BAC Information

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BAC

Clone NameMSMg01-046O19
ChromosomeX (Build37)
Map Location 83,773,450 - 83,923,458
singlet/doubletdoublet
Overlap genenone
Upstream geneMap3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneIl1rapl1, LOC667876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046O19.T7 (MSMg01no046_o19.b1)MSMg01-046O19.TJ (MSMg01no046_o19.g1)
ACCAG277181AG277182
length685692
length of high quality
(start - end)		614 (36 - 649)618 (73 - 690)
definitionCHROMAT_FILE: MSMg01no046_o19.b1 PHD_FILE: MSMg01no046_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:11 2005CHROMAT_FILE: MSMg01no046_o19.g1 PHD_FILE: MSMg01no046_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,773,450 - 83,774,059)(83,922,918 - 83,923,458)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATA
TAATTTCACTAAATTTAAAATTGGCAGTGCAGGAGCTTTTTATCCATTGG
TTCAATTATTTCTTAGTCATGTTGAATATGAGAAAGCATAAGGAATTTCT
GGCTGAGAATAATGACTGATGAACATGAAAACAGTTTTGGCTTACATTTA
GGTACCAGAAAACTCATCAGCAAGAATATAAAAGTGAGTCTAGTCATAAA
AGTGAAAATACCACTGGCTCAATAAGCCAACAATTATACATGAATTGCCA
ATTTTATTCTGCCCAAAATAGGTGCCACCTATTGCTTGATGGCACAAATA
AGCATGTTAGGGAGGAATAAACTGTTGTCAGTTGGGCAGGGACCTTTGAA
AACATTCCTTCAAAAATTGGTCTGCCATCTGGATAGAAGGTTTACAGCCT
CAACACTGCATGATTGTCTATTAAAAGGACACATGGATGGGAGACAATGA
GGAAGAATAAATATGAGCATTCTGTACTTACCTAGCCAAAACCTGAGCCT
CTCCAGCAAGACCAGACGCTGGAATCTTTGTCAACCCATCATGTAAAAGA
CCTGATGGAAACAAGCTCTGGAACGCAGCAGAGGAATTGTGTTTGCTGCC
CAATAGTTGTGCTATTCCATATGAAAAGGAAAGCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTAAAATTTCAGATACTAACCCTCTGT
CTGATGTAGGTTTTAACCTTATTTTGAAATTTACTTTGATCCATAAAGTG
ATTTAGCCAGTGGAGTGCTAATACTCAGTGTTATACTTAGTAAGATCATA
ATAGTAGTGGTGTGCTAGACAGGATAAGCTAAGAATAAAGAGTATAGGTA
TGTAATCTGGAAATAGTTATGCTCTAAAGAACACATAACAAAATAATTAA
TATAGAAGTTTTGCATCAATACATTTAATGGTGCTCATCTACTAAATGTG
CTTTTCTTTACAGTAAATAAGTTTATTGCATCCTGAAATGCAGCTTTAGG
ACAATTTTTGAAAGTTTTGTTTTGGTTTGATTCCTTTGTTATTTTGTTTT
GTTTTCTGACTTTTTTTTCTTTTACATTGTCTTTGTAATTACTGATTATT
TCTGACAGGCAGTAATCAGTCCCAGCAGTACTATATCTCAGAAATAAGTA
GCTGCCATATGTTTTAATTTCTTGTTATCTCAAGCATTTAATAGACTTGT
GCCTTCTTATCATAATCATCTTTGGGGAGGTGAATTTTCTAATTATTCAA
ACGTCTCCTAAAAGTAAATACCTTATTTCCTTAAAAATGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_o19.b1 MSMg01no046_o19.b1 CHROMAT_FILE:
MSMg01no046_o19.b1 PHD_FILE: MSMg01no046_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:11 2005
         (614 letters)



>mm_chrX_83773246_83774259
          Length = 1014

 Score = 1156 bits (598), Expect = 0.0
 Identities = 607/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatataatttcactaaatttaaaattggcagtgcaggagctttttatccattg 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatataatttcagtaaatttaaaattggcagtgcaggagctttttatccattg 264

                                                                       
Query: 65  gttcaattatttcttagtcatgttgaatatgagaaagcataaggaatttctggctgagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttcaattatttcttagtcatgttgaatatgagaaagcataaggaatttctggctgagaa 324

                                                                       
Query: 125 taatgactgatgaacatgaaaacagttttggcttacatttaggtaccagaaaactcatca 184
           | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatgactgatgaacatgaaaagagttttggcttacatttaggtaccagaaaactcatca 384

                                                                       
Query: 185 gcaagaatataaaagtgagtctagtcataaaagtgaaaataccactggctcaataagcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaagaatataaaagtgagtctagtcataaaagtgaaaataccactggctcaataagcca 444

                                                                       
Query: 245 acaattatacatgaattgccaattttattctgcccaaaataggtgccacctattgcttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaattatacatgaattgccaattttattctgcccaaaataggtgccacctattgcttga 504

                                                                       
Query: 305 tggcacaaataagcatgttagggaggaataaactgttgtcagttgggcagggacctttga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggcacaaataagcatgttagggaggaataaactgttgtcagttgggcagggacctttga 564

                                                                       
Query: 365 aaacattccttcaaaaattggtctgccatctggatagaaggtttacagcctcaacactgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaacattccttcaaaaattggtctgccatctggatagaaggtttacagcctcaacactgc 624

                                                                       
Query: 425 atgattgtctattaaaaggacacatggatgggagacaatgaggaagaataaatatgagca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgattgtctattaaaaggacacatggatgggagacaatgaggaagaataaatatgagca 684

                                                                       
Query: 485 ttctgtacttacctagccaaaacctgagcctctccagcaagaccagacgctggaatcttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttctgtacttacctagccaaaacctgagcctctccagcaagaccagacgctggaatcttt 744

                                                                       
Query: 545 gtcaacccatcatgtaaaagacctgatggaaacaagctctggaacgcagcagaggaattg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtcaacccatcatgtaaaagacctgatggaaacaagctctggaacgcagcagaggaattg 804

                     
Query: 605 tgtttgctgc 614
           ||||||||||
Sbjct: 805 tgtttgctgc 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_o19.g1 MSMg01no046_o19.g1 CHROMAT_FILE:
MSMg01no046_o19.g1 PHD_FILE: MSMg01no046_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:11 2005
         (618 letters)



>mm_chrX_83922918_83923935
          Length = 1018

 Score = 1038 bits (537), Expect = 0.0
 Identities = 540/541 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   aaaatttcagatactaaccctctgtctgatgtaggttttaaccttattttgaaatttact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaatttcagatactaaccctctgtctgatgtaggttttaaccttattttgaaatttact 482

                                                                       
Query: 64  ttgatccataaagtgatttagccagtggagtgctaatactcagtgttatacttagtaaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgatccataaagtgatttagccagtggagtgctaatactcagtgttatacttagtaaga 422

                                                                       
Query: 124 tcataatagtagtggtgtgctagacaggataagctaagaataaagagtataggtatgtaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcataatagtagtggtgtgctagacaggataagctaagaataaagagtataggtatgtaa 362

                                                                       
Query: 184 tctggaaatagttatgctctaaagaacacataacaaaataattaatatagaagttttgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctggaaatagttatgctctaaagaacacataacaaaataattaatatagaagttttgca 302

                                                                       
Query: 244 tcaatacatttaatggtgctcatctactaaatgtgcttttctttacagtaaataagttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaatacatttaatggtgctcatctactaaatgtgcttttctttacagtaaataagttta 242

                                                                       
Query: 304 ttgcatcctgaaatgcagctttaggacaatttttgaaagttttgttttggtttgattcct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgcatcctgaaatgcagctttaggacaatttttgaaagttttgttttggtttgattcct 182

                                                                       
Query: 364 ttgttattttgttttgttttctgacttttttttcttttacattgtctttgtaattactga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgttattttgttttgttttctgacttttttttcttttacattgtctttgtaattactga 122

                                                                       
Query: 424 ttatttctgacaggcagtaatcagtcccagcagtactatatctcagaaataagtagctgc 483
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 ttatttctgacaggcagtaatcagtcccagcattactatatctcagaaataagtagctgc 62

                                                                       
Query: 484 catatgttttaatttcttgttatctcaagcatttaatagacttgtgccttcttatcataa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catatgttttaatttcttgttatctcaagcatttaatagacttgtgccttcttatcataa 2

            
Query: 544 t 544
           |
Sbjct: 1   t 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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