BAC Information

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BAC

Clone NameMSMg01-048E22
ChromosomeX (Build37)
Map Location 161,105,213 - 161,105,947
singlet/doubletsinglet
Overlap genenone
Upstream gene1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
Downstream geneMospd2, Fancb, LOC627045, Glra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048E22.T7 (MSMg01no048_e22.b1)MSMg01-048E22.TJ (MSMg01no048_e22.g1)
ACCAG278106AG278107
length1,2431,212
length of high quality
(start - end)		741 (50 - 790)716 (69 - 784)
definitionCHROMAT_FILE: MSMg01no048_e22.b1 PHD_FILE: MSMg01no048_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:06 2005CHROMAT_FILE: MSMg01no048_e22.g1 PHD_FILE: MSMg01no048_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTATTTNTNNNCCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTGTATGTAGATTTACCACTTGTGGAATAAAAGCCATATG
TCTCCTCTGGTGGTGTTGGTAATTCTTTTTAATTTATTGCTTTTATTTTT
GAGATTATACTTACATCATTTCTGCCTTCTCTTATCTCACTACAAACCCT
CCAGTAAATTCATACTTGCTCTTTTAAACTTTATAGTCATTTTCCATTAA
TTGTTGTTCCATACATAACACACACACACACACACACACACACACACACA
CACACACACACACACACACCTTACCAACAGGTCTGCCTAAGCAAGAGCCA
GACAAAGGAAAACTCTGAGGAAACATCTTCTTCTGTAGTTGAAAGACATC
TCCAGACTCTCTTGTCTTACCGTTGTATATTCTTCATAGACGTTGCTGTC
ATTTACTCTTCCCATGCTCACCCAGGGCAGAATCAAGAACAAATCAAGTA
TTCTGCTGTTATTCTTGCTGTTATGCAGGTTGTAAGAGCGAGTAGGGCGT
ATAGAGAAATGTAGAGGAGCAATTACCTACAACTGAGGAAGACTTCACTG
GATACCAGCATCCACAAGTTCACATCATCATTGATACATAATAATAAGCA
GCCAAGGTTCACTAAGTAGTGGAAGAAGGGCTCAAAATAAAACAGCAGAT
TAACACACTGACAGCCATCAGAACTGAGGTATGTATAGATGAAATACAGA
GTGCCTTCACTTTCACACTATACAAAGAGCATACATCTCANAATGAAGAT
TCTACACCTCAAAAAAATCTCCTTAGAAATTAAAAATAACTGTAACTCAT
CTTCTGAGTGTAGATTCCAACACACTGAAGCAGGACCTCAAAGAGATAAT
TGTGCCCCCCTGTTCATTGCAGTGTTTTTCACTACCAAAAACATGGAATC
AGTTTTAACTTTCCACTGATGATGAAAACGGGCCCAAATTAAACCTTTTT
AAAGTATTACCAGCTGGGTATGTCAAACCCCCCTAAGGGCCTAATAAATA
AAGGGAGGAAAGAATGACCCTTCAATTGATAAAACCTGCGGACCTCTATA
ATTTTTTACCTCCCTAAAAAAACGGGGTAAATTATTATTTATATTATGGG
GGGTTATTTTGGTGTTGGTGCGGGCTTATATTAACACCTTTCTTCTTCTA
TTTATTCTTTTTTTATTATTTTTTCATTATTCTTCTTTATTTT

TTTTTTTAGGAGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTCTTTGTTTATCCCCATACCCCATTTTTGA
AATAGGGTTACTTGGTTCTCTGGAGCCTAGCTTCTTGAGTTCTTTGTATA
TATTGGATGGATATTAGCCCTCTATCAGATGTAGGGTTGCTAAAGATCTT
TCCCCAATTTGTTGGTTGCCATTTTGTCCTAATTGACAGTGTCCTTTGCT
TTACAAAAACTTTGTAATTTTATGAGGTCCCAATCAACAATTCTTGATCT
TAGAGCACACGCTATTGGTGTTCTGTTTGGGAAATTTTCCCCTGTGCTCA
TGTGTTCAAGGCTCTTCCCCAATTTCTCTTCTATTAGTTTCAGTGTATCT
GGTTTTATGTAGAGGTCCTTGATCCACTTAGACTTGAGCTTTGTACAAAG
AGATAAGAACAGATTGGTTTGCATTCTTCTACATGCAAACTGCCAGTTGA
ACCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCCACTGGATGGTTTT
TAGATCCTTTGTCAAAGATCAAGTGACCATACGTGTGTGGGCTCATTTCT
GGGTCTTCAATTCTATTCCATTGATCTACCTGCCTGTCCCTGTACCAATA
CCATGCAGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTAATCACA
ATTGCTCTGTAGTACAGCTTGAGGCCAGGGATGCTGATTCCCCCAGAAGT
TCTTTTTATTTGTTGAGAATAGTTTTTTATATCCTGCGTTTTTGNCATTT
TAAATGAATTTGAAAATTGCTCTTTCTAACTCCATGATAAATTGAGTTGG
AATTTTGATGGGGATTTGCTTGAATCTATAAATTGTTTTGGCAGGGATAT
CCATTTTTTTTATTTTAATCTTGCCATTTCTTGTATTTCTTTTATTCCTT
CTTTTTCCAAGTTTTCTTTTTGAATTTTTTTCTTTAAAAATTTTAAAATA
TTTGTTCTTCCCCTTCTTTTTTTTTTTTTTTTCTAATTTTCCCTTTACTT
TTTTTTTTTTTTTCTTTCTTCTTTTTATTCTTTCTTTTTTTTCTTTTTTC
CTTTTTTTCTTTTTTTCTTTTTTTTACTTTTTTCTCTTTTTTTTTTCTTA
TCTCATTATCTTTCTAACTTTTTTTTTTTTTTTATTTCTTTTTTATTTTT
TTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_e22.b1 MSMg01no048_e22.b1 CHROMAT_FILE:
MSMg01no048_e22.b1 PHD_FILE: MSMg01no048_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:06 2005
         (741 letters)



>mm_chrX_161105007_161106147
          Length = 1141

 Score = 1321 bits (683), Expect = 0.0
 Identities = 723/737 (98%), Gaps = 2/737 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgtatgtagatttaccacttgtggaataaaagccatatgtctcctctggtgg 64
           |||||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||||
Sbjct: 207 gaattccttgtatgtagatttagcacatgtggaataaaagccgtgtgtctcctctggtgg 266

                                                                       
Query: 65  tgttggtaattctttttaatttattgcttttatttttgagattatacttacatcatttct 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgttgggaattctttttaatttattgcttttatttttgagattatacttacatcatttct 326

                                                                       
Query: 125 gccttctcttatctcactacaaaccctccagtaaattcatacttgctcttttaaacttta 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 327 gccttctcttatctcactacaaaccctccagtaaattcatacttgctcttttaaacgtta 386

                                                                       
Query: 185 tagtcattttccattaattgttgttccatacataacacacacacacacacacacacacac 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tagtcatttttcattaattgttgttccatacataacacacacacacacacacacacacac 446

                                                                       
Query: 245 acacacacacacacacacacacacaccttaccaacaggtctgcctaagcaagagccagac 304
           ||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||| |
Sbjct: 447 acacacacacacacacacacacac--cttaccaacaggtctgcgtaagcaagagccaggc 504

                                                                       
Query: 305 aaaggaaaactctgaggaaacatcttcttctgtagttgaaagacatctccagactctctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaggaaaactctgaggaaacatcttcttctgtagttgaaagacatctccagactctctt 564

                                                                       
Query: 365 gtcttaccgttgtatattcttcatagacgttgctgtcatttactcttcccatgctcaccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcttaccgttgtatattcttcatagacgttgctgtcatttactcttcccatgctcaccc 624

                                                                       
Query: 425 agggcagaatcaagaacaaatcaagtattctgctgttattcttgctgttatgcaggttgt 484
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agggcagaatcaagaccaaatcaagtattctgctgttattcttgctgttatgcaggttgt 684

                                                                       
Query: 485 aagagcgagtagggcgtatagagaaatgtagaggagcaattacctacaactgaggaagac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagagcgagtagggcgtatagagaaatgtagaggagcaattacctacaactgaggaagac 744

                                                                       
Query: 545 ttcactggataccagcatccacaagttcacatcatcattgatacataataataagcagcc 604
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcactggatactagcatccacaagttcacatcatcattgatacataataataagcagcc 804

                                                                       
Query: 605 aaggttcactaagtagtggaagaagggctcaaaataaaacagcagattaacacactgaca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaggttcactaagtagtggaagaagggctcaaaataaaacagcagattaacacactgaca 864

                                                                       
Query: 665 gccatcagaactgaggtatgtatagatgaaatacagagtgccttcactttcacactatac 724
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gtcatcagaactgaggtatgtatagatgaaatacagagtgccttcactttcacactatac 924

                            
Query: 725 aaagagcatacatctca 741
           |||||||||||||||||
Sbjct: 925 aaagagcatacatctca 941


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 741
Length of database: 1141
Length adjustment: 10
Effective length of query: 731
Effective length of database: 1131
Effective search space:   826761
Effective search space used:   826761
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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