BAC Information

Click to search

BAC

Clone NameMSMg01-045B06
ChromosomeX (Build37)
Map Location 86,091,503 - 86,092,040
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707
Downstream geneEG436213, LOC667919, LOC100041727, LOC667934, Pet2, EG629419, 4932429P05Rik, LOC633246
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045B06.T7 (MSMg01no045_b06.b1)MSMg01-045B06.TJ (MSMg01no045_b06.g1)
ACCAG275799AG275800
length664669
length of high quality
(start - end)
587 (42 - 628)594 (76 - 669)
definitionCHROMAT_FILE: MSMg01no045_b06.b1 PHD_FILE: MSMg01no045_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:04:56 2005CHROMAT_FILE: MSMg01no045_b06.g1 PHD_FILE: MSMg01no045_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:04:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGGATCCGCGGAAT
TCTCTGAGAGTGACTCTTAGTAGTCTCAACTCTTTTGTGCTGGAAGGAAT
GAGACTAATGAATCTCATCAATTTCAGGAACTTGATGAAGCTATTTTGAG
TTGTCTACTTTTTACTTAAAGGAGCTACCCTGTAGGATGATATGTTTCAA
TCTGGGAGAAGACTGACAGACAATACTTTATGATCTATATAATTATTTGT
ACATAAAACATTTATTCCTTTTCAGTGAAATATATTTGACACACATAGTA
TGTATAAGTGATTGCAGCACACAAAGTGGCATTTTGAAACATTTATAAGG
TACATGGTGACAAAATGATAAAGTTAAATCCATCTCTCAATACTTCTCAC
TTCTTTGTATTGAGGCATATTTTCCAGGGATTCACTGCAAATTTTGCTTT
CTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCTTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTCAACTCGTTTCTCTCCTTCCTT
TTCTCCTAGTCCCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAATAGAAGTTTAAAAATGCCAGG
AGGAACATTTACAAAAATGTATAATCTCCTTAGCTATCAGGGAAATGTAA
ATCAAATCAAATCTGAGTTTCTATCTTATGCATGTCAGAATGGTTAAGAT
AAAAACACAAATGACATGGTGAGAAGGATGCAGAGTAAGGACAATACTCA
TCTATTGCTGTTGGTAGCACAGACATTTACAGCCTTTATGGAAACAATAT
GGCGGTTCCTTAGGAAGATGTGAACCAATCTATCTCAACATCCAGCTATA
ATATTTTGGAGCATACACCCAAGAATGAAGTACCTTGTGGTACTTTATTG
TATCCCAAGGGCAACTGCTCAAACATGTTTGTTGCTGCTCTATTCATAAT
AGCCAGATAGTGGAACTAAACTAGATGTCTCCAAACAGAAGAATGGATAA
AGAAAATGTAGCACATTTATGTGATGAAACATTACTCAGCTGTATAAAAA
ATAACATTATAAAAATTGTAGGCAAATGGATGGAAGTAAAATATCATTTT
GAGTGAGGTAATGCAGACCCAGAAAGATAAATGTTATTCACTATATGTAG
ATATTAACCATTAAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_b06.b1 MSMg01no045_b06.b1 CHROMAT_FILE:
MSMg01no045_b06.b1 PHD_FILE: MSMg01no045_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:56 2005
         (587 letters)



>mm_chrX_86091256_86092242
          Length = 987

 Score =  944 bits (488), Expect = 0.0
 Identities = 529/546 (96%), Gaps = 8/546 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctctgagagtgactcttagtagtctcaactcttttgtgctggaaggaatgagact 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaattctctgagagtgactcttagtagtctcaactcttttgtgctggaaggaatgagact 726

                                                                       
Query: 66  aatgaatctcatcaatttcaggaacttgatgaagctattttgagttgtctactttttact 125
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 725 aatgaatctcatcaatttcaggaacttgatgaagctattttgagttatctactttttatt 666

                                                                       
Query: 126 taaaggagctaccctgtaggatgatatgtttcaatctgggagaagactgacagacaatac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 taaaggagctaccctgtaggatgatatgtttcaatctgggagaagactgacagacaatac 606

                                                                       
Query: 186 tttatgatctatataattatttgtacataaaacatttattccttttcagtgaaatatatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttatgatctatataattatttgtacataaaacatttattccttttcagtgaaatatatt 546

                                                                       
Query: 246 tgacacacatagtatgtataagtgattgcagcacacaaagtggcattttgaaacatttat 305
           ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 545 tgacacacatagtatgtataaatgattgcagcacacaaagtggcagtttgaaacatttat 486

                                                                       
Query: 306 aaggtacatggtgacaaaatgataaagttaaatccatctctcaatacttctcacttcttt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaggtacatggtgacaaaatgataaagttaaatccatctctcaatacttctcacttcttt 426

                                                                       
Query: 366 gtattgaggcatattttccagggattcactgcaaattttgctttcttccttccttccttc 425
           ||||||||| ||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 425 gtattgaggtatattttccagggattcactgcaaattttgcttt----cttccttccttc 370

                                                                       
Query: 426 cttctttccttccttctttccttccttccttccttccttccttccttccttccttccttc 485
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cttctttccttccttccttccttccttccttccttccttccttccttccttccttccttc 310

                                                                       
Query: 486 cttccttccttccttccttcctttctttctttctttctttctttctttctttctttcctt 545
           ||||||| |||  ||  || ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 309 cttcctttctt--tt--tttctttctttctttctttctttctttctttctttctttcttt 254

                 
Query: 546 ctttct 551
           ||||||
Sbjct: 253 ctttct 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)