCCTTTTGTCAGATATTTGGTCACAGCAATGATACA  650

seq1  TATGAGCAGTATACTAGACCATTGGGTGGTTTATAATTGAAAGTCCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCAGTATACTAGACCATTGGGTGGTTTATAATTGAAAGTCCAGTT  700

seq1  TTATTACAAATCGATGGTGGTTCTACCTTGTGTTCTTTATGTTGTATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACAAATCGATGGTGGTTCTACCTTGTGTTCTTTATGTTGTATATC  750

seq1  TGGTGCCCTTTGTTTTGAAATGATTCATTTGATTACTCTGCTCAGTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCTTTGTTTTGAAATGATTCATTTGATTACTCTGCTCAGTTTCA  800

seq1  TTTCTTGTTTTTTATTTGATAGACACAGATATTTTGCAATCATCATTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTTTTTATTTGATAGACACAGATATTTTGCAATCATCATTATA  850

seq1  GTATGGATGATTATCATATCCATACTTCACATGTGTTTGCATATATGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATGATTATCATATCCATACTTCACATGTGTTTGCATATATGTTC  900

seq1  ATGTGTTTTGTCTATAACCATCATAGTCTTTCTGTATCTGAATTATATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTGTCTATAACCATCATAGTCTTTCTGTATCTGAATTATATAT  950

seq1  AGCCCATTCGATGTGGTTATTCCTCAAAAAATTGAAATTAAACTTACTAT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCCCATTCGATGTGGTTATTCCTC-AAAAATTGAAATTAAACTTACTAT  999

seq1  CCTAACCAACAATCTCACTTCCAGGTATTTACTCAAATGAAAT-GAAATC  1049
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  CCTAACCAAC-ATCTCACTTCCAGGTATTTACTCAAATGAAATGGAAATC  1048

seq1  ATGTATTCAATGAGTTACCCGTTCTCTTATATTTGGTGTATTATTGTTCA  1099
      ||| ||||||||||||| ||||||||||||| ||||||||||| ||||||
seq2  ATG-ATTCAATGAGTTA-CCGTTCTCTTATA-TTGGTGTATTA-TGTTCA  1094

seq1  CATTAGCTAATACATAGAAATGTCTATAGGCAAATGAATAGATAAAGACA  1149
      |||||||| | |||||| |||||||||||||||||||||| |||| ||||
seq2  CATTAGCT-AGACATAG-AATGTCTATAGGCAAATGAATAAATAAGGACA  1142

seq1  GCATG  1154
      |||||
seq2  GCATG  1147