BAC Information

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BAC

Clone NameB6Ng01-349F15
ChromosomeX (Build37)
Map Location 37,495,021 - 37,607,433
singlet/doubletdoublet
Overlap genenone
Upstream gene1700085A12Rik, LOC100039715, EG636756, EG636766, EG245391
Downstream geneLOC100039769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349F15.bB6Ng01-349F15.g
ACCGA130371GA130372
length1,1971,190
definitionB6Ng01-349F15.b B6Ng01-349F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,606,226 - 37,607,433)(37,495,021 - 37,496,221)
sequence
gaattctcctatcaaacctaggcaaaaaaatcattaaatgtccttttatt
gcaatttaatggaaatgaaattagatctgtcttatcagagtgggactagt
caacactaaaagaagcagttgggctgccaaatggtcaatttacataaata
aatttgccttctttacaaagcaggaagtcttttcatgagagcctgcaaag
caacatcattcgcccagctgagtgagaattgatggactggtggtgaggct
gataagatttaagcaagaccttccctctctttttctctgtgcaaggtaat
ttttaagctttgcttttcctgtgatacctatcaaaatgttaatactgcac
atcctttccatgctattattacattcttaggaaagaagtgcacatcggaa
cacagcagttctattcaatctgaaataatagatattttggaatactcggt
tttgaataattcatttaaaaaaatctacagttaggatcacaaagttttct
ttctaaggatttacaacatttcttagaaactgccatataaagtagaaaat
tttattattcagtaatgtgtaccaagctcactcccctctctctcactctt
tccccaatgtgtactaaatatttactaaattatacactgttcttcatgtt
aaaataacaatttgaaggccacctatgataaactcccagcagattagaaa
tatcttctgtacatccatcagtaggagcattttctggtccctggaatgct
tttaggaacaggatacagatttgcgctgtgggcttttgagcagctggttg
catggccaattgcttcctctttgctttgctttgactaaattgtacttaca
ttcatatgtctcctctaagcctatgaactctgtggctcttggacctgagt
aaacactagaagcatggacataatcccagcctagcttcccctgcaatcag
gagacagcagtaaggcacagtttccatcagattcctttgatcacttctgc
tcagtgcctgacttctctctgtttgctatatctgttactttttctgaaac
attttcaaatgttgaggccagacagcccttccctattggcaatagcctgc
ttttgaataggtcttatctaaggtctcattgttttttatttcaatccatt
tcaaatatgtgagtctcagcatagaccttcagtatttgcgaggcctc
gaattcttgtaaaaaaaaaaaccatgaagtttctcttcatatattttttc
ctcaagattaaggtcaatctccacacaatgtttatacagctgtctagggt
gctacttcttttatttcttaaaattttgtgtttgaaattttgagtttcaa
tattttctaagggataaactgatagttttaatcagtactatatttgctaa
tcttattgttaaattagtactatcagtagaattatttaaacactaaccaa
atgaagaaaagattgccaacatacctgtaaaatctatcatgttctaactt
ctctcctaagatccaaccacaaacgtcataaaatatttgactatttttaa
atgtttgaagataatatttatgtgttgttttgtgtgattgacacagtatt
ttgaagtttctccatggattttcttgtagtattcttagctctattttgtg
ttcaattgcatgaatttatcattatttcaatcacagtatactgttaatat
agatttgagtattttctatttttcagttattaccaattaaactattttga
gtatttatggttctgtctcttggtgcacatgtgtactatttctgttcagt
aagcatataagaatgagtccatgtgattttattttattttgtttacctaa
gtgatttatctgtattaccattcccaaattggattagtcaatctgtctgg
acataggaatttttccttctaagagaaataatttaacaacctgtaataaa
ttgtttacatgtcagatatttccctaatagatgctctagactttcatata
aacagagacactatcttattaatatttacctcttcaatatatagtggagc
ttctggaacataggcaatcaataaatgtctagtgaccgataattataaat
gctaactcatgagtaaacaacctattaagggactgatggacaatatacag
agtcctgcagtttttcacttaacaaattatagatatatgacactattatg
tcccaggctgatgttagtgatattatatattaaaataatttatttctatg
ctctagtaccatgagaacttgtggaattctgttactttcaatatcgccgt
atattaagcttgtataaaataatgttatttttctgaaaacattgataggt
caatttatgtttcagtccttactaacagaaacgtaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_37606226_37607433
seq2: B6Ng01-349F15.b_48_1244 (reverse)

seq1  GAGGCCT-GCAAATTACTGAAAGTCTATGCTTGAGAACCTTCACATATTT  49
      ||||||| ||||| ||||||| |||||||| |||||    ||||||| ||
seq2  GAGGCCTCGCAAA-TACTGAAGGTCTATGC-TGAGA---CTCACATA-TT  44

seq1  TAAAATGGATTTAAAATAAAAACAAATGAAGACTTAGATAAGAACCTATT  99
      | ||||||| || |||||||||  |||||   |||||||||| |||||||
seq2  TGAAATGGA-TTGAAATAAAAAACAATGAGACCTTAGATAAG-ACCTATT  92

seq1  CAAAAAGCAGGCTATTG-CAATAGGG-AGGGCTGTTCTGGCCTCAACAAT  147
      | ||||||||||||||| |||||||| ||||||| |||||||||||| ||
seq2  C-AAAAGCAGGCTATTGCCAATAGGGAAGGGCTG-TCTGGCCTCAAC-AT  139

seq1  TTGAAAATGTTTCAGAAAAGTAAACAGATATTAAGCAAACAGAGAGAAGT  197
      |||||||||||||||||||   |||||||||  |||||||||||||||||
seq2  TTGAAAATGTTTCAGAAAAAGTAACAGATAT--AGCAAACAGAGAGAAGT  187

seq1  CAGGCACCTGAGCAGAAGTGATCAAAGGAATCTGATGGAAACTGTGCCTT  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCA-CTGAGCAGAAGTGATCAAAGGAATCTGATGGAAACTGTGCCTT  236

seq1  ACTGCTGTCTCCTGATTGCAGGGGAAGCTAGGCTGGGATTATGTCCATGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTCTCCTGATTGCAGGGGAAGCTAGGCTGGGATTATGTCCATGC  286

seq1  TTCTAGTGTTTACTCAGGTCCAAGAGCCACAGAGTTCATAGGCTTAGAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGTTTACTCAGGTCCAAGAGCCACAGAGTTCATAGGCTTAGAGG  336

seq1  AGACATATGAATGTAAGTACAATTTAGTCAAAGCAAAGCAAAGAGGAAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATGAATGTAAGTACAATTTAGTCAAAGCAAAGCAAAGAGGAAGC  386

seq1  AATTGGCCATGCAACCAGCTGCTCAAAAGCCCACAGCGCAAATCTGTATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCCATGCAACCAGCTGCTCAAAAGCCCACAGCGCAAATCTGTATC  436

seq1  CTGTTCCTAAAAGCATTCCAGGGACCAGAAAATGCTCCTACTGATGGATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTAAAAGCATTCCAGGGACCAGAAAATGCTCCTACTGATGGATG  486

seq1  TACAGAAGATATTTCTAATCTGCTGGGAGTTTATCATAGGTGGCCTTCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGATATTTCTAATCTGCTGGGAGTTTATCATAGGTGGCCTTCAA  536

seq1  ATTGTTATTTTAACATGAAGAACAGTGTATAATTTAGTAAATATTTAGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATTTTAACATGAAGAACAGTGTATAATTTAGTAAATATTTAGTA  586

seq1  CACATTGGGGAAAGAGTGAGAGAGAGGGGAGTGAGCTTGGTACACATTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGGGAAAGAGTGAGAGAGAGGGGAGTGAGCTTGGTACACATTAC  636

seq1  TGAATAATAAAATTTTCTACTTTATATGGCAGTTTCTAAGAAATGTTGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATAAAATTTTCTACTTTATATGGCAGTTTCTAAGAAATGTTGTA  686

seq1  AATCCTTAGAAAGAAAACTTTGTGATCCTAACTGTAGATTTTTTTAAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTAGAAAGAAAACTTTGTGATCCTAACTGTAGATTTTTTTAAATG  736

seq1  AATTATTCAAAACCGAGTATTCCAAAATATCTATTATTTCAGATTGAATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCAAAACCGAGTATTCCAAAATATCTATTATTTCAGATTGAATA  786

seq1  GAACTGCTGTGTTCCGATGTGCACTTCTTTCCTAAGAATGTAATAATAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCTGTGTTCCGATGTGCACTTCTTTCCTAAGAATGTAATAATAGC  836

seq1  ATGGAAAGGATGTGCAGTATTAACATTTTGATAGGTATCACAGGAAAAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGGATGTGCAGTATTAACATTTTGATAGGTATCACAGGAAAAGC  886

seq1  AAAGCTTAAAAATTACCTTGCACAGAGAAAAAGAGAGGGAAGGTCTTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTAAAAATTACCTTGCACAGAGAAAAAGAGAGGGAAGGTCTTGCT  936

seq1  TAAATCTTATCAGCCTCACCACCAGTCCATCAATTCTCACTCAGCTGGGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTATCAGCCTCACCACCAGTCCATCAATTCTCACTCAGCTGGGC  986

seq1  GAATGATGTTGCTTTGCAGGCTCTCATGAAAAGACTTCCTGCTTTGTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGTTGCTTTGCAGGCTCTCATGAAAAGACTTCCTGCTTTGTAAA  1036

seq1  GAAGGCAAATTTATTTATGTAAATTGACCATTTGGCAGCCCAACTGCTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAATTTATTTATGTAAATTGACCATTTGGCAGCCCAACTGCTTC  1086

seq1  TTTTAGTGTTGACTAGTCCCACTCTGATAAGACAGATCTAATTTCATTTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGTTGACTAGTCCCACTCTGATAAGACAGATCTAATTTCATTTC  1136

seq1  CATTAAATTGCAATAAAAGGACATTTAATGATTTTTTTGCCTAGGTTTGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTGCAATAAAAGGACATTTAATGATTTTTTTGCCTAGGTTTGA  1186

seq1  TAGGAGAATTC  1208
      |||||||||||
seq2  TAGGAGAATTC  1197

seq1: chrX_37495021_37496221
seq2: B6Ng01-349F15.g_66_1255

seq1  GAATTCTTGTAAAAAAAAAAACCATGAAGTTTCTCTTCATATATTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTAAAAAAAAAAACCATGAAGTTTCTCTTCATATATTTTTTC  50

seq1  CTCAAGATTAAGGTCAATCTCCACACAATGTTTATACAGCTGTCTAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATTAAGGTCAATCTCCACACAATGTTTATACAGCTGTCTAGGGT  100

seq1  GCTACTTCTTTTATTTCTTAAAATTTTGTGTTTGAAATTTTGAGTTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTCTTTTATTTCTTAAAATTTTGTGTTTGAAATTTTGAGTTTCAA  150

seq1  TATTTTCTAAGGGATAAACTGATAGTTTTAATCAGTACTATATTTGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTAAGGGATAAACTGATAGTTTTAATCAGTACTATATTTGCTAA  200

seq1  TCTTATTGTTAAATTAGTACTATCAGTAGAATTATTTAAACACTAACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGTTAAATTAGTACTATCAGTAGAATTATTTAAACACTAACCAA  250

seq1  ATGAAGAAAAGATTGCCAACATACCTGTAAAATCTATCATGTTCTAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAAGATTGCCAACATACCTGTAAAATCTATCATGTTCTAACTT  300

seq1  CTCTCCTAAGATCCAACCACAAACGTCATAAAATATTTGACTATTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTAAGATCCAACCACAAACGTCATAAAATATTTGACTATTTTTAA  350

seq1  ATGTTTGAAGATAATATTTATGTGTTGTTTTGTGTGATTGACACAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAAGATAATATTTATGTGTTGTTTTGTGTGATTGACACAGTATT  400

seq1  TTGAAGTTTCTCCATGGATTTTCTTGTAGTATTCTTAGCTCTATTTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTTCTCCATGGATTTTCTTGTAGTATTCTTAGCTCTATTTTGTG  450

seq1  TTCAATTGCATGAATTTATCATTATTTCAATCACAGTATACTGTTAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTGCATGAATTTATCATTATTTCAATCACAGTATACTGTTAATAT  500

seq1  AGATTTGAGTATTTTCTATTTTTCAGTTATTACCAATTAAACTATTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGAGTATTTTCTATTTTTCAGTTATTACCAATTAAACTATTTTGA  550

seq1  GTATTTATGGTTCTGTCTCTTGGTGCACATGTGTACTATTTCTGTTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATGGTTCTGTCTCTTGGTGCACATGTGTACTATTTCTGTTCAGT  600

seq1  AAGCATATAAGAATGAGTCCATGTGATTTTATTTTATTTTGTTTACCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATAAGAATGAGTCCATGTGATTTTATTTTATTTTGTTTACCTAA  650

seq1  GTGATTTATCTGTATTACCATTCCCAAATTGGATTAGTCAATCTGTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTATCTGTATTACCATTCCCAAATTGGATTAGTCAATCTGTCTGG  700

seq1  ACATAGGAATTTTTCCTTCTAAGAGAAATAATTTAACAACCTGTAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGAATTTTTCCTTCTAAGAGAAATAATTTAACAACCTGTAATAAA  750

seq1  TTGTTTACATGTCAGATATTTCCCTAATAGATGCTCTAGACTTTCATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACATGTCAGATATTTCCCTAATAGATGCTCTAGACTTTCATATA  800

seq1  AACAGAGACACTATCTTATTAATATTTACCTCTTCAATATATAGTGGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGACACTATCTTATTAATATTTACCTCTTCAATATATAGTGGAGC  850

seq1  TTCTGGAACATAGGCAATCAATAAATGTCTAGTGACCGATAAATATAAAT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCTGGAACATAGGCAATCAATAAATGTCTAGTGACCGATAATTATAAAT  900

seq1  GCTAACTCATGAGTAAACAACCTATTAAGGGACTGATGGACAAATATAAC  950
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  GCTAACTCATGAGTAAACAACCTATTAAGGGACTGATGGAC-AATAT-AC  948

seq1  AGAGTCCTGCAGTTTTTCAACTTAACAAATTAATAGAATATATGAACACC  1000
      |||||||||||||||||| |||||||||||| |||| ||||||| ||| |
seq2  AGAGTCCTGCAGTTTTTC-ACTTAACAAATT-ATAG-ATATATG-ACA-C  993

seq1  TATTATGTCCCAGGCTGATGTTAAGTGATATTATTAATATTAAAAATAAA  1050
      |||||||||||||||||||||| |||||||||||  |||||||||   ||
seq2  TATTATGTCCCAGGCTGATGTT-AGTGATATTAT--ATATTAAAA--TAA  1038

seq1  TTTATTTCTATGCTCTAGTACCATGAAGAACTTGTGGTATTTTGGTTAAT  1100
      ||||||||||||||||||||||||| ||||||||||| ||| ||  | | 
seq2  TTTATTTCTATGCTCTAGTACCATG-AGAACTTGTGGAATTCTG--TTAC  1085

seq1  TTTAAATATTGGTGTATATTA--GTTGTATAAAATAAATGTTATTTTT-T  1147
      ||| ||||| |  ||||||||   ||||||||||| |||||||||||| |
seq2  TTTCAATATCGCCGTATATTAAGCTTGTATAAAAT-AATGTTATTTTTCT  1134

seq1  GAAAACATTAAATAGTCAATTTTATG-TTCAGTCATTATTAACAG--AGT  1194
      ||||||||| |   ||||| |||||| ||||||| ||| ||||||  |  
seq2  GAAAACATTGATAGGTCAA-TTTATGTTTCAGTCCTTACTAACAGAAACG  1183

seq1  TAAATTT  1201
      |||||||
seq2  TAAATTT  1190