Query= MSMg01no048_j03.b1 MSMg01no048_j03.b1 CHROMAT_FILE:
MSMg01no048_j03.b1 PHD_FILE: MSMg01no048_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:40 2005
(698 letters)
>mm_chrX_42494526_42495623
Length = 1098
Score = 702 bits (363), Expect = 0.0
Identities = 383/391 (97%), Gaps = 4/391 (1%)
Strand = Plus / Minus
Query: 1 tcataagcaggaatcaatcttcacattcaacct--taaactatataaatttaatcaaact 58
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 389 tcataagcaggaatcaatcttcacattcaa--tagtagcctatataaatttaatcaaact 332
Query: 59 ttcacataggatgaattacatacacttctttaaaacatccttaggcatagggaataaatt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttcacataggatgaattacatacacttctttaaaacatccttaggcatagggaataaatt 272
Query: 119 actgggttaaggactttctacacaatcatttgaacctgattttgttccttagcagacata 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 actgggttaaggactttctacacaatcatttgaacctgattttgttccttagcagacata 212
Query: 179 taagaaataagcatgagacagctatatcagggtcctttcagcaaaatcttgcttgtgtac 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 211 taagaaataagcatgagacagctatatcagggtcctttcagccaaatcttgcttgtgtac 152
Query: 239 gcaatggtgtcagcatttggaggctgattatgggatggatcgccgggtatggcagcctct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gcaatggtgtcagcatttggaggctgattatgggatggatcgccgggtatggcagcctct 92
Query: 299 agatagtccatccttttgtctcagttcaaaactttgtctctgtaactccttccatgggtg 358
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 91 agatagtccatccttttgtctcagctcaaaactttgtctctgtaactccttccatgggtg 32
Query: 359 ttttgttcccaattcgaagaaggggcaaagt 389
|||||||||||||||||||||||||||||||
Sbjct: 31 ttttgttcccaattcgaagaaggggcaaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_j03.g1 MSMg01no048_j03.g1 CHROMAT_FILE:
MSMg01no048_j03.g1 PHD_FILE: MSMg01no048_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:40 2005
(763 letters)
>mm_chrX_42309590_42310757
Length = 1168
Score = 1369 bits (708), Expect = 0.0
Identities = 751/768 (97%), Gaps = 5/768 (0%)
Strand = Plus / Plus
Query: 1 agcctactttctaacttaatgtctcaataccctttcaaattttagattgcatttcatcat 60
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 201 agcctactttctaacttaatgtctcaatacattttcaaattttagattgtatttcatcat 260
Query: 61 gttcagttgatggtcattgccagatataggaacagagatgaaggatggcagtcatttagg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gttcagttgatggtcattgccagatataggaacagagatgaaggatggcagttatttagg 320
Query: 121 tatcactgatagggatcaaagtagattttttaaaaaatcatagttcaggcattatgaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcactgatagggatcaaagtagattttttaaaaaatcatagttcaggcattatgaaat 380
Query: 181 atgagctcgaggatagtcgagagactatatcctgtagcctgctgtatcaatcttttaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagctcgaggatagtcgagagactatatcctgtagcctgctgtatcaatcttttaata 440
Query: 241 agaagggacagagttttctatcatctccctacacatgagaaatttgattgcagacacatt 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaggaacagagttttctatcatctccctacacatgagaaatttgattgcagacacatt 500
Query: 301 ttgtaataaaatcaaacttattttgtagaaataaattttgttgaaatttatttctcataa 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtaataaaatcaaacttattttggagaaataaattttgttgaaatttatttctcataa 560
Query: 361 tatagttactgtctctcacaagatgtacatatattgaatatgcaatctatctcaagcaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatagttactgtctctcacaagatgtacatatattgaatatgcaatctatctcaagcaat 620
Query: 421 atcagtaatttcaaactaggaaaatcaaattatagagttaaaatgacaagtatggatgct 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 atcagtaatttcaaactaggaaaatcaaattatagagttaaaatgaaaagtatggatgct 680
Query: 481 ctaaaacatcataagctgaattttctattttaaaataccgcattactaaagtgattctgc 540
|||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |||||
Sbjct: 681 ctaaaacatcataagctgaattttcttttttaaaatacagtattactaaagtgactctgc 740
Query: 541 atttaaatcttcctctctgatactgaaacatttctacttgaaaatatgtatagcatttta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttaaatcttcctctctgatactgaaacatttctacttgaaaatatgtatagcatttta 800
Query: 601 aaaacaaaac-----ttcattagaaaatatgcctacatgaaatttaacatattatatact 655
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaacaaaacaaaacttcattagaaaatatgcctacatgaaatttaacatattatatact 860
Query: 656 atgattttctaaactgaatataaatgcagctatccagctctaaagaaactgactttttta 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 atgattttctaaactgaatataaatgcagctatccagctctaaagaaactgactttttta 920
Query: 716 gttttaagagttttcacaggccgggtatggtggcacaagccttttttt 763
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 921 gttttaagagtattcacaggccgggtatggtggcacaagccttttttt 968
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1168
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1158
Effective search space: 871974
Effective search space used: 871974
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
