BAC Information

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BAC

Clone NameMSMg01-046K15
ChromosomeX (Build37)
Map Location 75,951,589 - 75,952,161
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667606, Prkx, Pbsn, OTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1, LOC667679, LOC667684
Downstream gene4921509A18Rik, LOC667700, EG546337, EG629116, LOC636082, EG667736, LOC100041373, EG636104, 2410003J06Rik, LOC667749
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046K15.T7 (MSMg01no046_k15.b1)MSMg01-046K15.TJ (MSMg01no046_k15.g1)
ACCAG276986AG276987
length666735
length of high quality
(start - end)
573 (59 - 631)493 (134 - 626)
definitionCHROMAT_FILE: MSMg01no046_k15.b1 PHD_FILE: MSMg01no046_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:52 2005CHROMAT_FILE: MSMg01no046_k15.g1 PHD_FILE: MSMg01no046_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGGCGCTAAACGACTCCTATTTCAAGAGGATCCGCGGAATTCATACTG
TTCCCCACATGAAGATAAAAGTGAATGACCCATAATACTGACAAATGCAT
CATCTTCTCATCTATTTCTTTTATTCTTTTTGTTTTAAAAAGATAATATT
ATCTCTTCTCATCTATTTCTTTTATTCTTTTTGTTTTAAAAAGATAATAT
TATACACGTTTCCTACTATTAGAATCTGTGGCATACATGAAGTGATAAAG
ACTGAAGGAAGGTACCAGCCACAGATCTAATCCACTTCATTTTGTCCTTT
ACTAATTCTATTTTTGTCTTTTCAATTTCTTCCTTCTGGGCCATTCTCTT
CTACAGTTACCTTGGATTCCAGAATTACATGAGTGAATGATAAACATCTT
TATGACAGAAGGAAATAAAACTACCCTCCAAGCAGCAGCAAACCTTTGAG
GACAGATCATTCCCCAAGTGAATGCAATTACTCATAACAAGGGGATGCAA
CCAAGAGCACTGGAACCCTTCTCATGGGAACATGATGAGATTCCTCTGTT
CAAGTGATCATGGCGATAACATTCTTGAGAGAGTACCTAGTGGAACATGA
ACTGAGATATTGATCAATTAGACCACTAACTTCATCAAGATTACTTGCTC
TCCCAACTATGAATAG
NNNTTTTTTTTNNNNNTTTTNTTTTTTANTTTTNNCTTTNTTNNNNNCNT
CGTTCTATNTTCTATGAAGTGAGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTA
TGGTAATTGAGGGTTTGACTGGGTAGAGTAGCCTGGACTGGAATTTGTAT
TCTCTTAGTGTCTGCATAACATCTGTCCAGGCTCTTCTGGCTTTCATAGT
CTCTGGTGAAAAATCTGGTGTAATTCTGATTGGCTTGCCTTTATATGTTA
CTTGACCTTTTTCCCTTACTGCTTTTATTATTCTATCTTTATTTAGTGCA
TTTGTTGTTCTGATTATTATGTGTTGGGAGGAATTTCTTTTCTGGTCCAG
TCTATTTGGAGTTCTGTAGGCTTCTTGTATGTTCATGGGCATCTCTTTCT
TTAGATTTAAGAAGTTTTCTTCAATAATTTTGTTGAAGATGTTTGCTGGT
CCTTTGAGTTGAATATCTTCATTCTCATCCACTTTTATTATCCGTAGGTT
TGGTCTTCTCATTGTGTCCTGGATTTCCTGGATATTTTGAGTTAGAATCT
TTTTGCATTTTCCGTTTTCTTTGATTGTTGTGCCGATGTTCTCTATGGAA
TCTTCTGCACCTGAGATTCTCTCTTCCATCTCTTGTAGTAGAATTCAAAT
TGATCCATTCCTATCCTCTTGGACTAAGAACCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_k15.b1 MSMg01no046_k15.b1 CHROMAT_FILE:
MSMg01no046_k15.b1 PHD_FILE: MSMg01no046_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:52 2005
         (573 letters)



>mm_chrX_75951389_75952361
          Length = 973

 Score = 1108 bits (573), Expect = 0.0
 Identities = 573/573 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagataaaagtgaatgacccataatactgacaaatgcatcatcttctcatctatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaagataaaagtgaatgacccataatactgacaaatgcatcatcttctcatctatttc 260

                                                                       
Query: 61  ttttattctttttgttttaaaaagataatattatctcttctcatctatttcttttattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttattctttttgttttaaaaagataatattatctcttctcatctatttcttttattct 320

                                                                       
Query: 121 ttttgttttaaaaagataatattatacacgtttcctactattagaatctgtggcatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgttttaaaaagataatattatacacgtttcctactattagaatctgtggcatacat 380

                                                                       
Query: 181 gaagtgataaagactgaaggaaggtaccagccacagatctaatccacttcattttgtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagtgataaagactgaaggaaggtaccagccacagatctaatccacttcattttgtcct 440

                                                                       
Query: 241 ttactaattctatttttgtcttttcaatttcttccttctgggccattctcttctacagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttactaattctatttttgtcttttcaatttcttccttctgggccattctcttctacagtt 500

                                                                       
Query: 301 accttggattccagaattacatgagtgaatgataaacatctttatgacagaaggaaataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accttggattccagaattacatgagtgaatgataaacatctttatgacagaaggaaataa 560

                                                                       
Query: 361 aactaccctccaagcagcagcaaacctttgaggacagatcattccccaagtgaatgcaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactaccctccaagcagcagcaaacctttgaggacagatcattccccaagtgaatgcaat 620

                                                                       
Query: 421 tactcataacaaggggatgcaaccaagagcactggaacccttctcatgggaacatgatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactcataacaaggggatgcaaccaagagcactggaacccttctcatgggaacatgatga 680

                                                                       
Query: 481 gattcctctgttcaagtgatcatggcgataacattcttgagagagtacctagtggaacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattcctctgttcaagtgatcatggcgataacattcttgagagagtacctagtggaacat 740

                                            
Query: 541 gaactgagatattgatcaattagaccactaact 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 gaactgagatattgatcaattagaccactaact 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)