MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-046I04
Chromosome	X (Build37)
Map Location	130,228,700 - 130,229,141
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC665846, LOC665850, LOC665854, LOC100040794, Pcdh19
Downstream gene	LOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC665846 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665846
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins pseudo : _no_value

name	LOC665850 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665850
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC665854 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC100040794 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Pcdh19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:279653 MGI:2685563
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 29 ESTs, 182 Proteins

name	LOC100040831 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040831
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Tnmd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64103 MGI:1929885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tspan6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56496 MGI:1926264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Srpx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68792 MGI:1916042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Sytl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27359 MGI:1351606
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665889 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665889
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Cstf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108062 MGI:1343054
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nox1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237038 MGI:2450016
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Xkrx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:331524 MGI:3584011
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arl13a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74448 MGI:1921698
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 2 Proteins

name	4732479N06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215201 MGI:2442530
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040849 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040849
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Tmem35 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67564 MGI:1914814
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cenpi (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102920 MGI:2147897
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Drp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13497 MGI:107432
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Taf7l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74469 MGI:1921719
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC669370 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669370
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC674122 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:674122
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 2 Proteins pseudo : _no_value

name	Timm8a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30058 MGI:1353433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Btk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12229 MGI:88216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl36a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19982 MGI:1201789
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gla (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11605 MGI:1347344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hnrph2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56258 MGI:1201779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665936 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665936
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	LOC665941 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665941
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 3 Proteins pseudo : _no_value

name	Pcdh19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149272244 GeneID:279653 MGI:2685563
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 25 ESTs, 181 Proteins product : protocadherin 19, transcript variant 2 transcript_id : XM_205287.6

name	Pcdh19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149272245 GeneID:279653 MGI:2685563
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 24 ESTs, 32 Proteins product : protocadherin 19, transcript variant 1 transcript_id : XM_001473606.1

name	Tnmd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981227 GeneID:64103 MGI:1929885
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tenomodulin transcript_id : NM_022322.2

name	Tspan6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125490374 GeneID:56496 MGI:1926264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetraspanin 6 transcript_id : NM_019656.3

name	Srpx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140972079 GeneID:68792 MGI:1916042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sushi-repeat-containing protein, X-linked 2 transcript_id : NM_026838.2

name	Srpx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140971049 GeneID:68792 MGI:1916042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sushi-repeat-containing protein, X-linked 2 transcript_id : NM_001083895.1

name	Sytl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305098 GeneID:27359 MGI:1351606
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptotagmin-like 4 transcript_id : NM_013757.1

name	Cstf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385938 GeneID:108062 MGI:1343054
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cleavage stimulation factor, 3' pre-RNA subunit 2 transcript_id : NM_133196.4

name	Nox1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:26251302 GeneID:237038 MGI:2450016
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADPH oxidase 1 transcript_id : NM_172203.1

name	Xkrx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:59858576 GeneID:331524 MGI:3584011
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : X Kell blood group precursor related X linked transcript_id : NM_183319.2

name	Arl13a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94408238 GeneID:74448 MGI:1921698
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 2 Proteins product : ADP-ribosylation factor-like 13A, transcript variant 1 transcript_id : XM_136037.3

name	4732479N06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27369763 GeneID:215201 MGI:2442530
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4732479N06 gene transcript_id : NM_172540.1

name	Tmem35 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982652 GeneID:67564 MGI:1914814
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 35 transcript_id : NM_026239.2

name	Cenpi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130223 GeneID:102920 MGI:2147897
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centromere protein I transcript_id : NM_145924.2

name	Drp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345112 GeneID:13497 MGI:107432
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dystrophin related protein 2 transcript_id : NM_010078.2

name	Taf7l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130557 GeneID:74469 MGI:1921719
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor transcript_id : NM_028958.3

name	Timm8a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373281 GeneID:30058 MGI:1353433
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : translocase of inner mitochondrial membrane 8 homolog a1 (yeast) transcript_id : NM_013898.2

name	Btk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7709993 GeneID:12229 MGI:88216
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bruton agammaglobulinemia tyrosine kinase transcript_id : NM_013482.1

name	Rpl36a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802220 GeneID:19982 MGI:1201789
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L36a transcript_id : NM_019865.3

name	Gla (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778923 GeneID:11605 MGI:1347344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : galactosidase, alpha transcript_id : NM_013463.2

name	Hnrph2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980970 GeneID:56258 MGI:1201779
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein H2 transcript_id : NM_019868.2

name	Pcdh19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38087300 GeneID:279653 MGI:2685563
definition	codon_start : 1 product : similar to protocadherin 19 isoform 2 protein_id : XP_205287.3

name	Pcdh19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149272246 GeneID:279653 MGI:2685563
definition	codon_start : 1 product : similar to protocadherin 19 isoform 1 protein_id : XP_001473656.1

name	Tnmd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11968164 CCDS:CCDS30386.1 GeneID:64103 MGI:1929885
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : myodulin; tendin product : tenomodulin protein_id : NP_071717.1

name	Tspan6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560378 CCDS:CCDS30387.1 GeneID:56496 MGI:1926264
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : tetraspan TM4SF; transmembrane 4 superfamily member 6 product : tetraspanin 6 protein_id : NP_062630.2

name	Srpx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:140971050 GeneID:68792 MGI:1916042
definition	codon_start : 1 product : sushi-repeat containing protein protein_id : NP_001077364.1

name	Srpx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703702 GeneID:68792 MGI:1916042
definition	codon_start : 1 product : sushi-repeat containing protein protein_id : NP_081114.1

name	Sytl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305099 CCDS:CCDS30388.1 GeneID:27359 MGI:1351606
definition	GO_component : GO:0019897 - extrinsic to plasma membrane [Evidence IDA]; GO:0030141 - secretory granule [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0042043 - neurexin binding [Evidence IDA]; GO:0005543 - phospholipid binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0017137 - Rab GTPase binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] [Evidence NAS] GO_process : GO:0006887 - exocytosis [Evidence IDA] codon_start : 1 note : granuphilin; granuphilin-a; granuphilin-b product : synaptotagmin-like 4 protein_id : NP_038785.1

name	Cstf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875338 CCDS:CCDS30389.1 GeneID:108062 MGI:1343054
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA] codon_start : 1 note : cleavage stimulation factor, 3' pre-RNA subunit 2, 64 kDa product : cleavage stimulation factor, 3' pre-RNA subunit 2 protein_id : NP_573459.1

name	Nox1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26251303 CCDS:CCDS30390.1 GeneID:237038 MGI:2450016
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0050660 - FAD binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016175 - superoxide-generating NADPH oxidase activity [Evidence IDA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0042554 - superoxide release [Evidence IDA] codon_start : 1 note : NADH/NADPH mitogenic oxidase subunit p65-mox; NADPH oxidase 1 alpha; GP91 phox homolog product : NADPH oxidase 1 protein_id : NP_757340.1

name	Xkrx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59858577 CCDS:CCDS30391.1 GeneID:331524 MGI:3584011
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : XK-related protein 2 product : X Kell blood group precursor related X linked protein_id : NP_899142.2

name	Arl13a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20985424 GeneID:74448 MGI:1921698
definition	codon_start : 1 product : ADP-ribosylation factor-like 13 isoform 1 protein_id : XP_136037.1

name	4732479N06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369764 GeneID:215201 MGI:2442530
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC215201 protein_id : NP_766128.1

name	Tmem35 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385744 CCDS:CCDS30392.1 GeneID:67564 MGI:1914814
definition	codon_start : 1 product : transmembrane protein 35 protein_id : NP_080515.1

name	Cenpi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122337 CCDS:CCDS30393.1 GeneID:102920 MGI:2147897
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] codon_start : 1 note : FSH primary response 1 product : follicle-stimulating hormone primary response protein 1 protein_id : NP_666036.1

name	Drp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45383916 CCDS:CCDS30394.1 GeneID:13497 MGI:107432
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : dystrophin related protein 2 protein_id : NP_034208.1

name	Taf7l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17921978 GeneID:74469 MGI:1921719
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 note : TATA box binding protein (TBP)-associated factor, RNA polymerase II, Q; TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50 kDa product : TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_id : NP_083234.1

name	Timm8a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305577 GeneID:30058 MGI:1353433
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0042719 - mitochondrial intermembrane space protein transporter complex [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0045039 - protein import into mitochondrial inner membrane [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]; GO:0006626 - protein targeting to mitochondrion [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : translocase of inner mitochondrial membrane 8 homolog a protein_id : NP_038926.1

name	Btk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7709994 CCDS:CCDS30396.1 GeneID:12229 MGI:88216
definition	GO_component : GO:0031410 - cytoplasmic vesicle [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007249 - I-kappaB kinase/NF-kappaB cascade [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0018108 - peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 exception : mismatches in translation note : Bruton's tyrosine kinase; X-linked immune deficiency product : Bruton agammaglobulinemia tyrosine kinase protein_id : NP_038510.1

name	Rpl36a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9845295 GeneID:19982 MGI:1201789
definition	GO_component : GO:0005830 - cytosolic ribosome (sensu Eukaryota) [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 note : ribosomal protein L44 product : ribosomal protein L36a protein_id : NP_063918.1

name	Gla (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133778924 GeneID:11605 MGI:1347344
definition	GO_component : GO:0005764 - lysosome [Evidence IEA] GO_function : GO:0004557 - alpha-galactosidase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : alpha-galactosidase product : alpha-galactosidase A protein_id : NP_038491.2

name	Hnrph2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9845253 CCDS:CCDS30397.1 GeneID:56258 MGI:1201779
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 note : heterogeneous nuclear ribonucleoprotein H' product : heterogeneous nuclear ribonucleoprotein H2 protein_id : NP_063921.1

name	LOC665846 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665846
definition	number : 2 pseudo : _no_value

name	LOC665846 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665846
definition	number : 1 pseudo : _no_value

name	LOC665850 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665850
definition	number : 2 pseudo : _no_value

name	LOC665850 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665850
definition	number : 1 pseudo : _no_value

name	LOC665854 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665854
definition	number : 2 pseudo : _no_value

name	LOC665854 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665854
definition	number : 1 pseudo : _no_value

name	LOC100040794 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040794
definition	number : 1 pseudo : _no_value

name	LOC100040794 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040794
definition	number : 2 pseudo : _no_value

name	LOC100040794 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040794
definition	number : 3 pseudo : _no_value

name	LOC100040794 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040794
definition	number : 4 pseudo : _no_value

name	LOC100040794 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040794
definition	number : 5 pseudo : _no_value

name	LOC100040831 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040831
definition	number : 2 pseudo : _no_value

name	LOC100040831 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040831
definition	number : 1 pseudo : _no_value

name	LOC665889 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665889
definition	number : 1 pseudo : _no_value

name	LOC100040849 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040849
definition	number : 1 pseudo : _no_value

name	LOC669370 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669370
definition	number : 1 pseudo : _no_value

name	LOC674122 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149272247 GeneID:674122
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 2 Proteins product : hypothetical LOC674122 pseudo : _no_value transcript_id : XR_031509.1

name	LOC665936 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149272269 GeneID:665936
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : hypothetical LOC665936 pseudo : _no_value transcript_id : XR_032258.1

name	LOC665941 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149272252 GeneID:665941
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 3 Proteins product : similar to 60S ribosomal protein L34 pseudo : _no_value transcript_id : XR_031574.1

clone name	MSMg01-496C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317K12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-503E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436O13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-133F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129H12
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-046I04.T7 (MSMg01no046_i04.b1)	MSMg01-046I04.TJ (MSMg01no046_i04.g1)
ACC	AG276870	AG276871
length	702	689
length of high quality (start - end)	438 (62 - 499)	435 (58 - 492)
definition	CHROMAT_FILE: MSMg01no046_i04.b1 PHD_FILE: MSMg01no046_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:41 2005	CHROMAT_FILE: MSMg01no046_i04.g1 PHD_FILE: MSMg01no046_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:41 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	GCGGCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCTTTTCA GGTATCAGACACAATTTCAAAATTCATACTGAAGTGCATACACACACACA CACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGG AGTACTCAATAAGAATCCCTCCCAAACCCAACTAGCCAAAGAAATCCCAA GAAAGCAGGAAAATATTGTAGGTATCACAATACCCAACTCCATACTAAAG TGAAGAATCCCAAGTAATAAAAGCCACGCAGAATTGACACAAGAACAGAT ATTTAGAGCAGTGAAAAGGAATAAAATGTTTGTAAACACAAACACAACTA TGCATCTACATCCATCTGATTCTTGATGATGGAAACAAAAGACAAAATTG GTGTAGGGGAAACTGAATATAGAAATGTAGAAAACTGAAAACAAATCAAC TCCTCATCAGACTGACTGAGGATTAGGTTGGTAGGGACTAGATCAAATTA TGATTATAATAACCCACTTAGATACAGTACAATTAGATCAGTCAGGGACA ATGTTGGCTGCCTCTTGAGCTGGCTGGTGATTACAGCATCCCATTATATT GCCCAGTGGGGGGTTCTGAACCCAGGCACAGTTAACAAACTTGGAATGGT CT	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXTCTCCAAGTGGATCCCAAATGCCAGTTTCCTAGGTGCAACCTC ATGCCAAATGTTATTCTCACCACCACCACCACATTCGAAAACAAACTGCT TTCCCTTCAAAGGCACTATGATCAATTCCTGCCTGGATTTCTCACTGTTG CCACTCTCATCCCTAAGAAGGAGGATAAGAGTGACATTCCACAGCTTTCC AGAAGAAAGGCTTTTGGCACCTTGAAAATGGGGGGTCCCCAAATTAGAGA GCTTCACAAAAACAATTGAAAAGGGGACACCCATGTTTACAAGGAGAGAT TAAAACTAGGATGCTTTCTTTGAAGACAAACACATTTTTATTTTTATTTT TATTTATCATTTTTCATTATCACTACTACCAAGCCATAATGCCACAACCT AGAGACTCCCAGGGACTTGGTACTTATGTAACTCTCTTAGATTAGAGCTT CTTGTGGGAACAGAGCTTTGGAATCTCAACCTAGAGTTCTCTACCTTTCA GCCAATTCTGCTTCTTCTAAGGTGGGTCAAGTAAAGCAAGAACTGGAGCA AAAATTCTAACACAAGGAAATATTTTCAGGTGCCTGAAAAATGCCTGGTC AAAACATCCGCTCTACAAAATGGGCCCGGATGATTACCT
quality values	Open. Hide. 11 12 22 17 17 14 18 17 9 9 17 17 31 31 26 22 10 12 11 21 12 8 8 8 6 7 8 13 16 19 17 21 21 22 26 34 44 44 36 36 36 50 36 36 50 50 30 30 20 18 12 15 8 6 6 6 8 8 9 8 8 19 19 33 33 36 36 36 36 36 50 50 42 37 37 40 40 42 53 53 53 42 42 47 47 47 47 50 68 53 47 41 41 42 42 41 41 41 41 41 42 39 37 37 37 37 30 35 41 36 36 35 35 35 35 36 30 30 30 26 23 35 37 37 35 26 26 25 25 38 43 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 57 57 57 57 57 57 57 57 57 57 57 52 52 52 57 57 57 57 43 43 39 43 43 59 59 57 57 52 52 57 57 52 52 45 52 52 52 59 59 57 57 52 57 57 57 59 57 57 57 52 57 57 38 37 43 57 57 52 43 43 35 35 32 44 44 57 57 57 57 57 57 57 57 57 57 57 54 57 57 57 57 57 57 57 57 57 57 57 50 43 43 44 44 57 57 48 48 48 57 57 57 43 43 43 44 44 44 47 43 41 47 57 44 46 42 42 35 28 28 24 20 18 30 15 20 20 25 29 37 32 35 41 44 39 35 32 32 39 40 48 42 43 32 37 32 40 40 28 32 32 43 43 43 48 59 59 59 43 40 30 30 28 32 28 28 28 37 32 43 37 43 37 39 39 46 39 39 32 30 25 31 39 39 39 39 41 40 40 39 37 37 32 32 39 39 43 39 37 28 25 25 25 37 40 47 43 43 39 43 43 43 43 42 35 35 47 59 59 57 57 57 48 50 48 47 47 43 59 39 37 35 39 39 48 57 43 43 40 39 37 37 23 23 24 24 24 22 16 16 16 18 23 28 34 34 30 30 24 31 20 17 17 24 23 25 25 30 32 37 37 36 36 36 34 30 23 19 17 18 20 12 17 12 12 22 23 28 28 30 33 37 19 17 14 18 17 28 28 28 28 34 22 28 17 21 10 12 13 22 12 9 9 9 15 17 14 28 28 34 34 47 34 28 22 13 13 16 19 12 8 8 9 10 10 14 9 10 10 15 22 23 18 18 18 11 11 17 19 15 10 10 11 11 9 13 14 19 19 24 17 21 12 13 10 13 13 26 24 21 8 8 8 8 9 8 12 13 21 20 11 14 11 15 15 23 14 14 12 25 12 12 11 12 15 16 15 22 19 19 11 16 13 13 11 10 10 10 10 15 10 15 10 10 9 8 11 11 14 8 8 8 8 8 8 8 6 7 7 12 13 10 11 10 8 11 9 8 8 9 8 8 10 8 10 8 7 6 6 8 10 10 8 8 8 9 10 9 12 9 10 8 8 6 6 6 9 9 11 9 10 10 8 6 6 6 6 6 6 10 8 8 8 8 8 9 9 9 9 9 9 9 11 10 12 12 11 10 10 12 10 10 10 8 8 11 8 8	Open. Hide. 15 15 26 26 37 30 30 30 28 28 32 39 25 25 12 6 6 7 7 7 6 8 8 10 20 21 27 17 17 19 21 10 10 11 23 26 36 38 38 42 42 42 29 29 34 21 27 14 12 12 34 23 68 68 68 68 68 68 68 50 51 47 47 47 50 57 50 50 47 47 47 47 48 54 50 50 57 50 50 50 50 50 51 51 68 68 57 57 50 50 50 51 51 50 50 68 57 57 57 57 57 57 57 68 68 57 51 50 50 50 50 50 68 68 68 68 68 68 50 50 50 50 50 50 50 50 50 50 50 50 50 50 50 50 50 54 54 57 57 57 68 68 68 68 50 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 62 62 62 68 68 62 68 62 62 62 62 62 62 62 68 68 68 68 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 62 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 43 39 39 43 62 62 62 62 62 62 62 62 59 59 57 57 57 59 59 57 57 57 57 57 57 57 59 59 59 57 54 54 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 68 68 68 68 59 59 59 57 57 57 57 57 57 57 52 52 52 57 59 59 68 59 59 59 59 59 59 59 68 68 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 48 48 48 57 57 57 57 57 57 47 47 47 50 32 32 20 23 23 44 44 47 43 39 39 43 47 46 47 41 41 28 41 31 32 32 43 43 48 43 59 43 48 48 48 48 57 57 57 57 57 43 43 39 39 47 47 47 36 36 33 33 33 37 41 41 37 25 25 11 11 11 18 18 11 16 12 24 15 17 17 19 17 26 15 9 9 9 9 9 10 25 24 34 25 24 16 16 19 22 14 14 9 9 9 13 13 19 29 35 35 28 34 22 22 18 26 20 26 30 23 28 28 27 26 30 37 26 13 10 8 10 8 8 8 20 26 31 35 37 19 15 8 8 8 8 16 31 14 15 13 13 9 9 8 9 9 8 10 10 9 10 10 13 8 8 8 12 8 9 10 9 9 12 12 12 12 12 10 8 8 8 8 8 8 9 10 8 10 8 8 8 8 8 13 14 13 17 15 15 8 8 8 8 8 10 10 8 10 10 11 17 14 14 14 14 19 16 14 10 10 10 14 14 17 16 16 14 11 17 17 23 25 32 30 28 28 10 8 8 6 6 6 8 8 8 10 17 11 8 7 8 8 7 9 11 10 12 14 18 21 14 14 16 19 22 22 18 18 18

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no046_i04.g1 MSMg01no046_i04.g1 CHROMAT_FILE:
MSMg01no046_i04.g1 PHD_FILE: MSMg01no046_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:41 2005
         (435 letters)



>mm_chrX_130228500_130229335
          Length = 836

 Score =  812 bits (420), Expect = 0.0
 Identities = 434/442 (98%), Gaps = 7/442 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccaagtggatcccaaatgccagtttcctaggtgcaacctcatgccaaatgttattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccaagtggatcccaaatgccagtttcctaggtgcaacctcatgccaaatgttattct 260

                                                                       
Query: 61  caccaccaccaccacattcgaaaacaaactgctttcccttcaaaggcactatgatcaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccaccaccaccacattcgaaaacaaactgctttcccttcaaaggcactatgatcaatt 320

                                                                       
Query: 121 cctgcctggatttctcactgttgccactctcatccctaagaaggaggataagagtgacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgcctggatttctcactgttgccactctcatccctaagaaggaggataagagtgacat 380

                                                                       
Query: 181 tccacagctttccagaagaaaggcttttggcaccttgaaaatgggggg-tccccaaatta 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tccacagctttccagaagaaaggcttttggcaccttgaaaatgggggggtccccaaatta 440

                                                                       
Query: 240 gagagcttcacaaaaacaattgaaaaggggacacccatgtttacaaggagagattaaaac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagcttcacaaaaacaattgaaaaggggacacccatgtttacaaggagagattaaaac 500

                                                                       
Query: 300 taggatgctttctttgaagacaaacacatttttatttttatttttattt------atcat 353
           |||||||||||||||||||||||||||||||||||||||||||||||||      |||||
Sbjct: 501 taggatgctttctttgaagacaaacacatttttatttttatttttatttttatttatcat 560

                                                                       
Query: 354 ttttcattatcactactaccaagccataatgccacaacctagagactcccagggacttgg 413
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 ttttcattatcactactaccaagccataatgccacaacctagagaatcccagggacttgg 620

                                 
Query: 414 tacttatgtaactctcttagat 435
           ||||||||||||||||||||||
Sbjct: 621 tacttatgtaactctcttagat 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space:   352302
Effective search space used:   352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information