BAC Information

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BAC

Clone NameMSMg01-048J01
ChromosomeX (Build37)
Map Location 18,126,436 - 18,127,119
singlet/doubletsinglet
Overlap genenone
Upstream geneFundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik
Downstream geneLOC100043098, EG628855, LOC385333, EG628871, LOC100043953, BC049702
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048J01.T7 (MSMg01no048_j01.b1)MSMg01-048J01.TJ (MSMg01no048_j01.g1)
ACCAG278300AG278301
length1,1931,249
length of high quality
(start - end)
685 (76 - 760)647 (78 - 724)
definitionCHROMAT_FILE: MSMg01no048_j01.b1 PHD_FILE: MSMg01no048_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:39 2005CHROMAT_FILE: MSMg01no048_j01.g1 PHD_FILE: MSMg01no048_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTCA
TTCGAAGACAGCCATTTAAACATTTTAGATGTTTATAACACTTGAATATC
ATCCTTAAAATAGTTGTGACCTTGTAGGGGAGTTGCCCTAACATGTCATT
CTTTCCAGAATATGAGCAAACTTGAAAAGTGAAATGTAACTGCTTTGAGC
TTGAAAATCTGTGAAATATGTTGAAAGGTTAGATAAATTCTCTCAGTTCT
GATGGGTGTCATCTTTGATTTATTCTTTGCCTTCACCTACAGTGAACACC
TCTGTTTTACTTGGGTGACAAACTTCTACTCTAAATACTGACTTAATTAT
GTTTCTGAATATTTGAGAAAATGAACAAAAGTTTCTCAGTTTTTATAAAG
CTAAAACTAATTACAATGCTTAAATCTATCTATTTAAAATGTTTTGATTG
TCACCATTACAGTTTGGATGTCAAATGTCTTCCAAAGATGTATGTTGAAG
TTTTATTCCTGTCTTAGTGGTCCTATCAGGAGAGGGTAGGAACTCAGGAA
ATGGAGAGGGTCTAGTTAGAGGAATTAAATCACTGACCCTACCTCCTAAA
TTTATAGAGCTATGCTAACAAAAAATATAGTATGGCACAAAATCAGACAT
ATAAACTAATGAAAAAAAATCAAAACCTAAATATGTTAAGTTCAGACACT
TACTGTTTGGTAAAGATGTGGCAAACATAAGGTGGACAAACGAAAGCATC
TTCAACAAATGGTGCTAGAAAAACTGGATGTCCACATGTATAGGAATGAA
ATTAGACTCACATCTATCACCTTGCACACAAACTAACTCCACACAGATCA
CAGATCTGACTAAGAAACCTGAAACTGCTAGATGAAAGCATAAGCAGTAC
CCTACACGATAGAGGTGTAGGAACAGCCATTTTTGAATAAGACTACTTTT
GCCTAAAAGTAAGATCAACAATTGACCAGTGAGACCTCTTTAAACTATAA
AAACTCTGTGCAGCTAGGAAAAAAAATCTATCCGGGAAAAAAAACATAAC
CCCATAAAATGGGAAGAAATTTTCGCCACCAATTCCATTGAAAAAGGAAT
AAATCCTCCAAATAATTAATGAACTCCCAAACCGGAAGTTTAATAAAAGG
TTATGATTCTCTTTTAAAGGGCCCGTGGTTTTGTATTTTAAAA
NNTTAAGAATGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTCAACTGAGGAATACCGAATGGCAGAGAA
GCACCTGAACAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGTCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCG
TATGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCATTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAACGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGACTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAA
CACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCT
CCTTAGAAGTGGGAACAACACACCCTTGTAAGGAGTTACAGAAGACAAGT
TTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCTTATCCAGGG
AATTCCCCCATAATCAGCATCCCAACGCTGAACCCATTGCATACACTAGC
AAGAATTTTATCGAAAGGACCCAAATGTCACTTGTCTCTTGCGAGACTAT
GCCGTGGGCCTATCAAACACAGAAAGTGGATTGCCAACAGTCCGGTTAAT
GGAATGGATCACAGGGTCTCCCAATGCAGGGAACTAAAAGAAAAGTACCC
CAAGGGAGCTTAAGGGAAACTCGGCACCCCTTAATGGGGTGGGATTTCCT
TTTTTGGAATCTAACCCCGTTTCCCCCGGAAACTTCTCTTGAATCTAAGC
TTGTCAATATTTATCTAACAAGAAAGGGGGCCCTAATCCGCGCCACTCTC
CCGTTGTAAACAAGAAGAGGCCCCATGTTGTGATACCACATAAACCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_j01.b1 MSMg01no048_j01.b1 CHROMAT_FILE:
MSMg01no048_j01.b1 PHD_FILE: MSMg01no048_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:39 2005
         (685 letters)



>mm_chrX_18126236_18127320
          Length = 1085

 Score = 1255 bits (649), Expect = 0.0
 Identities = 676/685 (98%), Gaps = 1/685 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatgtttataacacttgaatatcatccttaaaatagttgtgaccttgtaggggagttg 60
           |||||||| ||||||||||||||||||  | |||||||||||||||||||||||||||||
Sbjct: 201 tagatgttaataacacttgaatatcataataaaaatagttgtgaccttgtaggggagttg 260

                                                                       
Query: 61  ccctaacatgtcattctttccagaatatgagcaaacttgaaaagtgaaatgtaactgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctaacatgtcattctttccagaatatgagcaaacttgaaaagtgaaatgtaactgctt 320

                                                                       
Query: 121 tgagcttgaaaatctgtgaaatatgttgaaaggttagataaattctctcagttctgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagcttgaaaatctgtgaaatatgttgaaaggttagataaattctctcagttctgatgg 380

                                                                       
Query: 181 gtgtcatctttgatttattctttgccttcacctacagtgaacacctctgttttacttggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtcatctttgatttattctttgccttcacctacagtgaacacctctgttttacttggg 440

                                                                       
Query: 241 tgacaaacttctactctaaatactgacttaattatgtttctgaatatttgagaaaatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacaaacttctactctaaatactgacttaattatgtttctgaatatttgagaaaatgaa 500

                                                                       
Query: 301 caaaagtttctcagtttttataaagctaaaactaattacaatgcttaaatctatctattt 360
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaagtttctcagattttagaaagctaaaactaattacaatgcttaaatctatctattt 560

                                                                       
Query: 361 aaaatgttttgattgtcaccattacagtttggatgtcaaatgtcttccaaagatgtatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatgttttgattgtcaccattacagtttggatgtcaaatgtcttccaaagatgtatgt 620

                                                                       
Query: 421 tgaagttttattcctgtcttagtggtcctatcaggagagggtaggaactcaggaaatgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaagttttattcctgtcttagtggtcctatcaggagagggtaggaactcaggaaatgga 680

                                                                       
Query: 481 gagggtctagttagaggaattaaatcactgaccctacctcctaaatttatagagctatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagggtctagttagaggaattaaatcactgaccctacctcctaaatttatagagctatgc 740

                                                                       
Query: 541 taacaaaaaatatagtatggcacaaaatcagacatataaactaatgaaaaaaaatcaaaa 600
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taacaaaaa-tatggtatggcacaaaatcagacatataaactaatgaaaaaaaatcaaaa 799

                                                                       
Query: 601 cctaaatatgttaagttcagacacttactgtttggtaaagatgtggcaaacataaggtgg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cctaaatatgttaagttcagacacttactgtttggtaaagatgtggcaaacataaggtgg 859

                                    
Query: 661 acaaacgaaagcatcttcaacaaat 685
           ||||| |||||||||||||||||||
Sbjct: 860 acaaatgaaagcatcttcaacaaat 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)