BAC Information

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BAC

Clone NameMSMg01-045E23
ChromosomeX (Build37)
Map Location 13,117,480 - 13,117,726
singlet/doubletsinglet
Overlap geneCask
Upstream geneAtp6ap2, LOC668986, EG245347, 1810030O07Rik, Crsp2, LOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416
Downstream geneGpr34, Gpr82, LOC385327, EG385328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045E23.T7 (MSMg01no045_e23.b1)MSMg01-045E23.TJ (MSMg01no045_e23.g1)
ACCAG275975AG275976
length744698
length of high quality
(start - end)
266 (107 - 372)247 (74 - 320)
definitionCHROMAT_FILE: MSMg01no045_e23.b1 PHD_FILE: MSMg01no045_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:14 2005CHROMAT_FILE: MSMg01no045_e23.g1 PHD_FILE: MSMg01no045_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCCNNCCCCTTCCCNCCCCCCCNACCAACACATAANCTNATAACACAC
ATAATAGATATATTCTATAATTGCGGCCGCTAATAGATCACTATTCTCAC
GAATCCGCGGAATTCATTTGTTTCCTCTTTAAGACCTCTGCCTGTTTGAT
TGTATTTTTCTGCGTTTCTTTAAAGGATTATACATTTCCTCTTTAAAGAC
CTCTATCTTTACAAGATTGGATTTACAGTCATTTTCTTGTGCTTCTGTTA
TGTTAAGATATCCAGAGCTAGCTATAGTGTGGTAGCTGTGTTCTGAAGGT
GTCATATTTCCCTGGCTTTTGACGATTGTGTTCTTTCAAGAGCTAAAGGT
CAACTGGATGGCTTTGGTCCTTGGATGATCTTATAGTACATATTGGGAGG
CAGTGGTTGATCTGGATGGTCCTGGTGTGCCAGGCCTCTGTTGGGTATCC
TTGAGTTGTATGCCTGTGAAACTGCACGTCTATATGGTTCCGGTTCCCAC
GGTTTGTATGGTTCACGAGTTGTATATCCAATAAAGGTAGTCAGATATCT
GCCAGGAGAATGATCGTTTCTTTGTTCTACCATGTTGCTCAAAATTATTT
GTCGTGCCCATATTACTGAATGAACATCTAATATGCTACGGCCGACGGAT
CTGAGCCTCTTTCATATTATACTCTCCACTATTTTTCTCGCCATCCTTAA
TTTCCTACATATTTCCCTCTCCTCTTCTATATCATTCCCTTCCT
TTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTTAGTTTAAGTTACTGACTTAAA
CTTTTTAACAAATTACAAAGTCTATATTAATATTTTTAATATGAGCCATC
AAAACAGCAGTATTTAGTGTCCTGAAAATACTGCTTATATGGGTAGATAT
GAACTTAGGGGATTTCTGGAATAGTATTCATAATATTTAAATTATGCTTA
ATACTACAAACTGTCCTAAAGAAAAGTGGCATATAACCTCACTGACATTG
GCAATTTTTTAATAATAAAAATATGGATTTATGTATAGCTTGGTGATAGA
GTACTTTATTAGCATGTGCAAGGCTTGAGCCCAAGCTCCATGAAATATAA
TAATAAGATAATAGACACCCTTAATTAGAAACCACAAATGATACAGGAAT
GCACAATGTAAAAAAAATAAAAGGCCCCTACCTTTGTTTTCTCTAAAGAT
GGTTTCTTATCTTTTACACATAAAATTTCCATATACTTGCTATCATATAA
AATTCACTGCCTTTCATATCCAGGTATGATTGAATTTGTATTACAATGAG
TTTGTTTCTTAATGTGGTCTATTTACCTTGTGCTTAAAATATTGCACGAC
TCAGCTTATTTTGCGTCCATTACCCCTTTACTTTACCCATACTTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_e23.g1 MSMg01no045_e23.g1 CHROMAT_FILE:
MSMg01no045_e23.g1 PHD_FILE: MSMg01no045_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:14 2005
         (247 letters)



>mm_chrX_13117280_13117926
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttagtttaagttactgacttaaactttttaacaaattacaaagtctatattaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acttttagtttaagttactgacttaaactttttaacaaattacaaagtctatattaatat 388

                                                                       
Query: 61  ttttaatatgagccatcaaaacagcagtatttagtgtcctgaaaatactgcttatatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttttaatatgagccatcaaaacagcagtatttagtgtcctgaaaatactgcttatatggg 328

                                                                       
Query: 121 tagatatgaacttaggggatttctggaatagtattcataatatttaaattatgcttaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tagatatgaacttaggggatttctggaatagtattcataatatttaaattatgcttaata 268

                                                                       
Query: 181 ctacaaactgtcctaaagaaaagtggcatataacctcactgacattggcaattttttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctacaaactgtcctaaagaaaagtggcatataacctcactgacattggcaattttttaat 208

                  
Query: 241 aataaaa 247
           |||||||
Sbjct: 207 aataaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)