BAC Information

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BAC

Clone NameMSMg01-048B03
ChromosomeX (Build37)
Map Location 153,098,275 - 153,099,045
singlet/doubletsinglet
Overlap genenone
Upstream gene4930503H13Rik
Downstream geneLOC640803, LOC434885, Phex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048B03.T7 (MSMg01no048_b03.b1)MSMg01-048B03.TJ (MSMg01no048_b03.g1)
ACCAG277929AG277930
length1,2451,210
length of high quality
(start - end)		703 (42 - 744)777 (68 - 844)
definitionCHROMAT_FILE: MSMg01no048_b03.b1 PHD_FILE: MSMg01no048_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:35 2005CHROMAT_FILE: MSMg01no048_b03.g1 PHD_FILE: MSMg01no048_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCATTGGGCCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATATTTTCAATGCACCCATTAAGTCTCCTTTAATGTCCTTGCTTAAGG
ATGTTCTGCACTAAGGGAGTTGTAACACCCACTTTTGTCTATTGTGGAAC
AGTGAACCATGCTGGGAAACTTGGTAAGGTAGAGTGGGTCTGAGACCCAG
CACTCGGGTACACACCTGAGACAGCAGGTGCCTCCCTGCTCCCTACTAGA
TTCCTGGCCAGGAACATGTGTCCATAATCCTCACAGCAATCACAAAGCCC
AGAACAGAGTTCTCCATACTAATAAGCTTCCCTTCCCAGACATTCCTTCC
TCCTAAAGGTATTTAACCTCTGGTACACCCTGAGGAATTGGTATGCATCC
ATTTTCCACGATGAACACTCAATAAATGGTATGGATAAATGTGGACTATC
TTTTCCATCGAAACCTCCATGGGGAGCATGGAGAAGACCTTCGCCTGTAG
AGCCACAGCCTAAGTCTCCTGTAGAAGGCCTCTTTGCACTTCCAGAAAGC
CATTGCCAAGCTAAGGACAATCATTGATGAGCTAAGCCAGAGTTGCATTT
CCCATCCTGGCCTTGTTGAAGGCCATGGAACCTTGGTCCTTCATTCTAAC
TCTTCTGTGCGACACTCTAGCAGTGACTAGATGTCTGGGAATCAGGGAAA
CCTAACTTTGGCCTCCCCCATCTTAGACTGCATCCTTCCACCCCTTGAGC
AGTATCTCGGTGCTTCCCTAAAGCCGAGCACCATAGTGTGGTATGTGTCA
TCTCCCCAGTGGCATGTCCCACATGCTAACAGTGGAACACAATTCGGACC
CACCGTCTATAACGTATTTTCCGCGGAAGACAAAGTCTCAGTTATGGTTA
TATTGTGGTGGAATAAATACTCTGATCATGATATCTTGTTTTTTACCTCA
TTTTTTATTTCGTCTCAACTTATTGTTTTTTGACGTTTATCCTTATTTTT
TTCCAGGTTTATACAATATGTTTCTTTCTCATTTTATTATTTTTTTGTTT
TTTTTATATTATAATTTTTTCTTCTTCTTCTTTTTTTTTATATCTCATTC
TTTCTTTATCTTTTTTTTTCTTTTTTTTTACCTATTTCTTTCTCTGTTTT
TTATTCTATTGTATTCTTATTTTTTTCCTCTCTTTTCCTTTTCTCTTTTA
CACTTCTTCTTATATTTTCTTTCTCTTCTTACTTTTTCTTTTTTT

NNNTTTTTGTATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTAATTATTTTGGAGTTATTTAAAATGTTC
TGTTTATCTTATCTTTTGAACTTAGAACTCCTCTCATGTATCTAAGTCTA
ATTCTCGTTTTATTTTTTATTACTTAGAATTTGTACTACAAAATTTCACT
TTCACTAGAAAGAACAAACAAAAGCACAGACATATGAAGATGCCTTGGTT
TTAATAATGCCACGCTGCCATGCTGTCAAAAAAGAACTGACCAGGAAAGT
ACATACATATGACTCAAAGATGTTATTTTAAAATTCTTTTACGATTATCG
ATAGCTTCTTATAAGTAAGAATTTTGCTCCTCTCAGAATTCAGTTTCTAG
AAGCAAAAGATTCCTTTTGTAATTTATTTAGTTTCCTAAATATGTAGTTG
AGGAAATTATCTGATAGAAACAGCAGTGCCTTGCTTTCATATATAGTGGG
TAACTCTGCAAATGAGTCTGTTTTATTAAAGAATTAGCGGACATTTGAAG
GTTTCTATAATAACACTTTTAACTAAATCTCCCTATCTATACTCCAGCAA
TTTAGAGATAGTTTAGGAAATTTTATTCAAACAAATGGAGGATTAACTGG
TTATCATTTGTGTGATAAATCCCAACATCAGAAGGCTACCCATTTCCATT
GACTCCCTAATAAGAACATGCTACATTATTCCACAATTTATTTGTCACAC
AAGTGAAGTAAGTTCTCACTTCCCATTTTACAGCCAGTGGGGCTAATATC
TAATGGAAAGTTGATAAATAATATATCCATTTTTATTACTTATTTCTTTA
TTCTGTCAGTCATTCAGTTAGCCATCATTTAGTATTTTTTACTAAAACCA
AGGTACCATACCTAATGCTACAAAGATGAAAGAGCTTGCTATTTAATATG
TAAGAAATGCTTATAATGAAAATTTGTTTACTACAGGGAACTCCAAAAAT
TTCCAAATTATTAAAAATTTTCCCCAATTTCAAAAAATTTTTATCAAAAT
GGGTGGCAATCCCCTATTTCAAAAAAACCACGGTTTCTACTTGGGGGGGT
TTTGGGCTTCCCAAAACCTTTTAAAAGGGGATTTTTTAAGGTTTACCGGT
AATAAATTCTTCCCTAATAAAAACATTTCTTTTTCTTTGTGTCCCTCCCA
CAAGAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_b03.g1 MSMg01no048_b03.g1 CHROMAT_FILE:
MSMg01no048_b03.g1 PHD_FILE: MSMg01no048_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:35 2005
         (777 letters)



>mm_chrX_153098068_153099245
          Length = 1178

 Score = 1460 bits (755), Expect = 0.0
 Identities = 767/771 (99%), Gaps = 1/771 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttattttggagttatttaaaatgttctgtttatcttatcttttgaacttagaactcctct 67
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 978 ttattttggagttatttaaaatgttctgtttatattatcttttgaacttagaactcctct 919

                                                                       
Query: 68  catgtatctaagtctaattctcgttttattttttattacttagaatttgtactac-aaaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 918 catgtatctaagtctaattctcgttttattttttattacttagaatttgtactacaaaaa 859

                                                                       
Query: 127 tttcactttcactagaaagaacaaacaaaagcacagacatatgaagatgccttggtttta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tttcactttcactagaaagaacaaacaaaagcacagacatatgaagatgccttggtttta 799

                                                                       
Query: 187 ataatgccacgctgccatgctgtcaaaaaagaactgaccaggaaagtacatacatatgac 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ataatgccacgctgccatgctgtcaaaaaagaactgaccaggaaagtacatacatatgac 739

                                                                       
Query: 247 tcaaagatgttattttaaaattcttttacgattatcgatagcttcttataagtaagaatt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tcaaagatgttattttaaaattcttttacgattatcgatagcttcttataagtaagaatt 679

                                                                       
Query: 307 ttgctcctctcagaattcagtttctagaagcaaaagattccttttgtaatttatttagtt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttgctcctctcagaattcagtttctagaagcaaaagattccttttgtaatttatttagtt 619

                                                                       
Query: 367 tcctaaatatgtagttgaggaaattatctgatagaaacagcagtgccttgctttcatata 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcctaaatatgtagttgaggaaattatctgatagaaacagcagtgccttgctttcatata 559

                                                                       
Query: 427 tagtgggtaactctgcaaatgagtctgttttattaaagaattagcggacatttgaaggtt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tagtgggtaactctgcaaatgagtctgttttattaaagaattagcggacatttgaaggtt 499

                                                                       
Query: 487 tctataataacacttttaactaaatctccctatctatactccagcaatttagagatagtt 546
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 tctataataacacttttaactaaatctccctatctatactcaagcaatttagagatagtt 439

                                                                       
Query: 547 taggaaattttattcaaacaaatggaggattaactggttatcatttgtgtgataaatccc 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 taggaaattttattcaaacaaatggaggattaactggttatcatttgtgtgataaatccc 379

                                                                       
Query: 607 aacatcagaaggctacccatttccattgactccctaataagaacatgctacattattcca 666
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 378 aacatcagaaggctacccatttcaattgactccctaataagaacatgctacattattcca 319

                                                                       
Query: 667 caatttatttgtcacacaagtgaagtaagttctcacttcccattttacagccagtggggc 726
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caatttatttgtcacacaagtgaagtaagttctcacttcccattttacagccagtggggc 259

                                                              
Query: 727 taatatctaatggaaagttgataaataatatatccatttttattacttatt 777
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 taatatctaatggaaagttgataaataatatatccatttttattacttatt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 777
Length of database: 1178
Length adjustment: 10
Effective length of query: 767
Effective length of database: 1168
Effective search space:   895856
Effective search space used:   895856
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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