BAC Information

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BAC

Clone NameMSMg01-045H19
ChromosomeX (Build37)
Map Location 147,699,257 - 147,699,649
singlet/doubletsinglet
Overlap geneWnk3
Upstream geneLOC333588, Tmem29, LOC100040101, Alas2, Apex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, LOC675278
Downstream geneORF34, LOC623804, LOC100039760, Phf8, LOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045H19.T7 (MSMg01no045_h19.b1)MSMg01-045H19.TJ (MSMg01no045_h19.g1)
ACCAG276109AG276110
length710715
length of high quality
(start - end)		623 (43 - 665)641 (75 - 715)
definitionCHROMAT_FILE: MSMg01no045_h19.b1 PHD_FILE: MSMg01no045_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:27 2005CHROMAT_FILE: MSMg01no045_h19.g1 PHD_FILE: MSMg01no045_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTCTGAGCCCCAGTTTTTAATGGGGTTATTTGATTTTCT
GGAGTTCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTCGTGTCCTTTTT
GTCGTATTGACAGTGTCTTTTGCCCTACAGAAGCTTTGTAATTTTATGAA
GTCCCATTTGTTGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTAT
TCAGGAATTTTTCCTCTGTGCCCATATCTTTGAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCACTGTCTCTTGTTTTATGTGGAGTTAGATTTGACC
TTAGTAAAAGGAGATAGTAATGGATCAATTCCCATTCTTCTACATGATAA
ACGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTTTTTTTCCCATT
GGATGGTTTTAGCTCCCTTGTCAAAGATCTAGTGACCATAGGTGTATGGG
TTAATTTTTGGGTCTTCAATTTTATTCCATTGGTCTGTCGCTATACCAGT
ACCGTGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTCAGGC
ATGGTTTATTTTTTAAAGAGACCAGATATCTTGTCCAGCTAGCCTGACAC
CATGCTTATT

CGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCAGAGTGGTAGGGACATATCAAGA
AAATAGATTGAAGGACTACTAATGCCCAAACATTAGACACAAAATAAGTA
AGAAGAAAATAGTCTATTCGATAAAATAATTATGTGAATTCACACTGATA
TGGACAAACACATGAGGAAAAGACAGGTCTAACTATAAAAAGACAGCTAA
TACAAGAAGGGATGTGGAAAAATCATAAATGGATGCTAAAACTAGTAAAA
GTTAGATGAAGAACAGTATAATTATATAGTTTCAAAGAGTGTCCCTATAT
TACTTTTGAATTATAAAGGCAAGCATGGTAATTTTACAGTGGCAAGATCA
TAGAAAGCCACATCTTAACCACATTATCAAATTTAATCCTCTAATGTTGA
GACAAACCAATACGATATAGAAAGAACAACCCAACCACACTTACACTGTA
TTCCCGACTTTAAAAAAATTATAACTTATACTAAAGAGGAGGATGATTCA
GGCAGAATCAAACTGAAGGTTATTTTACAAAATGATAAGCGTTCTTTCTT
CAGAGAGATCAAAGTAATAAAAGATGAAGCTTAAAGAACCAATCCAGATT
AAAGGAAACAAAACAGATGAGGCAATTAGAGGCAAAGTATGTTTTTAAAC
TAGATCATGAAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_h19.g1 MSMg01no045_h19.g1 CHROMAT_FILE:
MSMg01no045_h19.g1 PHD_FILE: MSMg01no045_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:27 2005
         (641 letters)



>mm_chrX_147699257_147700297
          Length = 1041

 Score =  760 bits (393), Expect = 0.0
 Identities = 393/393 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagagtggtagggacatatcaagaaaatagattgaaggactactaatgcccaaacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctcagagtggtagggacatatcaagaaaatagattgaaggactactaatgcccaaacatt 334

                                                                       
Query: 61  agacacaaaataagtaagaagaaaatagtctattcgataaaataattatgtgaattcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agacacaaaataagtaagaagaaaatagtctattcgataaaataattatgtgaattcaca 274

                                                                       
Query: 121 ctgatatggacaaacacatgaggaaaagacaggtctaactataaaaagacagctaataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctgatatggacaaacacatgaggaaaagacaggtctaactataaaaagacagctaataca 214

                                                                       
Query: 181 agaagggatgtggaaaaatcataaatggatgctaaaactagtaaaagttagatgaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 agaagggatgtggaaaaatcataaatggatgctaaaactagtaaaagttagatgaagaac 154

                                                                       
Query: 241 agtataattatatagtttcaaagagtgtccctatattacttttgaattataaaggcaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 agtataattatatagtttcaaagagtgtccctatattacttttgaattataaaggcaagc 94

                                                                       
Query: 301 atggtaattttacagtggcaagatcatagaaagccacatcttaaccacattatcaaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  atggtaattttacagtggcaagatcatagaaagccacatcttaaccacattatcaaattt 34

                                            
Query: 361 aatcctctaatgttgagacaaaccaatacgata 393
           |||||||||||||||||||||||||||||||||
Sbjct: 33  aatcctctaatgttgagacaaaccaatacgata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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