BAC Information

Click to search

BAC

Clone NameMSMg01-047E17
ChromosomeX (Build37)
Map Location 101,656,878 - 101,738,153
singlet/doubletdoublet
Overlap geneUprt, Zdhhc15
Upstream geneTsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
Downstream geneMagee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik, LOC622202, LOC100043213, LOC668458, Cypt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047E17.T7 (MSMg01no047_e17.b1)MSMg01-047E17.TJ (MSMg01no047_e17.g1)
ACCAG277431AG277432
length716723
length of high quality
(start - end)		646 (45 - 690)644 (77 - 720)
definitionCHROMAT_FILE: MSMg01no047_e17.b1 PHD_FILE: MSMg01no047_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:36 2005CHROMAT_FILE: MSMg01no047_e17.g1 PHD_FILE: MSMg01no047_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,656,878 - 101,657,520)(101,737,720 - 101,738,153)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTAGATGATCATGGGCAACGTTTTGAGACTTCTGGCGAGTTGCAT
TGATCAGTTTCTGTTTAGCCATTGCTTTAAGACATCATTGCCTTCATGAA
TTCTTTTGGCATTGTCACAATTGTGACAAAGGGAGAGAGAACTCACATTT
GCTGAGTGTTCTTCATTTGTTAATAATGTACATGCCAGTTTTGTTTCATT
CTCATGATAAGCCTGAGAGAGGGGTAAAAATCACATGATTTTCAATATCC
TCAGGAGAAAAAGGAGCCTCAAGGCAATTATTTTGGCTTCACAATTTGGA
AAGCATAAGGAAACAAAATCCAGCTCTAACTAAGGAGCTCATTTATTTCT
GCTCTGCCAAATTGTGAGGCTAGTAATGGAAATATGACTCATAATGTTAG
AGGCCAGGCAGCCTGGGAGCAAATCAGAGTATGTTGCAAATAGTCTGAAA
TGAGGCCCGCCTTTCAAAGGGAGGGGCAGCCTGAATGCTGCTGTGGCAGT
TACAGGGGGTTGGGGGAATTCCACTCCTGCATTCCAATTGTTCTCTCTAA
TGGTTACTTGGGTCTGATCAGATCCGTTTTCTCAAAGAAGCAGCCCTTTC
ATCCTGCTATTACTTTATTGATTTTCAGTTGTTTTTTTTGGTGGGGGGCA
TCTTCAGAAGTTTATT

CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACACACAGAGCTATAAAGAC
TGTAAGGTGTGTATAGATAGCAACTACAGTGATATTTGTAAAATATCCAA
ACTGAACTCAACCTAAATATCTATTCATAGAATAGTTGAATACATTAATT
ATAGTTTTGTATATATTTTCCTTTATTTTAATGTGAAGAGTTTTTTTTAA
TTAAAGAAAAATAAGGACAAAATGAATACCCATGTTTGCAACTTAAAATT
AACAGACACTGGAGATGAAGAGCTGGCTCAGTAGTTAAGAGCACAGGCTT
CTTTCTAGAGGACCCAGATTCAGTTCCCAGGAATCACATAGTGGCTTATA
ACCAACTCTTACTCCATTTTCAGGAGATCTGGCCAATATTTGCACTGTAT
GCACACGGGGCACAGACATACCTGCAGAAACACACACACACACACATGCC
TAAAATAAAATCTCAAAAACAACTTAACAAGCATGAACTTTTTTATTTTG
TTTCAGTTTTGATAAATAAAACATTTTCATAATCTTTACACAAAGATTCA
CTGATTCCACATAATATTTTCTTCAGACTGAAACCAATTGCAAAATATAC
AGCATACAAAAATTAACATCTTTAATTTAATGATTTCTTGCAAATCATTA
AGGAAAGAAAAATACAACAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_e17.b1 MSMg01no047_e17.b1 CHROMAT_FILE:
MSMg01no047_e17.b1 PHD_FILE: MSMg01no047_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:36 2005
         (646 letters)



>mm_chrX_101656675_101657720
          Length = 1046

 Score = 1236 bits (639), Expect = 0.0
 Identities = 642/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtagatgatcatgggcaacgttttgagacttctggcgagttgcattgatcag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtagatgatcatgggcaacgttttgagacttctggcgagttgcattgatcag 263

                                                                       
Query: 64  tttctgtttagccattgctttaagacatcattgccttcatgaattcttttggcattgtca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttctgtttagccattgctttaagacatcattgccttcatgaattcttttggcattgtca 323

                                                                       
Query: 124 caattgtgacaaagggagagagaactcacatttgctgagtgttcttcatttgttaataat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caattgtgacaaagggagagagaactcacatttgctgagtgttcttcatttgttaataat 383

                                                                       
Query: 184 gtacatgccagttttgtttcattctcatgataagcctgagagaggggtaaaaatcacatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtacatgccagttttgtttcattctcatgataagcctgagagaggggtaaaaatcacatg 443

                                                                       
Query: 244 attttcaatatcctcaggagaaaaaggagcctcaaggcaattattttggcttcacaattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttcaatatcctcaggagaaaaaggagcctcaaggcaattattttggcttcacaattt 503

                                                                       
Query: 304 ggaaagcataaggaaacaaaatccagctctaactaaggagctcatttatttctgctctgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaaagcataaggaaacaaaatccagctctaactaaggagctcatttatttctgctctgc 563

                                                                       
Query: 364 caaattgtgaggctagtaatggaaatatgactcataatgttagaggccaggcagcctggg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caaattgtgaggctagtaatggaaatatgactcataatgttagaggccaggcagcctggg 623

                                                                       
Query: 424 agcaaatcagagtatgttgcaaatagtctgaaatgaggcccgcctttcaaagggaggggc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agcaaatcagagtatgttgcaaatagtctgaaatgaggcccgcctttcaaagggaggggc 683

                                                                       
Query: 484 agcctgaatgctgctgtggcagttacagggggttgggggaattccactcctgcattccaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agcctgaatgctgctgtggcagttacagggggttgggggaattccactcctgcattccaa 743

                                                                       
Query: 544 ttgttctctctaatggttacttgggtctgatcagatccgttttctcaaagaagcagccct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttgttctctctaatggttacttgggtctgatcagatccgttttctcaaagaagcagccct 803

                                                      
Query: 604 ttcatcctgctattactttattgattttcagttgttttttttg 646
           ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttcctcctgctattactttattgattttcagttgttttttttg 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no047_e17.g1 MSMg01no047_e17.g1 CHROMAT_FILE:
MSMg01no047_e17.g1 PHD_FILE: MSMg01no047_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:36 2005
         (644 letters)



>mm_chrX_101737720_101738763
          Length = 1044

 Score =  832 bits (430), Expect = 0.0
 Identities = 433/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacacacagagctataaagactgtaaggtgtgtatagatagcaactacagtgatatt 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 434 caggacacacagagctataaagactgtaaggtatgtatagatagcaactacagtgatatt 375

                                                                       
Query: 61  tgtaaaatatccaaactgaactcaacctaaatatctattcatagaatagttgaatacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgtaaaatatccaaactgaactcaacctaaatatctattcatagaatagttgaatacatt 315

                                                                       
Query: 121 aattatagttttgtatatattttcctttattttaatgtgaagagttttttttaattaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aattatagttttgtatatattttcctttattttaatgtgaagagttttttttaattaaag 255

                                                                       
Query: 181 aaaaataaggacaaaatgaatacccatgtttgcaacttaaaattaacagacactggagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaaaataaggacaaaatgaatacccatgtttgcaacttaaaattaacagacactggagat 195

                                                                       
Query: 241 gaagagctggctcagtagttaagagcacaggcttctttctagaggacccagattcagttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaagagctggctcagtagttaagagcacaggcttctttctagaggacccagattcagttc 135

                                                                       
Query: 301 ccaggaatcacatagtggcttataaccaactcttactccattttcaggagatctggccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ccaggaatcacatagtggcttataaccaactcttactccattttcaggagatctggccaa 75

                                                                       
Query: 361 tatttgcactgtatgcacacggggcacagacatacctgcagaaacacacacacacacaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  tatttgcactgtatgcacacggggcacagacatacctgcagaaacacacacacacacaca 15

                         
Query: 421 tgcctaaaataaaa 434
           ||||||||||||||
Sbjct: 14  tgcctaaaataaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |