TTTTTTGTTTTTGTTTCTTCTATATCTTTTGAAGTACTTCTNCCCCACTA
TAANNTGATTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGAAGGTAATTACTAAAAACAAACAAACAAACAAATA
AAAAATAGGGTATAGAACTTAAGAATTCACAACAGAAGAATATTGAATGG
CTGAGAAGCATCAAATAAATATTCAATGTCCTTAGTAATCAGAAAAGTGG
GAAATAAAATGACCCTAAGATTCCATCTTATAACATTCAGAATAGCTAAG
ATCAAAATGCCAGGTGACAACACATTTTGGAGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTCCTGGTGGGATTGCAAACTGGTACAACTACTCTGTA
AATCAATCTGGAGGTTCCTCGGAAAATTGGAAACAGATCTACCTGAAGAT
GCAGCTATACCACTCTTGGGAACCCACCGAAAAGATGGCCTACCATGCCA
CAAGGGCATGTGTTCCACTATGTTCATAGCAGCCTTATTTGTGATAGCCA
GAAGCTGGAAACAACCTAGATGTCCCAGGACAGACGGATGGATACTGAAA
ACGTGTTTCATTTACCCAATTGAATACTACTCCGCTAATAAGAACAAGGG
CATCCTGAATTTTGCAGAAAAATGGATAAAACTAGAAAATATCCTCCTGA
GTGAGGTAACTCACACACCAAGTGATATGGATGGTATATACCCACTAATA
AATGGATATTAGCCAAAAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTTCATTTATTTCCAAATCATTCAAGAACAAGCCTATAGTTTT
TGTCAGCCAGCAGGAAAAAGTACTGGCTTATACATAACACAAAATAGTTT
GTACATAGGAAACAATACATGTAGAATGATTTAATGGTAAAAATAATAAT
GTCTATTATTAGATAAACTCTCCAGATAAATGAAAAACATTAACAATGAA
ATTGTAAGTGTAATAAACAGTATGGTATCCAAAATTGAAATTCAGCAGAA
TTTATAGAATTCATATGTTTCAGATGAAGTAAAAAATAATCATGAGAACA
TGTGATGACATAAAAATAAATAGTTATCAAGGGATAAAATTTTAGAAATT
TAGGTTTCAACTAGATTATCTTTATACATGAAAATAAGCATTGTGTACCT
AAGTGTTTTGTTGTTAAAGAATTTTAGAATTTAATTATTAAATTTATATT
TTGTAATGGCTTTATGCAATATATATATGACAATGTATGTATAAATTACT
ATATAAGTATATATATGGATATATGGATATATATATTTGGCTACCACATT
TCTATTGTTCCATCCTCTTTTTTTTTTTTACTTATCTTCTATAACTTCTT
CACCCCTCTTCTTTCTTTTTTCAATTCTCCTTCTCCTTTTCG

Query= MSMg01no045_j03.g1 MSMg01no045_j03.g1 CHROMAT_FILE:
MSMg01no045_j03.g1 PHD_FILE: MSMg01no045_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:33 2005
         (532 letters)



>mm_chrX_118277013_118277948
          Length = 936

 Score =  959 bits (496), Expect = 0.0
 Identities = 525/536 (97%), Gaps = 4/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttcatttatttccaaatcattcaagaacaagcctatagtttttgtcagccagcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttcatttatttccaaatcattcaagaacaagcctatagtttttgtcagccagcagga 260

                                                                       
Query: 61  aaaagtactggcttatacataacacaaaatagtttgtacataggaaacaatacatgtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagtactggcttatacataacacaaaatagtttgtacataggaaacaatacatgtaga 320

                                                                       
Query: 121 atgatttaatggtaaaaataataatgtctattattagataaactctccagataaatgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatttaatggtaaaaataataatgtctattattagataaactctccagataaatgaaa 380

                                                                       
Query: 181 aacattaacaatgaaattgtaagtgtaa-taaacagtatggtatccaaaattgaaattca 239
           ||||| |||||||||||||||||||||| |||| |||||| |||||||| ||||||||||
Sbjct: 381 aacatcaacaatgaaattgtaagtgtaaataaatagtatgatatccaaacttgaaattca 440

                                                                       
Query: 240 gcagaatttatagaattcatatgtttcagatgaagtaaaaaataatcatgagaacatgtg 299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagaatttatagaattcatatgtttcagatgaagtaaaaaataatcatgagaacatgtg 500

                                                                       
Query: 300 atgacataaaaataaatagttatcaagggataaaattttagaaatttaggtttcaactag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgacataaaaataaatagttatcaagggataaaattttagaaatttaggtttcaactag 560

                                                                       
Query: 360 attatctttatacatgaaaataagcattgtgtaccta---agtgttttgttgttaaagaa 416
           |||||||||||||||||||||||||||||||||||||   ||| ||||||||||||| ||
Sbjct: 561 attatctttatacatgaaaataagcattgtgtacctactaagtattttgttgttaaataa 620

                                                                       
Query: 417 ttttagaatttaattattaaatttatattttgtaatggctttatgcaatatatatatgac 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttagaatttaattattaaatttatattttgtaatggctttatgcaatatatatatgac 680

                                                                   
Query: 477 aatgtatgtataaattactatataagtatatatatggatatatggatatatatatt 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgtatgtataaattactatataagtatatatatggatatatggatatatatatt 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 936
Length adjustment: 10
Effective length of query: 522
Effective length of database: 926
Effective search space:   483372
Effective search space used:   483372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)